{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,11]],"date-time":"2024-09-11T05:57:19Z","timestamp":1726034239067},"publisher-location":"Cham","reference-count":21,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783030243074"},{"type":"electronic","value":"9783030243081"}],"license":[{"start":{"date-parts":[[2019,1,1]],"date-time":"2019-01-01T00:00:00Z","timestamp":1546300800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2019]]},"DOI":"10.1007\/978-3-030-24308-1_48","type":"book-chapter","created":{"date-parts":[[2019,6,28]],"date-time":"2019-06-28T11:03:03Z","timestamp":1561719783000},"page":"602-612","update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Integration Strategies of Cross-Platform Microarray Data Sets in Multiclass Classification Problem"],"prefix":"10.1007","author":[{"given":"Sebastian","family":"Student","sequence":"first","affiliation":[]},{"given":"Alicja","family":"P\u0142uciennik","sequence":"additional","affiliation":[]},{"given":"Krzysztof","family":"\u0141akomiec","sequence":"additional","affiliation":[]},{"given":"Agata","family":"Wilk","sequence":"additional","affiliation":[]},{"given":"Wojciech","family":"Bensz","sequence":"additional","affiliation":[]},{"given":"Krzysztof","family":"Fujarewicz","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2019,6,29]]},"reference":[{"key":"48_CR1","doi-asserted-by":"publisher","first-page":"3","DOI":"10.1038\/4427","volume":"21","author":"ES Lander","year":"1999","unstructured":"Lander, E.S.: Array of hope. Nat. Genet. 21, 3\u20134 (1999)","journal-title":"Nat. Genet."},{"issue":"17","key":"48_CR2","doi-asserted-by":"publisher","first-page":"4672","DOI":"10.1021\/ac034241b","volume":"75","author":"TL Fare","year":"2003","unstructured":"Fare, T.L., et al.: Effects of atmospheric ozone on microarray data quality. Anal. Chem. 75(17), 4672\u20134675 (2003)","journal-title":"Anal. Chem."},{"key":"48_CR3","doi-asserted-by":"publisher","first-page":"278","DOI":"10.1038\/tpj.2010.57","volume":"10","author":"J Luo","year":"2010","unstructured":"Luo, J., et al.: A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data. Pharmacogenomics J. 10, 278\u2013291 (2010)","journal-title":"Pharmacogenomics J."},{"key":"48_CR4","doi-asserted-by":"publisher","first-page":"733","DOI":"10.1038\/nrg2825","volume":"11","author":"JT Leek","year":"2010","unstructured":"Leek, J.T., et al.: Tackling the widespread and critical impact of batch effects in high-throughput data. Nat. Rev. Genet. 11, 733\u2013739 (2010)","journal-title":"Nat. Rev. Genet."},{"issue":"4","key":"48_CR5","doi-asserted-by":"publisher","first-page":"417","DOI":"10.1016\/j.engappai.2004.04.015","volume":"17","author":"K Simek","year":"2004","unstructured":"Simek, K., et al.: Using SVD and SVM methods for selection, classification, clustering and modeling of DNA microarray data. Eng. Appl. Artif. Intell. 17(4), 417\u2013427 (2004)","journal-title":"Eng. Appl. Artif. Intell."},{"key":"48_CR6","doi-asserted-by":"publisher","first-page":"1239","DOI":"10.1007\/s00432-016-2147-y","volume":"142","author":"K Lisowska","year":"2016","unstructured":"Lisowska, K., et al.: Unsupervised analysis reveals two molecular subgroups of serous ovarian cancer with distinct gene expression profiles and survival. J. Cancer Res. Clin. Oncol. 142, 1239\u20131252 (2016)","journal-title":"J. Cancer Res. Clin. Oncol."},{"issue":"1","key":"48_CR7","doi-asserted-by":"publisher","first-page":"43","DOI":"10.1142\/S0218339003000658","volume":"11","author":"K Fujarewicz","year":"2003","unstructured":"Fujarewicz, K., Kimmel, M., Rzeszowska-Wolny, J., Swierniak, A.: A note on classification of gene expression data using support vector machines. J. Biol. Syst. 11(1), 43\u201356 (2003)","journal-title":"J. Biol. Syst."},{"issue":"2","key":"48_CR8","doi-asserted-by":"publisher","first-page":"e17238","DOI":"10.1371\/journal.pone.0017238","volume":"6","author":"C Chen","year":"2011","unstructured":"Chen, C., et al.: Removing batch effects in analysis of expression microarray data: an evaluation of six batch adjustment methods. PLoS One 6(2), e17238 (2011)","journal-title":"PLoS One"},{"issue":"1","key":"48_CR9","doi-asserted-by":"publisher","first-page":"105","DOI":"10.1093\/bioinformatics\/btg385","volume":"20","author":"CM Perou","year":"2004","unstructured":"Perou, C.M., et al.: Adjustment of systematic microarray data biases. Bioinformatics 20(1), 105\u2013114 (2004)","journal-title":"Bioinformatics"},{"issue":"4","key":"48_CR10","first-page":"469","volume":"14","author":"A Coletta","year":"2012","unstructured":"Coletta, A., et al.: Batch effect removal methods for microarray gene expression data integration: a survey. Brief. Bioinform. 14(4), 469\u2013490 (2012)","journal-title":"Brief. Bioinform."},{"issue":"18","key":"48_CR11","doi-asserted-by":"publisher","first-page":"10101","DOI":"10.1073\/pnas.97.18.10101","volume":"97","author":"O Alter","year":"2000","unstructured":"Alter, O., Brown, P.O., Botstein, D.: Singular value decomposition for genome-wide expression data processing and modeling. Proc. Nat. Acad. Sci. 97(18), 10101\u201310106 (2000)","journal-title":"Proc. Nat. Acad. Sci."},{"issue":"9","key":"48_CR12","doi-asserted-by":"publisher","first-page":"1724","DOI":"10.1371\/journal.pgen.0030161","volume":"3","author":"JT Leek","year":"2007","unstructured":"Leek, J.T., Storey, J.D.: Capturing heterogeneity in gene expression studies by surrogate variable analysis. PloS Genet. 3(9), 1724\u20131735 (2007)","journal-title":"PloS Genet."},{"key":"48_CR13","doi-asserted-by":"publisher","first-page":"42","DOI":"10.1186\/1755-8794-1-42","volume":"1","author":"AH Sims","year":"2008","unstructured":"Sims, A.H., et al.: The removal of multiplicative, systematic bias allows integration of breast cancer gene expression datasets\u2013improving meta-analysis and prediction of prognosis. BMC Med. Genomics 1, 42 (2008)","journal-title":"BMC Med. Genomics"},{"key":"48_CR14","doi-asserted-by":"publisher","first-page":"48","DOI":"10.1186\/1471-2105-8-48","volume":"8","author":"R Sandberg","year":"2007","unstructured":"Sandberg, R., Larsson, O.: Improved precision and accuracy for microarrays using updated probe set definitions. BMC Bioinform. 8, 48 (2007)","journal-title":"BMC Bioinform."},{"issue":"2","key":"48_CR15","doi-asserted-by":"publisher","first-page":"242","DOI":"10.1093\/biostatistics\/kxp059","volume":"11","author":"MN McCall","year":"2010","unstructured":"McCall, M.N., Bolstad, B.M., Irizarry, R.A.: Frozen robust multiarray analysis (fRMA). Biostatistics (Oxford, England) 11(2), 242\u2013253 (2010)","journal-title":"Biostatistics (Oxford, England)"},{"issue":"1","key":"48_CR16","first-page":"118","volume":"8","author":"C Li","year":"2006","unstructured":"Li, C., Johnson, W.E., Rabinovic, A.: Adjusting batch effects in microarray expression data using empirical Bayes methods. Biostatistics 8(1), 118\u2013127 (2006)","journal-title":"Biostatistics"},{"key":"48_CR17","doi-asserted-by":"publisher","first-page":"e0156594","DOI":"10.1371\/journal.pone.0156594","volume":"11","author":"C M\u00fcller","year":"2016","unstructured":"M\u00fcller, C., et al.: Removing batch effects from longitudinal gene expression - quantile normalization plus combat as best approach for microarray transcriptome data. PLoS One 11, e0156594 (2016)","journal-title":"PLoS One"},{"key":"48_CR18","doi-asserted-by":"publisher","first-page":"892","DOI":"10.7150\/ijbs.24548","volume":"14","author":"H Cai","year":"2018","unstructured":"Cai, H., et al.: Identifying differentially expressed genes from cross-site integrated data based on relative expression orderings. Int. J. Biol. Sci. 14, 892\u2013900 (2018)","journal-title":"Int. J. Biol. Sci."},{"issue":"33","key":"48_CR19","first-page":"1","volume":"7","author":"S Student","year":"2012","unstructured":"Student, S., Fujarewicz, K.: Stable feature selection and classification algorithms for multiclass microarray data. Biol. Direct 7(33), 1\u201320 (2012)","journal-title":"Biol. Direct"},{"key":"48_CR20","series-title":"Lecture Notes in Computer Science (Lecture Notes in Artificial Intelligence)","doi-asserted-by":"publisher","first-page":"765","DOI":"10.1007\/978-3-319-54430-4_73","volume-title":"Intelligent Information and Database Systems","author":"K Fujarewicz","year":"2017","unstructured":"Fujarewicz, K., et al.: Large-scale data classification system based on galaxy server and protected from information leak. In: Nguyen, N.T., Tojo, S., Nguyen, L.M., Trawi\u0144ski, B. (eds.) ACIIDS 2017. LNCS (LNAI), vol. 10192, pp. 765\u2013773. Springer, Cham (2017). \n                      https:\/\/doi.org\/10.1007\/978-3-319-54430-4_73"},{"key":"48_CR21","series-title":"Advances in Intelligent Systems and Computing","doi-asserted-by":"publisher","first-page":"417","DOI":"10.1007\/978-3-319-73450-7_40","volume-title":"Proceedings of the International Conference on Information Technology & Systems (ICITS 2018)","author":"K Pojda","year":"2018","unstructured":"Pojda, K., Jakubczak, M., Student, S., \u015awierniak, A., Fujarewicz, K.: Comparing different data fusion strategies for cancer classification. In: Rocha, \u00c1., Guarda, T. (eds.) ICITS 2018. AISC, vol. 721, pp. 417\u2013426. Springer, Cham (2018). \n                      https:\/\/doi.org\/10.1007\/978-3-319-73450-7_40"}],"container-title":["Lecture Notes in Computer Science","Computational Science and Its Applications \u2013 ICCSA 2019"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-030-24308-1_48","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,6,28]],"date-time":"2019-06-28T11:14:17Z","timestamp":1561720457000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-030-24308-1_48"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019]]},"ISBN":["9783030243074","9783030243081"],"references-count":21,"URL":"https:\/\/doi.org\/10.1007\/978-3-030-24308-1_48","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2019]]},"assertion":[{"value":"29 June 2019","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}},{"value":"ICCSA","order":1,"name":"conference_acronym","label":"Conference Acronym","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"International Conference on Computational Science and Its Applications","order":2,"name":"conference_name","label":"Conference Name","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Saint Petersburg","order":3,"name":"conference_city","label":"Conference City","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Russia","order":4,"name":"conference_country","label":"Conference Country","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2019","order":5,"name":"conference_year","label":"Conference Year","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"1 July 2019","order":7,"name":"conference_start_date","label":"Conference Start Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"4 July 2019","order":8,"name":"conference_end_date","label":"Conference End Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"19","order":9,"name":"conference_number","label":"Conference Number","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"iccsa2019","order":10,"name":"conference_id","label":"Conference ID","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"http:\/\/www.iccsa.org\/","order":11,"name":"conference_url","label":"Conference URL","group":{"name":"ConferenceInfo","label":"Conference Information"}}]}}