{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,11]],"date-time":"2025-10-11T08:25:54Z","timestamp":1760171154592,"version":"3.40.3"},"publisher-location":"Cham","reference-count":31,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783030453848"},{"type":"electronic","value":"9783030453855"}],"license":[{"start":{"date-parts":[[2020,1,1]],"date-time":"2020-01-01T00:00:00Z","timestamp":1577836800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"},{"start":{"date-parts":[[2020,1,1]],"date-time":"2020-01-01T00:00:00Z","timestamp":1577836800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2020]]},"DOI":"10.1007\/978-3-030-45385-5_58","type":"book-chapter","created":{"date-parts":[[2020,5,27]],"date-time":"2020-05-27T12:13:38Z","timestamp":1590581618000},"page":"647-658","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":7,"title":["Profiling Environmental Conditions from DNA"],"prefix":"10.1007","author":[{"given":"Sambriddhi","family":"Mainali","sequence":"first","affiliation":[]},{"given":"Max H.","family":"Garzon","sequence":"additional","affiliation":[]},{"given":"Fredy A.","family":"Colorado","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2020,4,30]]},"reference":[{"issue":"5","key":"58_CR1","doi-asserted-by":"publisher","first-page":"1021","DOI":"10.1126\/science.7973651","volume":"266","author":"LM Adleman","year":"1994","unstructured":"Adleman, L.M.: Molecular computation of solutions to combinatorial problems. Science 266(5), 1021\u20131024 (1994)","journal-title":"Science"},{"issue":"7","key":"58_CR2","doi-asserted-by":"publisher","first-page":"794","DOI":"10.1111\/ele.12282","volume":"17","author":"A Barber\u00e1n","year":"2014","unstructured":"Barber\u00e1n, A., Ramirez, K.S., Leff, J.W., Bradford, M.A., Wall, D.H., Fierer, N.: Why are some microbes more ubiquitous than others? Predicting the habitat breadth of soul bacteria. Ecol. Lett. 17(7), 794\u2013802 (2014)","journal-title":"Ecol. Lett."},{"key":"58_CR3","unstructured":"Candel, A., Parmar, V., LeDell, E., Arora, A.: Deep learning with H2O. H2O. ai Inc (2016)"},{"issue":"1555","key":"58_CR4","doi-asserted-by":"publisher","first-page":"3149","DOI":"10.1098\/rstb.2010.0142","volume":"365","author":"I Chuine","year":"2010","unstructured":"Chuine, I.: Why does phenology drive species distribution? Philos. Trans. R. Soc. B Biol. Sci. 365(1555), 3149\u20133160 (2010)","journal-title":"Philos. Trans. R. Soc. B Biol. Sci."},{"issue":"1","key":"58_CR5","doi-asserted-by":"publisher","first-page":"12","DOI":"10.1093\/jhered\/esw063","volume":"108","author":"FA Colorado-Garz\u00f3n","year":"2017","unstructured":"Colorado-Garz\u00f3n, F.A., Adler, P.H., Garc\u00eda, L.F., Mu\u00f1oz de Hoyos, P., Bueno, M.L., Matta, N.E.: Estimating diversity of black flies in the Simulium ignescens and Simulium tunja complexes in Colombia: chromosomal rearrangements as the core of integrative taxonomy. J. Hered. 108(1), 12\u201324 (2017)","journal-title":"J. Hered."},{"key":"58_CR6","doi-asserted-by":"publisher","first-page":"S15","DOI":"10.1097\/GIM.0b013e3181d5a67b","volume":"12","author":"R Cook-Deegan","year":"2010","unstructured":"Cook-Deegan, R., DeRienzo, C., Carbone, J., Chandrasekharan, S., Heaney, C., Conover, C.: Impact of gene patents and licensing practices on access to genetic testing for inherited susceptibility to cancer: comparing breast and ovarian cancers with colon cancers. Genet. Med. 12, S15\u2013S38 (2010)","journal-title":"Genet. Med."},{"issue":"4","key":"58_CR7","doi-asserted-by":"publisher","first-page":"1647","DOI":"10.1073\/pnas.74.4.1647","volume":"74","author":"PJ Darlington","year":"1977","unstructured":"Darlington, P.J.: The cost of evolution and the imprecision of adaptation. Proc. Natl. Acad. Sci. 74(4), 1647\u20131651 (1977)","journal-title":"Proc. Natl. Acad. Sci."},{"key":"58_CR8","doi-asserted-by":"publisher","first-page":"677","DOI":"10.1146\/annurev.ecolsys.110308.120159","volume":"40","author":"J Elith","year":"2009","unstructured":"Elith, J., Leathwick, J.R.: Species distribution models: ecological explanation and prediction across space and time. Annu. Rev. Ecol. Evol. Syst. 40, 677\u2013697 (2009)","journal-title":"Annu. Rev. Ecol. Evol. Syst."},{"key":"58_CR9","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"73","DOI":"10.1007\/978-3-642-32208-2_6","volume-title":"DNA Computing and Molecular Programming","author":"MH Garzon","year":"2012","unstructured":"Garzon, M.H., Bobba, K.C.: A geometric approach to gibbs energy landscapes and optimal DNA codeword design. In: Stefanovic, D., Turberfield, A. (eds.) DNA 2012. LNCS, vol. 7433, pp. 73\u201385. Springer, Heidelberg (2012). \nhttps:\/\/doi.org\/10.1007\/978-3-642-32208-2_6"},{"key":"58_CR10","unstructured":"Garzon, M.H., Mainali, S.: Towards reliable microarray analysis and design. In: The 9th International Conference on Bioinformatics and Computational Biology, ISCA (2017)"},{"key":"58_CR11","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"469","DOI":"10.1007\/978-3-319-56154-7_42","volume-title":"Bioinformatics and Biomedical Engineering","author":"MH Garzon","year":"2017","unstructured":"Garzon, M.H., Mainali, S.: Towards a universal genomic positioning system: phylogenetics and species IDentification. In: Rojas, I., Ortu\u00f1o, F. (eds.) IWBBIO 2017. LNCS, vol. 10209, pp. 469\u2013479. Springer, Cham (2017). \nhttps:\/\/doi.org\/10.1007\/978-3-319-56154-7_42"},{"key":"58_CR12","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"486","DOI":"10.1007\/978-3-319-78723-7_42","volume-title":"Bioinformatics and Biomedical Engineering","author":"MH Garzon","year":"2018","unstructured":"Garzon, M.H., Pham, D.T.: Genomic solutions to hospital-acquired bacterial infection identification. In: Rojas, I., Ortu\u00f1o, F. (eds.) IWBBIO 2018. LNCS, vol. 10813, pp. 486\u2013497. Springer, Cham (2018). \nhttps:\/\/doi.org\/10.1007\/978-3-319-78723-7_42"},{"key":"58_CR13","doi-asserted-by":"publisher","first-page":"375","DOI":"10.1007\/s11047-010-9232-y","volume":"10","author":"MH Garzon","year":"2011","unstructured":"Garzon, M.H., Wong, T.Y.: DNA chips for species identification and biological phylogenies. Nat. Comput. 10, 375\u2013389 (2011)","journal-title":"Nat. Comput."},{"key":"58_CR14","unstructured":"Garzon, M., Neathery, P., Deaton, R., Murphy, R.C., Franceschetti, D.R., Stevens Jr., S.E.: A new metric for DNA computing. In: Proceedings of the 2nd Genetic Programming Conference, pp. 472\u2013478. Morgan-Kaufmann (1997)"},{"issue":"12","key":"58_CR15","doi-asserted-by":"publisher","first-page":"1424","DOI":"10.1111\/ele.12189","volume":"16","author":"A Guisan","year":"2013","unstructured":"Guisan, A., et al.: Predicting species distributions for conservation decisions. Ecol. Lett. 16(12), 1424\u20131435 (2013)","journal-title":"Ecol. Lett."},{"key":"58_CR16","volume-title":"Neural Networks and Learning Machines","author":"S Haykin","year":"2018","unstructured":"Haykin, S.: Neural Networks and Learning Machines. Prenctice-Hall, New Jersey (2018)"},{"key":"58_CR17","doi-asserted-by":"publisher","first-page":"345","DOI":"10.1126\/science.1157897","volume":"321","author":"O Hoegh-Guldberg","year":"2008","unstructured":"Hoegh-Guldberg, O., et al.: Assisted colonization and rapid climate change. Science 321, 345\u2013346 (2008)","journal-title":"Science"},{"key":"58_CR18","doi-asserted-by":"crossref","unstructured":"Li, X., Qian, B., Wei, J., Zhang, X., Chen, S., Zheng, Q.: Domain knowledge guided deep atrial fibrillation classification and its visual interpretation. In: Proceedings of the 28th ACM International Conference on Information and Knowledge Management, pp. 129\u2013138. ACM (2019)","DOI":"10.1145\/3357384.3357998"},{"key":"58_CR19","doi-asserted-by":"crossref","unstructured":"Mainali, S., Colorado, F.A., Garzon, M.H.: Foretelling the phenotype of a genomic sequence. In: IEEE Transactions on Computational Biology and Bioinformatics, revision under review (2020)","DOI":"10.1109\/TCBB.2020.2985349"},{"key":"58_CR20","unstructured":"Marcus, G.: Innateness, alphazero, and artificial intelligence. arXiv preprint \narXiv:1801.05667\n\n (2018)"},{"key":"58_CR21","series-title":"Boston Studies in the Philosophy and History of Science","doi-asserted-by":"publisher","DOI":"10.1007\/978-94-009-8947-4","volume-title":"Autopoiesis and Cognition","author":"HR Maturana","year":"1980","unstructured":"Maturana, H.R., Varela, F.J.: Autopoiesis and Cognition. BSPHS, vol. 42. Springer, Dordrecht (1980). \nhttps:\/\/doi.org\/10.1007\/978-94-009-8947-4"},{"key":"58_CR22","doi-asserted-by":"crossref","unstructured":"Radovanovi\u0107, S., Deliba\u0161i\u0107, B., Jovanovi\u0107, M., Vuki\u0107evi\u0107, M., Suknovi\u0107, M.: Framework for integration of domain knowledge into logistic regression. In: Proceedings of the 8th International Conference on Web Intelligence, Mining and Semantics, p. 24. ACM (2018)","DOI":"10.1145\/3227609.3227653"},{"issue":"3","key":"58_CR23","doi-asserted-by":"publisher","first-page":"271","DOI":"10.1017\/s0094837300006795","volume":"6","author":"R Ricklefs","year":"1980","unstructured":"Ricklefs, R.: Phyletic gradualism vs. punctuated equilibrium: applicability of neontological data. Paleobiology 6(3), 271\u2013275 (1980). \nhttps:\/\/doi.org\/10.1017\/s0094837300006795","journal-title":"Paleobiology"},{"issue":"2","key":"58_CR24","doi-asserted-by":"publisher","first-page":"237","DOI":"10.1016\/0022-5193(82)90002-9","volume":"99","author":"NC Seeman","year":"1982","unstructured":"Seeman, N.C.: Nucleic acid junctions and lattices. J. Theor. Biol. 99(2), 237\u2013247 (1982)","journal-title":"J. Theor. Biol."},{"issue":"6921","key":"58_CR25","doi-asserted-by":"publisher","first-page":"427","DOI":"10.1038\/nature01406","volume":"421","author":"NC Seeman","year":"2003","unstructured":"Seeman, N.C.: DNA in a material world. Nature 421(6921), 427 (2003)","journal-title":"Nature"},{"issue":"1","key":"58_CR26","doi-asserted-by":"publisher","first-page":"3","DOI":"10.1086\/511656","volume":"82","author":"E Sober","year":"2007","unstructured":"Sober, E.: What is wrong with intelligent design? Q. Rev. Biol. 82(1), 3\u20138 (2007)","journal-title":"Q. Rev. Biol."},{"key":"58_CR27","doi-asserted-by":"crossref","unstructured":"Vasseur, F., et al.: Adaptive diversification of growth allometry in the plant Arabidopsis thaliana. PNAS 115:13 3416-3421 (2018)","DOI":"10.1073\/pnas.1709141115"},{"issue":"3","key":"58_CR28","doi-asserted-by":"publisher","first-page":"034603","DOI":"10.1103\/PhysRevFluids.2.034603","volume":"2","author":"JX Wang","year":"2017","unstructured":"Wang, J.X., Wu, J.L., Xiao, H.: Physics-informed machine learning approach for reconstructing Reynolds stress modeling discrepancies based on DNS data. Phys. Rev. Fluids 2(3), 034603 (2017)","journal-title":"Phys. Rev. Fluids"},{"key":"58_CR29","doi-asserted-by":"publisher","first-page":"737","DOI":"10.1038\/171737a0","volume":"171","author":"JD Watson","year":"1953","unstructured":"Watson, J.D., Crick, F.: A structure for deoxyribose nucleic acid. Nature 171, 737\u2013738 (1953)","journal-title":"Nature"},{"issue":"5","key":"58_CR30","doi-asserted-by":"publisher","first-page":"107","DOI":"10.1186\/gb-2009-10-5-107","volume":"10","author":"D Weigel","year":"2009","unstructured":"Weigel, D., Mott, R.: The 1001 genomes project for Arabidopsis thaliana. Genome Biol. 10(5), 107 (2009)","journal-title":"Genome Biol."},{"key":"58_CR31","doi-asserted-by":"crossref","unstructured":"Yin, C., Zhao, R., Qian, B., Lv, X., Zhang, P.: Domain Knowledge guided deep learning with electronic health records. In: IEEE International Conference on Data Mining (ICDM) (2019)","DOI":"10.1109\/ICDM.2019.00084"}],"container-title":["Lecture Notes in Computer Science","Bioinformatics and Biomedical Engineering"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-030-45385-5_58","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,5,27]],"date-time":"2020-05-27T12:18:39Z","timestamp":1590581919000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-030-45385-5_58"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2020]]},"ISBN":["9783030453848","9783030453855"],"references-count":31,"URL":"https:\/\/doi.org\/10.1007\/978-3-030-45385-5_58","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2020]]},"assertion":[{"value":"30 April 2020","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}},{"value":"IWBBIO","order":1,"name":"conference_acronym","label":"Conference Acronym","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"International Work-Conference on Bioinformatics and Biomedical Engineering","order":2,"name":"conference_name","label":"Conference Name","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Granada","order":3,"name":"conference_city","label":"Conference City","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Spain","order":4,"name":"conference_country","label":"Conference Country","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2020","order":5,"name":"conference_year","label":"Conference Year","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"6 May 2020","order":7,"name":"conference_start_date","label":"Conference Start Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"8 May 2020","order":8,"name":"conference_end_date","label":"Conference End Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"8","order":9,"name":"conference_number","label":"Conference Number","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"iwbbio2020","order":10,"name":"conference_id","label":"Conference ID","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"http:\/\/iwbbio.ugr.es\/","order":11,"name":"conference_url","label":"Conference URL","group":{"name":"ConferenceInfo","label":"Conference Information"}}]}}