{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,28]],"date-time":"2025-03-28T00:08:40Z","timestamp":1743120520634,"version":"3.40.3"},"publisher-location":"Cham","reference-count":23,"publisher":"Springer Nature Switzerland","isbn-type":[{"type":"print","value":"9783031253799"},{"type":"electronic","value":"9783031253805"}],"license":[{"start":{"date-parts":[[2023,1,1]],"date-time":"2023-01-01T00:00:00Z","timestamp":1672531200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2023,1,1]],"date-time":"2023-01-01T00:00:00Z","timestamp":1672531200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2023]]},"DOI":"10.1007\/978-3-031-25380-5_6","type":"book-chapter","created":{"date-parts":[[2023,2,1]],"date-time":"2023-02-01T12:22:33Z","timestamp":1675254153000},"page":"75-86","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["A Decentralized Environment for\u00a0Biomedical Semantic Content Authoring and\u00a0Publishing"],"prefix":"10.1007","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-6374-0397","authenticated-orcid":false,"given":"Asim","family":"Abbas","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9137-407X","authenticated-orcid":false,"given":"Steve Fonin","family":"Mbouadeu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7022-6238","authenticated-orcid":false,"given":"Fazel","family":"Keshtkar","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Hasan Ali","family":"Khattak","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6824-6803","authenticated-orcid":false,"given":"Tahir","family":"Hameed","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6517-5261","authenticated-orcid":false,"given":"Syed Ahmad Chan","family":"Bukhari","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2023,2,2]]},"reference":[{"key":"6_CR1","doi-asserted-by":"crossref","unstructured":"Rigden, D.J., Fern\u00e1ndez, X.M.: The 2018 nucleic acids research database issue and the online molecular biology database collection. Nucleic Acids Res. 46(Database issue), D1 (2018)","DOI":"10.1093\/nar\/gkx1235"},{"issue":"4","key":"6_CR2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1000361","volume":"5","author":"D Shotton","year":"2009","unstructured":"Shotton, D., Portwin, K., Klyne, G., Miles, A.: Adventures in semantic publishing: exemplar semantic enhancements of a research article. PLoS Comput. Biol. 5(4), e1000361 (2009)","journal-title":"PLoS Comput. Biol."},{"key":"6_CR3","doi-asserted-by":"publisher","unstructured":"Brady, E., Zhong, Y., Bigham, J.P.: Creating accessible PDFs for conference proceedings. In: Proceedings of the 12th Web for All Conference (W4A 2015), pp. 34\u201337. ACM (2015). https:\/\/doi.org\/10.1145\/2745555.2746665","DOI":"10.1145\/2745555.2746665"},{"key":"6_CR4","doi-asserted-by":"crossref","unstructured":"Spinaci, G., et al.: The RASH JavaScript editor (RAJE) a wordprocessor for writing web-first scholarly articles. In: Proceedings of the 2017 ACM Symposium on Document Engineering, pp. 85\u201394 (2017)","DOI":"10.1145\/3103010.3103018"},{"key":"6_CR5","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"469","DOI":"10.1007\/978-3-319-60131-1_33","volume-title":"Web Engineering","author":"S Capadisli","year":"2017","unstructured":"Capadisli, S., Guy, A., Verborgh, R., Lange, C., Auer, S., Berners-Lee, T.: Decentralised authoring, annotations and notifications for a read-write web with dokieli. In: Cabot, J., De Virgilio, R., Torlone, R. (eds.) ICWE 2017. LNCS, vol. 10360, pp. 469\u2013481. Springer, Cham (2017). https:\/\/doi.org\/10.1007\/978-3-319-60131-1_33"},{"key":"6_CR6","doi-asserted-by":"publisher","DOI":"10.7717\/peerj-cs.132","volume":"3","author":"S Peroni","year":"2017","unstructured":"Peroni, S., et al.: Research articles in simplified HTML: a web-first format for HTML-based scholarly articles. PeerJ Comput. Sci. 3, e132 (2017)","journal-title":"PeerJ Comput. Sci."},{"key":"6_CR7","unstructured":"Lin, T.T.Y., Beales, G.: ScholarlyMarkdown Syntax Guide. Guide (2015). http:\/\/scholarlymarkdown.com\/"},{"key":"6_CR8","doi-asserted-by":"crossref","unstructured":"Warren, P., Davies, J., Brown, D.: The semantic web-from vision to reality. ICT futures: delivering pervasive, real-time and secure services, , pp. 55\u201366 (2008)","DOI":"10.1002\/9780470758656"},{"key":"6_CR9","doi-asserted-by":"crossref","unstructured":"Mbouadeu, S.F., Keshtkar, F., Bukhari, S.A.C.: Semantically: a framework for structured biomedical content authoring and publishing. In: ISWC (Posters\/Demos\/Industry) (2021)","DOI":"10.32473\/flairs.v35i.130665"},{"key":"6_CR10","doi-asserted-by":"crossref","unstructured":"Whetzel, P.L., et al.: BioPortal: enhanced functionality via new web services from the national center for biomedical ontology to access and use ontologies in software applications. Nucleic Acids Res. 39(Suppl. 2), W541\u2013W545 (2011)","DOI":"10.1093\/nar\/gkr469"},{"issue":"2","key":"6_CR11","first-page":"170","volume":"81","author":"BL Humphreys","year":"1993","unstructured":"Humphreys, B.L., Lindberg, D.: The UMLS project: making the conceptual connection between users and the information they need. Bull. Med. Libr. Assoc. 81(2), 170 (1993)","journal-title":"Bull. Med. Libr. Assoc."},{"key":"6_CR12","doi-asserted-by":"crossref","unstructured":"Abbas, A., et al.: Biomedical scholarly article editing and sharing using holistic semantic uplifting approach. In: The International FLAIRS Conference Proceedings, vol. 35 (2022)","DOI":"10.32473\/flairs.v35i.130695"},{"key":"6_CR13","doi-asserted-by":"crossref","unstructured":"Mbouadeu, S.F., et al.: A sociotechnical framework for semantic biomedical content authoring and publishing. In: The International FLAIRS Conference Proceedings, vol. 35 (2022)","DOI":"10.32473\/flairs.v35i.130665"},{"issue":"20","key":"6_CR14","doi-asserted-by":"publisher","first-page":"10564","DOI":"10.3390\/ijerph182010564","volume":"18","author":"A Abbas","year":"2021","unstructured":"Abbas, A., et al.: Clinical concept extraction with lexical semantics to support automatic annotation. Int. J. Environ. Res. Public Health 18(20), 10564 (2021)","journal-title":"Int. J. Environ. Res. Public Health"},{"key":"6_CR15","unstructured":"Jonquet, C., et al.: NCBO annotator: semantic annotation of biomedical data. In: International Semantic Web Conference, Poster and Demo Session, Washington DC, USA, vol. 110 (2009)"},{"key":"6_CR16","first-page":"56","volume":"2009","author":"C Jonquet","year":"2009","unstructured":"Jonquet, C., Shah, N.H., Musen, M.A.: The open biomedical annotator. Summit Transl. Bioinform. 2009, 56 (2009)","journal-title":"Summit Transl. Bioinform."},{"key":"6_CR17","unstructured":"Dai, M., et al.: An efficient solution for mapping free text to ontology terms. AMIA Summit Transl. Bioinform. 21 (2008)"},{"key":"6_CR18","first-page":"42","volume":"48","author":"A Abbas","year":"2019","unstructured":"Abbas, A., et al.: Meaningful information extraction from unstructured clinical documents. Proc. Asia-Pac. Adv. Netw. 48, 42\u201347 (2019)","journal-title":"Proc. Asia-Pac. Adv. Netw."},{"issue":"9","key":"6_CR19","doi-asserted-by":"publisher","first-page":"10","DOI":"10.1145\/2857274.2857276","volume":"13","author":"RV Guha","year":"2015","unstructured":"Guha, R.V., et al.: Schema.org: evolution of structured data on the web. Queue 13(9), 10\u201337 (2015). https:\/\/doi.org\/10.1145\/2857274.2857276","journal-title":"Queue"},{"key":"6_CR20","doi-asserted-by":"publisher","unstructured":"Michel, F.: \u201cThe bioschemas community\u201d, Bioschemas & Schema.org: a lightweight semantic layer for life sciences websites. In: Biodiversity Information Science and Standards, vol. 2, p. e25836 (2018). https:\/\/doi.org\/10.3897\/biss.2.25836","DOI":"10.3897\/biss.2.25836"},{"key":"6_CR21","doi-asserted-by":"crossref","unstructured":"Mbouadeu, S.F., et al.: Towards structured biomedical content authoring and publishing. In: 2022 IEEE 16th International Conference on Semantic Computing (ICSC). IEEE (2022)","DOI":"10.1109\/ICSC52841.2022.00036"},{"key":"6_CR22","doi-asserted-by":"publisher","first-page":"552","DOI":"10.1136\/amiajnl-2011-000203","volume":"18","author":"\u00d6 Uzuner","year":"2011","unstructured":"Uzuner, \u00d6., South, B.R., Shen, S., DuVall, S.L.: 2010 i2b2\/VA challenge on concepts, assertions, and relations in clinical text. J. Am. Med. Inform. Assoc. 18, 552\u2013556 (2011)","journal-title":"J. Am. Med. Inform. Assoc."},{"issue":"4","key":"6_CR23","doi-asserted-by":"publisher","first-page":"778","DOI":"10.1353\/pbm.2019.0046","volume":"62","author":"DM Hausman","year":"2019","unstructured":"Hausman, D.M.: What is cancer? Perspect. Biol. Med. 62(4), 778\u2013784 (2019)","journal-title":"Perspect. Biol. Med."}],"container-title":["Communications in Computer and Information Science","Current Trends in Web Engineering"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-031-25380-5_6","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,2,1]],"date-time":"2023-02-01T13:22:46Z","timestamp":1675257766000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-3-031-25380-5_6"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023]]},"ISBN":["9783031253799","9783031253805"],"references-count":23,"URL":"https:\/\/doi.org\/10.1007\/978-3-031-25380-5_6","relation":{},"ISSN":["1865-0929","1865-0937"],"issn-type":[{"type":"print","value":"1865-0929"},{"type":"electronic","value":"1865-0937"}],"subject":[],"published":{"date-parts":[[2023]]},"assertion":[{"value":"2 February 2023","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}},{"value":"ICWE","order":1,"name":"conference_acronym","label":"Conference Acronym","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"International Conference on Web Engineering","order":2,"name":"conference_name","label":"Conference Name","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Bari","order":3,"name":"conference_city","label":"Conference City","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Italy","order":4,"name":"conference_country","label":"Conference Country","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2022","order":5,"name":"conference_year","label":"Conference Year","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"5 July 2022","order":7,"name":"conference_start_date","label":"Conference Start Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"8 July 2022","order":8,"name":"conference_end_date","label":"Conference End Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"22","order":9,"name":"conference_number","label":"Conference Number","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"icwe2022","order":10,"name":"conference_id","label":"Conference ID","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"https:\/\/icwe2022.webengineering.org\/","order":11,"name":"conference_url","label":"Conference URL","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Single-blind","order":1,"name":"type","label":"Type","group":{"name":"ConfEventPeerReviewInformation","label":"Peer Review Information (provided by the conference organizers)"}},{"value":"Easychair","order":2,"name":"conference_management_system","label":"Conference Management System","group":{"name":"ConfEventPeerReviewInformation","label":"Peer Review Information (provided by the conference organizers)"}},{"value":"25","order":3,"name":"number_of_submissions_sent_for_review","label":"Number of Submissions Sent for Review","group":{"name":"ConfEventPeerReviewInformation","label":"Peer Review Information (provided by the conference organizers)"}},{"value":"14","order":4,"name":"number_of_full_papers_accepted","label":"Number of Full Papers Accepted","group":{"name":"ConfEventPeerReviewInformation","label":"Peer Review Information (provided by the conference organizers)"}},{"value":"1","order":5,"name":"number_of_short_papers_accepted","label":"Number of Short Papers Accepted","group":{"name":"ConfEventPeerReviewInformation","label":"Peer Review Information (provided by the conference organizers)"}},{"value":"56% - The value is computed by the equation \"Number of Full Papers Accepted \/ Number of Submissions Sent for Review * 100\" and then rounded to a whole number.","order":6,"name":"acceptance_rate_of_full_papers","label":"Acceptance Rate of Full Papers","group":{"name":"ConfEventPeerReviewInformation","label":"Peer Review Information (provided by the conference organizers)"}},{"value":"2\/3","order":7,"name":"average_number_of_reviews_per_paper","label":"Average Number of Reviews per Paper","group":{"name":"ConfEventPeerReviewInformation","label":"Peer Review Information (provided by the conference organizers)"}},{"value":"1","order":8,"name":"average_number_of_papers_per_reviewer","label":"Average Number of Papers per Reviewer","group":{"name":"ConfEventPeerReviewInformation","label":"Peer Review Information (provided by the conference organizers)"}},{"value":"No","order":9,"name":"external_reviewers_involved","label":"External Reviewers Involved","group":{"name":"ConfEventPeerReviewInformation","label":"Peer Review Information (provided by the conference organizers)"}}]}}