{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,26]],"date-time":"2025-03-26T16:31:01Z","timestamp":1743006661731,"version":"3.40.3"},"publisher-location":"Cham","reference-count":13,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783030374860"},{"type":"electronic","value":"9783030374877"}],"license":[{"start":{"date-parts":[[2019,1,1]],"date-time":"2019-01-01T00:00:00Z","timestamp":1546300800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2019]]},"DOI":"10.1007\/978-3-030-37487-7_10","type":"book-chapter","created":{"date-parts":[[2019,12,13]],"date-time":"2019-12-13T04:22:10Z","timestamp":1576210930000},"page":"116-124","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Prediction of RNA Secondary Structure Based on Optimization in the Space of Its Descriptors by the Simulated Annealing Algorithm"],"prefix":"10.1007","author":[{"given":"Nikolay","family":"Kobalo","sequence":"first","affiliation":[]},{"given":"Alexander","family":"Kulikov","sequence":"additional","affiliation":[]},{"given":"Igor","family":"Titov","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2019,12,16]]},"reference":[{"key":"10_CR1","doi-asserted-by":"publisher","DOI":"10.1007\/978-1-84800-070-4","volume-title":"The Algorithm Design Manual","author":"S Skiena","year":"2010","unstructured":"Skiena, S.: The Algorithm Design Manual, 2nd edn. Springer, Heidelberg (2010). \nhttps:\/\/doi.org\/10.1007\/978-1-84800-070-4","edition":"2"},{"key":"10_CR2","first-page":"831","volume":"26","author":"J Reuter","year":"2009","unstructured":"Reuter, J., Mathews, D.H.: RNAstructure: software for RNA secondary structure prediction and analysis. J. Biomol. Struct. Dyn. 26, 831\u2013832 (2009)","journal-title":"J. Biomol. Struct. Dyn."},{"key":"10_CR3","doi-asserted-by":"publisher","first-page":"108","DOI":"10.1186\/1471-2105-12-108","volume":"12","author":"AO Harmanci","year":"2011","unstructured":"Harmanci, A.O., Sharma, G., Mathews, D.H.: TurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequences. BMC Bioinform. 12, 108 (2011). \nhttps:\/\/doi.org\/10.1186\/1471-2105-12-108","journal-title":"BMC Bioinform."},{"issue":"20","key":"10_CR4","doi-asserted-by":"publisher","first-page":"2691","DOI":"10.1093\/bioinformatics\/bts488","volume":"28","author":"Z. Sukosd","year":"2012","unstructured":"Sukosd, Z., Knudsen, B., Kjems, J., Pedersen, C.N.S.: PPfold 3.0: fast RNA secondary structure prediction using phylogeny and auxiliary data. Bioinformatics 28(16), 2012. \nhttps:\/\/doi.org\/10.1093\/bioinformatics\/bts488","journal-title":"Bioinformatics"},{"key":"10_CR5","unstructured":"http:\/\/www.softberry.com\/freedownloadhelp\/rna\/rscan\/rscan.all.html"},{"key":"10_CR6","unstructured":"Rfam family of tRNA. \nhttp:\/\/rfam.xfam.org\/family\/RF00005"},{"key":"10_CR7","doi-asserted-by":"publisher","first-page":"7706","DOI":"10.1073\/pnas.86.20.7706","volume":"86","author":"JA Jaeger","year":"1989","unstructured":"Jaeger, J.A., Turner, D.H., Zuker, M.: Improved predictions of secondary structures for RNA. Proc. Natl. Acad. Sci. U.S.A. 86, 7706\u20137710 (1989)","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"issue":"D1","key":"10_CR8","doi-asserted-by":"publisher","first-page":"D187","DOI":"10.1093\/nar\/gkr1043","volume":"40","author":"M. A. Candales","year":"2011","unstructured":"Candales, M.A., et al.: Database for bacterial group II introns. Nucleic Acids Res. 187\u2013190 (2012). \nhttps:\/\/doi.org\/10.1093\/nar\/gkr1043","journal-title":"Nucleic Acids Research"},{"key":"10_CR9","doi-asserted-by":"publisher","first-page":"33","DOI":"10.1007\/PL00006119","volume":"44","author":"JM Fontaine","year":"1997","unstructured":"Fontaine, J.M., Goux, D., Kloareg, B., Loiseaux-de Goer, S.: The reverse-transcriptase-like proteins encoded by group II introns in the mitochondrial genome of the brown alga pylaiella littoralis belong to two different lineages which apparently coevolved with the group II ribosyme lineages. J. Mol. Evol. 44, 33\u201342 (1997). \nhttps:\/\/doi.org\/10.1007\/PL00006119","journal-title":"J. Mol. Evol."},{"key":"10_CR10","unstructured":"Rfam family of selenocysteine transfer RNA \nhttp:\/\/rfam.xfam.org\/family\/RF01852"},{"key":"10_CR11","unstructured":"https:\/\/github.com\/rerf2010rerf\/RNAStructBuilder"},{"issue":"1","key":"10_CR12","first-page":"37","volume":"2","author":"DMW Powers","year":"2011","unstructured":"Powers, D.M.W.: Evaluation: from precision, recall and F-Measure to ROC, informedness, markedness & correlation (PDF). J. Mach. Learn. Technol. 2(1), 37\u201363 (2011)","journal-title":"J. Mach. Learn. Technol."},{"key":"10_CR13","doi-asserted-by":"publisher","first-page":"7","DOI":"10.1186\/s13100-015-0037-5","volume":"6","author":"S Zimmerly","year":"2015","unstructured":"Zimmerly, S., Semper, C.: Evolution of group II introns. Mob. DNA 6, 7 (2015). \nhttps:\/\/doi.org\/10.1186\/s13100-015-0037-5","journal-title":"Mob. DNA"}],"container-title":["Lecture Notes in Computer Science","Perspectives of System Informatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-030-37487-7_10","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,12,15]],"date-time":"2019-12-15T19:03:27Z","timestamp":1576436607000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-030-37487-7_10"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019]]},"ISBN":["9783030374860","9783030374877"],"references-count":13,"URL":"https:\/\/doi.org\/10.1007\/978-3-030-37487-7_10","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2019]]},"assertion":[{"value":"16 December 2019","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}},{"value":"PSI","order":1,"name":"conference_acronym","label":"Conference Acronym","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"International Andrei Ershov Memorial Conference on Perspectives of System Informatics","order":2,"name":"conference_name","label":"Conference Name","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Novosibirsk","order":3,"name":"conference_city","label":"Conference City","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Russia","order":4,"name":"conference_country","label":"Conference Country","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2019","order":5,"name":"conference_year","label":"Conference Year","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2 July 2019","order":7,"name":"conference_start_date","label":"Conference Start Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"5 July 2019","order":8,"name":"conference_end_date","label":"Conference End Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"12","order":9,"name":"conference_number","label":"Conference Number","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"ershov2019","order":10,"name":"conference_id","label":"Conference ID","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"https:\/\/psi.nsc.ru\/","order":11,"name":"conference_url","label":"Conference URL","group":{"name":"ConferenceInfo","label":"Conference Information"}}]}}