{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,25]],"date-time":"2025-03-25T15:09:00Z","timestamp":1742915340678,"version":"3.40.3"},"publisher-location":"Cham","reference-count":11,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783030815226"},{"type":"electronic","value":"9783030815233"}],"license":[{"start":{"date-parts":[[2021,8,18]],"date-time":"2021-08-18T00:00:00Z","timestamp":1629244800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springer.com\/tdm"},{"start":{"date-parts":[[2021,8,18]],"date-time":"2021-08-18T00:00:00Z","timestamp":1629244800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2022]]},"DOI":"10.1007\/978-3-030-81523-3_30","type":"book-chapter","created":{"date-parts":[[2021,8,17]],"date-time":"2021-08-17T17:12:29Z","timestamp":1629220349000},"page":"310-317","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Implementation of Nussinov\u2019s RNA Folding Using the Kokkos Library"],"prefix":"10.1007","author":[{"given":"Mateusz","family":"Gruzewski","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Marek","family":"Palkowski","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2021,8,18]]},"reference":[{"key":"30_CR1","doi-asserted-by":"publisher","unstructured":"Chang, D.J., Kimmer, C., Ouyang, M.: Accelerating the Nussinov RNA folding algorithm with CUDA\/GPU. In: The 10th IEEE International Symposium on Signal Processing and Information Technology, pp. 120\u2013125 (2010). https:\/\/doi.org\/10.1109\/ISSPIT.2010.5711746","DOI":"10.1109\/ISSPIT.2010.5711746"},{"key":"30_CR2","doi-asserted-by":"publisher","unstructured":"Edwards, H.C., Trott, C.R., Sunderland, D.: Kokkos: enabling manycore performance portability through polymorphic memory access patterns. J. Parallel Distrib. Comput. 74(12), 3202\u20133216 (2014). https:\/\/doi.org\/10.1016\/j.jpdc.2014.07.003. http:\/\/www.sciencedirect.com\/science\/article\/pii\/S0743731514001257. Domain-Specific Languages and High-Level Frameworks for High-Performance Computing","DOI":"10.1016\/j.jpdc.2014.07.003"},{"key":"30_CR3","doi-asserted-by":"publisher","unstructured":"Jacob, A., Buhler, J., Chamberlain, R.D.: Accelerating Nussinov RNA secondary structure prediction with systolic arrays on FPGAs. In: Proceedings of the 2008 International Conference on Application-Specific Systems, Architectures and Processors, ASAP \u201908, pp. 191\u2013196. IEEE Computer Society, Washington, DC (2008). https:\/\/doi.org\/10.1109\/ASAP.2008.4580177","DOI":"10.1109\/ASAP.2008.4580177"},{"key":"30_CR4","doi-asserted-by":"crossref","unstructured":"Liu, L., Wang, M., Jiang, J., Li, R., Yang, G.: Efficient nonserial polyadic dynamic programming on the cell processor. In: 25th IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2011, Anchorage, Alaska, USA, 16\u201320 May 2011 - Workshop Proceedings, pp. 460\u2013471 (2011)","DOI":"10.1109\/IPDPS.2011.186"},{"key":"30_CR5","doi-asserted-by":"crossref","unstructured":"Liu, L., Wang, M., Jiang, J., Li, R., Yang, G.: Efficient nonserial polyadic dynamic programming on the cell processor. In: IPDPS Workshops, pp. 460\u2013471. IEEE, Anchorage (2011)","DOI":"10.1109\/IPDPS.2011.186"},{"key":"30_CR6","unstructured":"Mullapudi, R.T., Bondhugula, U.: Tiling for dynamic scheduling. In: Rajopadhye, S., Verdoolaege, S. (eds.) Proceedings of the 4th International Workshop on Polyhedral Compilation Techniques, Vienna, Austria (2014)"},{"issue":"1","key":"30_CR7","doi-asserted-by":"publisher","first-page":"68","DOI":"10.1137\/0135006","volume":"35","author":"R Nussinov","year":"1978","unstructured":"Nussinov, R., Pieczenik, G., Griggs, J.R., Kleitman, D.J.: Algorithms for loop matchings. SIAM J. Appl. Math. 35(1), 68\u201382 (1978)","journal-title":"SIAM J. Appl. Math."},{"key":"30_CR8","unstructured":"OpenMP Architecture Review Board: OpenMP application program interface version 4.0 (2013). http:\/\/www.openmp.org\/mp-documents\/OpenMP4.0.0.pdf"},{"issue":"1","key":"30_CR9","doi-asserted-by":"publisher","first-page":"290","DOI":"10.1186\/s12859-017-1707-8","volume":"18","author":"M Palkowski","year":"2017","unstructured":"Palkowski, M., Bielecki, W.: Parallel tiled Nussinov RNA folding loop nest generated using both dependence graph transitive closure and loop skewing. BMC Bioinform. 18(1), 290 (2017). https:\/\/doi.org\/10.1186\/s12859-017-1707-8","journal-title":"BMC Bioinform."},{"key":"30_CR10","unstructured":"Wonnacott, D., Jin, T., Lake, A.: Automatic tiling of \u201cmostly-tileable\" loop nests. In: IMPACT 2015: 5th International Workshop on Polyhedral Compilation Techniques, At Amsterdam, The Netherlands (2015)"},{"issue":"15","key":"30_CR11","doi-asserted-by":"publisher","first-page":"518","DOI":"10.1186\/s12859-017-1917-0","volume":"18","author":"C Zhao","year":"2017","unstructured":"Zhao, C., Sahni, S.: Cache and energy efficient algorithms for Nussinov\u2019s RNA folding. BMC Bioinform. 18(15), 518 (2017)","journal-title":"BMC Bioinform."}],"container-title":["Lecture Notes in Networks and Systems","Progress in Image Processing, Pattern Recognition and Communication Systems"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-030-81523-3_30","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,8,17]],"date-time":"2021-08-17T17:18:55Z","timestamp":1629220735000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-3-030-81523-3_30"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2021,8,18]]},"ISBN":["9783030815226","9783030815233"],"references-count":11,"URL":"https:\/\/doi.org\/10.1007\/978-3-030-81523-3_30","relation":{},"ISSN":["2367-3370","2367-3389"],"issn-type":[{"type":"print","value":"2367-3370"},{"type":"electronic","value":"2367-3389"}],"subject":[],"published":{"date-parts":[[2021,8,18]]},"assertion":[{"value":"18 August 2021","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}},{"value":"CORES","order":1,"name":"conference_acronym","label":"Conference Acronym","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"International Conference on Computer Recognition Systems","order":2,"name":"conference_name","label":"Conference Name","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2021","order":5,"name":"conference_year","label":"Conference Year","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"28 June 2021","order":7,"name":"conference_start_date","label":"Conference Start Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"30 June 2021","order":8,"name":"conference_end_date","label":"Conference End Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"cores2021","order":10,"name":"conference_id","label":"Conference ID","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"http:\/\/cores.pwr.edu.pl","order":11,"name":"conference_url","label":"Conference URL","group":{"name":"ConferenceInfo","label":"Conference Information"}}]}}