{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,27]],"date-time":"2025-03-27T20:48:00Z","timestamp":1743108480163,"version":"3.40.3"},"publisher-location":"Cham","reference-count":24,"publisher":"Springer Nature Switzerland","isbn-type":[{"type":"print","value":"9783031211744"},{"type":"electronic","value":"9783031211751"}],"license":[{"start":{"date-parts":[[2022,1,1]],"date-time":"2022-01-01T00:00:00Z","timestamp":1640995200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2022,1,1]],"date-time":"2022-01-01T00:00:00Z","timestamp":1640995200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2022]]},"DOI":"10.1007\/978-3-031-21175-1_2","type":"book-chapter","created":{"date-parts":[[2022,12,15]],"date-time":"2022-12-15T08:03:53Z","timestamp":1671091433000},"page":"14-19","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Scientific Workflow Interactions: An Application to\u00a0Cancer Gene Identification"],"prefix":"10.1007","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-8401-8843","authenticated-orcid":false,"given":"Diogo Munaro","family":"Vieira","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9235-4153","authenticated-orcid":false,"given":"Alexandre","family":"Heine","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0606-5994","authenticated-orcid":false,"given":"Elvismary Molina","family":"de Armas","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5946-4358","authenticated-orcid":false,"given":"Crist\u00f3v\u00e3o Antunes","family":"de Lanna","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3495-9917","authenticated-orcid":false,"given":"Mariana","family":"Boroni","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3073-3734","authenticated-orcid":false,"given":"S\u00e9rgio","family":"Lifschitz","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2022,12,16]]},"reference":[{"issue":"3","key":"2_CR1","doi-asserted-by":"publisher","first-page":"287","DOI":"10.21552\/edpl\/2016\/3\/4","volume":"2","author":"J Albrecht","year":"2017","unstructured":"Albrecht, J.: How the GDPR will change the world. Eur. Data Prot. Law Rev. 2(3), 287\u2013289 (2017). https:\/\/doi.org\/10.21552\/edpl\/2016\/3\/4","journal-title":"Eur. Data Prot. Law Rev."},{"key":"2_CR2","doi-asserted-by":"publisher","unstructured":"Altintas, I., Berkley, C., Jaeger, E., Jones, M., Lud\u00e4scher, B., Mock, S.: Kepler: an extensible system for design and execution of scientific workflows. In: Proceedings of the International Conference on Scientific and Statistical Database Management, SSDBM, vol. 16, pp. 423\u2013424 (2004). https:\/\/doi.org\/10.1109\/ssdm.2004.1311241","DOI":"10.1109\/ssdm.2004.1311241"},{"key":"2_CR3","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"746","DOI":"10.1007\/978-3-540-68111-3_78","volume-title":"Parallel Processing and Applied Mathematics","author":"A Barker","year":"2008","unstructured":"Barker, A., van Hemert, J.: Scientific workflow: a survey and research directions. In: Wyrzykowski, R., Dongarra, J., Karczewski, K., Wasniewski, J. (eds.) PPAM 2007. LNCS, vol. 4967, pp. 746\u2013753. Springer, Heidelberg (2008). https:\/\/doi.org\/10.1007\/978-3-540-68111-3_78"},{"key":"2_CR4","doi-asserted-by":"publisher","first-page":"81","DOI":"10.1038\/nrclinonc.2017.166","volume":"15","author":"I Dagogo-Jack","year":"2018","unstructured":"Dagogo-Jack, I., Shaw, A.T.: Tumour heterogeneity and resistance to cancer therapies. Nat. Rev. Clin. Oncol. 15, 81\u201394 (2018). https:\/\/doi.org\/10.1038\/nrclinonc.2017.166","journal-title":"Nat. Rev. Clin. Oncol."},{"issue":"4","key":"2_CR5","first-page":"44","volume":"30","author":"SB Davidson","year":"2007","unstructured":"Davidson, S.B., et al.: Provenance in scientific workflow systems. IEEE Data Eng. Bull. 30(4), 44\u201350 (2007)","journal-title":"IEEE Data Eng. Bull."},{"issue":"1","key":"2_CR6","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1023\/A:1024000426962","volume":"1","author":"E DeelmanDeelman","year":"2003","unstructured":"DeelmanDeelman, E., et al.: Mapping abstract complex workflows onto grid environments. J. Grid Comput. 1(1), 25\u201339 (2003). https:\/\/doi.org\/10.1023\/A:1024000426962","journal-title":"J. Grid Comput."},{"key":"2_CR7","unstructured":"Django Software Foundation: Django. https:\/\/djangoproject.com"},{"key":"2_CR8","unstructured":"Facebook: React js. https:\/\/reactjs.org"},{"key":"2_CR9","unstructured":"Franceschini, A., Franceschini, M.A., RUnit, S., biocViews Network, B.: Package \u2018STRINGdb\u2019 (2015)"},{"issue":"10","key":"2_CR10","doi-asserted-by":"publisher","first-page":"1115","DOI":"10.1002\/cpe.988","volume":"18","author":"Z Guan","year":"2006","unstructured":"Guan, Z., et al.: Grid-flow: a grid-enabled scientific workflow system with a petri-net-based interface. Concurrency Comput. Pract. Experience 18(10), 1115\u20131140 (2006). https:\/\/doi.org\/10.1002\/cpe.988","journal-title":"Concurrency Comput. Pract. Experience"},{"issue":"2","key":"2_CR11","doi-asserted-by":"publisher","first-page":"8","DOI":"10.1109\/MCG.2010.30","volume":"30","author":"DF Keefe","year":"2010","unstructured":"Keefe, D.F.: Integrating visualization and interaction research to improve scientific workflows. IEEE Comput. Graph. Appl. 30(2), 8\u201313 (2010). https:\/\/doi.org\/10.1109\/MCG.2010.30","journal-title":"IEEE Comput. Graph. Appl."},{"issue":"1","key":"2_CR12","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/1471-2105-9-559","volume":"9","author":"P Langfelder","year":"2008","unstructured":"Langfelder, P., Horvath, S.: Wgcna: an r package for weighted correlation network analysis. BMC Bioinf. 9(1), 1\u201313 (2008)","journal-title":"BMC Bioinf."},{"issue":"1","key":"2_CR13","doi-asserted-by":"publisher","first-page":"33","DOI":"10.1007\/s40614-019-00193-3","volume":"42","author":"S Laraway","year":"2019","unstructured":"Laraway, S., Snycerski, S., Pradhan, S., Huitema, B.E.: An overview of scientific reproducibility: consideration of relevant issues for behavior science\/analysis. Perspect. Behav. Sci. 42(1), 33\u201357 (2019). https:\/\/doi.org\/10.1007\/s40614-019-00193-3","journal-title":"Perspect. Behav. Sci."},{"key":"2_CR14","doi-asserted-by":"publisher","unstructured":"Liu, J., Wilson, A., Gunning, D.: Workflow-based human-in-the-loop data analytics. In: ACM International Conference Proceeding Series, pp. 49\u201352 (2014). https:\/\/doi.org\/10.1145\/2609876.2609888","DOI":"10.1145\/2609876.2609888"},{"issue":"5","key":"2_CR15","doi-asserted-by":"publisher","first-page":"541","DOI":"10.1016\/j.future.2008.06.013","volume":"25","author":"T McPhillips","year":"2009","unstructured":"McPhillips, T., Bowers, S., Zinn, D., Lud\u00e4scher, B.: Scientific workflow design for mere mortals. Futur. Gener. Comput. Syst. 25(5), 541\u2013551 (2009). https:\/\/doi.org\/10.1016\/j.future.2008.06.013","journal-title":"Futur. Gener. Comput. Syst."},{"key":"2_CR16","doi-asserted-by":"publisher","first-page":"151","DOI":"10.1016\/j.jprot.2014.04.018","volume":"106","author":"Y Mohammed","year":"2014","unstructured":"Mohammed, Y., et al.: PeptidePicker: a scientific workflow with web interface for selecting appropriate peptides for targeted proteomics experiments. J. Proteomics 106, 151\u2013161 (2014). https:\/\/doi.org\/10.1016\/j.jprot.2014.04.018","journal-title":"J. Proteomics"},{"key":"2_CR17","unstructured":"Newsletter, F.: What Is Negative Engineering? (2022). https:\/\/future.com\/negative-engineering-and-the-art-of-failing-successfully"},{"key":"2_CR18","first-page":"87","volume":"25","author":"JW Pinney","year":"2006","unstructured":"Pinney, J.W., Westhead, D.R.: Betweenness-based decomposition methods for social and biological networks. Interdis. Stat. Bioinf. 25, 87\u201390 (2006)","journal-title":"Interdis. Stat. Bioinf."},{"key":"2_CR19","unstructured":"Prefect Technologies Inc: Prefect. https:\/\/www.prefect.io"},{"key":"2_CR20","doi-asserted-by":"publisher","unstructured":"Rahman, S., Kandogan, E.: Characterizing practices, limitations, and opportunities related to text information extraction workflows: a human-in-the-loop perspective. In: Association for Computing Machinery (ACM), pp. 1\u201315 (2022). https:\/\/doi.org\/10.1145\/3491102.3502068","DOI":"10.1145\/3491102.3502068"},{"issue":"11","key":"2_CR21","doi-asserted-by":"publisher","first-page":"2498","DOI":"10.1101\/gr.1239303","volume":"13","author":"P Shannon","year":"2003","unstructured":"Shannon, P., et al.: Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 13(11), 2498\u20132504 (2003)","journal-title":"Genome Res."},{"key":"2_CR22","doi-asserted-by":"publisher","unstructured":"Smoot, M.E., Ono, K., Ruscheinski, J., Wang, P.L., Ideker, T.: Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics 27(3), 431\u2013432 (2010). https:\/\/doi.org\/10.1093\/bioinformatics\/btq675","DOI":"10.1093\/bioinformatics\/btq675"},{"key":"2_CR23","doi-asserted-by":"publisher","DOI":"10.1016\/j.ctrv.2020.102019","volume":"86","author":"AM Tsimberidou","year":"2020","unstructured":"Tsimberidou, A.M., Fountzilas, E., Nikanjam, M., Kurzrock, R.: Review of precision cancer medicine: evolution of the treatment paradigm. Cancer Treat. Rev. 86, 102019 (2020). https:\/\/doi.org\/10.1016\/j.ctrv.2020.102019","journal-title":"Cancer Treat. Rev."},{"key":"2_CR24","volume-title":"Python 3 Reference Manual","author":"G Van Rossum","year":"2009","unstructured":"Van Rossum, G., Drake, F.L.: Python 3 Reference Manual. CreateSpace, Scotts Valley (2009)"}],"container-title":["Lecture Notes in Computer Science","Advances in Bioinformatics and Computational Biology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-031-21175-1_2","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,12,15]],"date-time":"2022-12-15T08:04:19Z","timestamp":1671091459000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-3-031-21175-1_2"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022]]},"ISBN":["9783031211744","9783031211751"],"references-count":24,"URL":"https:\/\/doi.org\/10.1007\/978-3-031-21175-1_2","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2022]]},"assertion":[{"value":"16 December 2022","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}},{"value":"BSB","order":1,"name":"conference_acronym","label":"Conference Acronym","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Brazilian Symposium on Bioinformatics","order":2,"name":"conference_name","label":"Conference Name","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Buzios","order":3,"name":"conference_city","label":"Conference City","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Brazil","order":4,"name":"conference_country","label":"Conference Country","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2022","order":5,"name":"conference_year","label":"Conference Year","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"21 September 2022","order":7,"name":"conference_start_date","label":"Conference Start Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"23 September 2022","order":8,"name":"conference_end_date","label":"Conference End Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"wob2022","order":10,"name":"conference_id","label":"Conference ID","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"https:\/\/bsb.sbc.org.br\/2022\/","order":11,"name":"conference_url","label":"Conference URL","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Single-blind","order":1,"name":"type","label":"Type","group":{"name":"ConfEventPeerReviewInformation","label":"Peer Review Information (provided by the conference organizers)"}},{"value":"JEMS","order":2,"name":"conference_management_system","label":"Conference Management System","group":{"name":"ConfEventPeerReviewInformation","label":"Peer Review Information (provided by the conference organizers)"}},{"value":"23","order":3,"name":"number_of_submissions_sent_for_review","label":"Number of Submissions Sent for Review","group":{"name":"ConfEventPeerReviewInformation","label":"Peer Review Information (provided by the conference organizers)"}},{"value":"10","order":4,"name":"number_of_full_papers_accepted","label":"Number of Full Papers Accepted","group":{"name":"ConfEventPeerReviewInformation","label":"Peer Review Information (provided by the conference organizers)"}},{"value":"7","order":5,"name":"number_of_short_papers_accepted","label":"Number of Short Papers Accepted","group":{"name":"ConfEventPeerReviewInformation","label":"Peer Review Information (provided by the conference organizers)"}},{"value":"43% - The value is computed by the equation \"Number of Full Papers Accepted \/ Number of Submissions Sent for Review * 100\" and then rounded to a whole number.","order":6,"name":"acceptance_rate_of_full_papers","label":"Acceptance Rate of Full Papers","group":{"name":"ConfEventPeerReviewInformation","label":"Peer Review Information (provided by the conference organizers)"}},{"value":"3","order":7,"name":"average_number_of_reviews_per_paper","label":"Average Number of Reviews per Paper","group":{"name":"ConfEventPeerReviewInformation","label":"Peer Review Information (provided by the conference organizers)"}},{"value":"2","order":8,"name":"average_number_of_papers_per_reviewer","label":"Average Number of Papers per Reviewer","group":{"name":"ConfEventPeerReviewInformation","label":"Peer Review Information (provided by the conference organizers)"}},{"value":"No","order":9,"name":"external_reviewers_involved","label":"External Reviewers Involved","group":{"name":"ConfEventPeerReviewInformation","label":"Peer Review Information (provided by the conference organizers)"}}]}}