{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,11]],"date-time":"2024-09-11T07:16:42Z","timestamp":1726039002930},"publisher-location":"Cham","reference-count":13,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783030280413"},{"type":"electronic","value":"9783030280420"}],"license":[{"start":{"date-parts":[[2019,1,1]],"date-time":"2019-01-01T00:00:00Z","timestamp":1546300800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2019]]},"DOI":"10.1007\/978-3-030-28042-0_12","type":"book-chapter","created":{"date-parts":[[2019,7,31]],"date-time":"2019-07-31T21:03:46Z","timestamp":1564607026000},"page":"177-180","update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Hybrid Modeling of Metabolic-Regulatory Networks (Extended Abstract)"],"prefix":"10.1007","author":[{"given":"Lin","family":"Liu","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Alexander","family":"Bockmayr","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2019,8,1]]},"reference":[{"issue":"1","key":"12_CR1","doi-asserted-by":"publisher","first-page":"73","DOI":"10.1006\/jtbi.2001.2405","volume":"213","author":"MW Covert","year":"2001","unstructured":"Covert, M.W., Schilling, C.H., Palsson, B.\u00d8.: Regulation of gene expression in flux balance models of metabolism. J. Theor. Biol. 213(1), 73\u201388 (2001)","journal-title":"J. Theor. Biol."},{"issue":"1","key":"12_CR2","doi-asserted-by":"publisher","first-page":"93","DOI":"10.1186\/s12918-015-0238-z","volume":"9","author":"L Marmiesse","year":"2015","unstructured":"Marmiesse, L., Peyraud, R., Cottret, L.: FlexFlux: combining metabolic flux and regulatory network analyses. BMC Syst. Biol. 9(1), 93 (2015)","journal-title":"BMC Syst. Biol."},{"issue":"6","key":"12_CR3","doi-asserted-by":"publisher","first-page":"1210","DOI":"10.1016\/j.automatica.2011.02.038","volume":"47","author":"A Goelzer","year":"2011","unstructured":"Goelzer, A., Fromion, V., Scorletti, G.: Cell design in bacteria as a convex optimization problem. Automatica 47(6), 1210\u20131218 (2011)","journal-title":"Automatica"},{"key":"12_CR4","doi-asserted-by":"publisher","first-page":"929","DOI":"10.1038\/ncomms1928","volume":"3","author":"JA Lerman","year":"2012","unstructured":"Lerman, J.A., Hyduke, D.R., Latif, H., Portnoy, V.A., et al.: In silico method for modelling metabolism and gene product expression at genome scale. Nat. Commun. 3, 929 (2012)","journal-title":"Nat. Commun."},{"key":"12_CR5","doi-asserted-by":"publisher","first-page":"469","DOI":"10.1016\/j.jtbi.2014.10.035","volume":"365","author":"S Waldherr","year":"2015","unstructured":"Waldherr, S., Oyarz\u00fan, D.A., Bockmayr, A.: Dynamic optimization of metabolic networks coupled with gene expression. J. Theor. Biol. 365, 469\u2013485 (2015)","journal-title":"J. Theor. Biol."},{"key":"12_CR6","doi-asserted-by":"publisher","first-page":"15247","DOI":"10.1038\/srep15247","volume":"5","author":"M R\u00fcgen","year":"2015","unstructured":"R\u00fcgen, M., Bockmayr, A., Steuer, R.: Elucidating temporal resource allocation and diurnal dynamics in phototrophic metabolism using conditional FBA. Sci. Rep. 5, 15247 (2015)","journal-title":"Sci. Rep."},{"issue":"7","key":"12_CR7","doi-asserted-by":"publisher","first-page":"e1006302","DOI":"10.1371\/journal.pcbi.1006302","volume":"14","author":"CJ Lloyd","year":"2018","unstructured":"Lloyd, C.J., et al.: COBRAme: a computational framework for genome-scale models of metabolism and gene expression. PLoS Comput. Biol. 14(7), e1006302 (2018)","journal-title":"PLoS Comput. Biol."},{"issue":"2","key":"12_CR8","doi-asserted-by":"publisher","first-page":"124","DOI":"10.1016\/j.biosystems.2005.10.005","volume":"84","author":"D Ropers","year":"2006","unstructured":"Ropers, D., De Jong, H., Page, M., Schneider, D., Geiselmann, J.: Qualitative simulation of the carbon starvation response in Escherichia coli. Biosystems 84(2), 124\u2013152 (2006)","journal-title":"Biosystems"},{"key":"12_CR9","doi-asserted-by":"publisher","first-page":"259","DOI":"10.1016\/j.jtbi.2018.10.026","volume":"462","author":"M Chaves","year":"2019","unstructured":"Chaves, M., Oyarz\u00fan, D.A., Gouz\u00e9, J.L.: Analysis of a genetic-metabolic oscillator with piecewise linear models. J. Theor. Biol. 462, 259\u2013269 (2019)","journal-title":"J. Theor. Biol."},{"key":"12_CR10","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"85","DOI":"10.1007\/3-540-45619-8_7","volume-title":"Logic Programming","author":"A Bockmayr","year":"2002","unstructured":"Bockmayr, A., Courtois, A.: Using hybrid concurrent constraint programming to model dynamic biological systems. In: Stuckey, P.J. (ed.) ICLP 2002. LNCS, vol. 2401, pp. 85\u201399. Springer, Heidelberg (2002). https:\/\/doi.org\/10.1007\/3-540-45619-8_7"},{"key":"12_CR11","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"424","DOI":"10.1007\/978-3-540-68894-5_12","volume-title":"Formal Methods for Computational Systems Biology","author":"L Bortolussi","year":"2008","unstructured":"Bortolussi, L., Policriti, A.: Hybrid systems and biology. In: Bernardo, M., Degano, P., Zavattaro, G. (eds.) SFM 2008. LNCS, vol. 5016, pp. 424\u2013448. Springer, Heidelberg (2008). https:\/\/doi.org\/10.1007\/978-3-540-68894-5_12"},{"issue":"1","key":"12_CR12","doi-asserted-by":"crossref","first-page":"323","DOI":"10.1038\/msb.2009.82","volume":"5","author":"D Molenaar","year":"2009","unstructured":"Molenaar, D., Van Berlo, R., De Ridder, D., Teusink, B.: Shifts in growth strategies reflect tradeoffs in cellular economics. Mol. Syst. Biol. 5(1), 323 (2009)","journal-title":"Mol. Syst. Biol."},{"key":"12_CR13","doi-asserted-by":"publisher","first-page":"94","DOI":"10.3389\/fgene.2016.00094","volume":"7","author":"W Abou-Jaoud\u00e9","year":"2016","unstructured":"Abou-Jaoud\u00e9, W., et al.: Logical modeling and dynamical analysis of cellular networks. Front. Genet. 7, 94 (2016)","journal-title":"Front. Genet."}],"container-title":["Lecture Notes in Computer Science","Hybrid Systems Biology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-030-28042-0_12","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,12,4]],"date-time":"2019-12-04T16:26:06Z","timestamp":1575476766000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-030-28042-0_12"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019]]},"ISBN":["9783030280413","9783030280420"],"references-count":13,"URL":"https:\/\/doi.org\/10.1007\/978-3-030-28042-0_12","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2019]]},"assertion":[{"value":"1 August 2019","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}},{"value":"HSB","order":1,"name":"conference_acronym","label":"Conference Acronym","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"International Workshop on Hybrid Systems Biology","order":2,"name":"conference_name","label":"Conference Name","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Prague","order":3,"name":"conference_city","label":"Conference City","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Czech Republic","order":4,"name":"conference_country","label":"Conference Country","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2019","order":5,"name":"conference_year","label":"Conference Year","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"6 April 2019","order":7,"name":"conference_start_date","label":"Conference Start Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"7 April 2019","order":8,"name":"conference_end_date","label":"Conference End Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"6","order":9,"name":"conference_number","label":"Conference Number","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"hsb2019","order":10,"name":"conference_id","label":"Conference ID","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"http:\/\/hsb2019.fit.vutbr.cz","order":11,"name":"conference_url","label":"Conference URL","group":{"name":"ConferenceInfo","label":"Conference Information"}}]}}