{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,27]],"date-time":"2025-03-27T14:15:15Z","timestamp":1743084915925,"version":"3.40.3"},"publisher-location":"Cham","reference-count":29,"publisher":"Springer Nature Switzerland","isbn-type":[{"type":"print","value":"9783031408427"},{"type":"electronic","value":"9783031408434"}],"license":[{"start":{"date-parts":[[2023,1,1]],"date-time":"2023-01-01T00:00:00Z","timestamp":1672531200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2023,1,1]],"date-time":"2023-01-01T00:00:00Z","timestamp":1672531200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2023]]},"DOI":"10.1007\/978-3-031-40843-4_34","type":"book-chapter","created":{"date-parts":[[2023,8,24]],"date-time":"2023-08-24T12:02:32Z","timestamp":1692878552000},"page":"458-471","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":1,"title":["Challenges and\u00a0Opportunities for\u00a0RISC-V Architectures Towards Genomics-Based Workloads"],"prefix":"10.1007","author":[{"given":"Gonzalo","family":"G\u00f3mez-S\u00e1nchez","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Aaron","family":"Call","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xavier","family":"Teruel","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lorena","family":"Alonso","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ignasi","family":"Moran","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Miguel \u00c1ngel","family":"P\u00e9rez","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"David","family":"Torrents","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Josep Ll.","family":"Berral","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2023,8,25]]},"reference":[{"key":"34_CR1","unstructured":"Accelerated European cloud. https:\/\/aero-project.eu. Accessed 16 Mar 2023"},{"key":"34_CR2","unstructured":"Android open source project ports to RISC-V. https:\/\/www.eenewseurope.com\/en\/android-open-source-project-ports-to-risc-v\/. Accessed 06 Mar 2023"},{"key":"34_CR3","unstructured":"Fedora\/RISC-V project homepage. https:\/\/fedoraproject.org\/wiki\/Architectures\/RISC-V. Accessed 23 Mar 2023"},{"key":"34_CR4","unstructured":"Genomics RISC-V open-data repository. https:\/\/github.com\/MortI2C\/genomics_riscv_openrepo\/. Accessed 23 Mar 2023"},{"key":"34_CR5","unstructured":"Hifive unmatched RISC-V board. https:\/\/www.sifive.com\/boards\/hifive-unmatched. Accessed 23 Mar 2023"},{"key":"34_CR6","unstructured":"OpenCube open-source cloud-based services on epi systems. https:\/\/cordis.europa.eu\/project\/id\/101092984. Accessed 16 Mar 2023"},{"key":"34_CR7","unstructured":"Project vitamin-v virtual environment and tool-boxing for trustworthy development of RISC-V based cloud services. https:\/\/vitamin-v.upc.edu. Accessed 16 Mar 2023"},{"key":"34_CR8","unstructured":"RISC-V shines at embedded world with new specs and processors. https:\/\/www.allaboutcircuits.com\/news\/risc-v-shines-at-embedded-world-with-new-specs-and-processors\/. Accessed 23 Mar 2023"},{"key":"34_CR9","unstructured":"Riser RISC-V for cloud services. https:\/\/www.riser-project.eu. Accessed 16 Mar 2023"},{"key":"34_CR10","unstructured":"Transaction processing performance council. https:\/\/www.tpc.org\/. Accessed 16 Mar 2023"},{"key":"34_CR11","unstructured":"Abella, J., et al.: An academic RISC-V silicon implementation based on open-source components. In: 2020 XXXV Conference on Design of Circuits and Integrated Systems (DCIS), pp. 1\u20136 (2020)"},{"issue":"1","key":"34_CR12","doi-asserted-by":"publisher","first-page":"6","DOI":"10.1016\/j.ajhg.2009.11.017","volume":"86","author":"RM Cantor","year":"2010","unstructured":"Cantor, R.M., et al.: Prioritizing GWAS results: a review of statistical methods and recommendations for their application. Am. J. Hum. Genet. 86(1), 6\u201322 (2010)","journal-title":"Am. J. Hum. Genet."},{"issue":"7576","key":"34_CR13","doi-asserted-by":"publisher","first-page":"S2","DOI":"10.1038\/527S2a","volume":"527","author":"M Eisenstein","year":"2015","unstructured":"Eisenstein, M.: Big data: the power of petabytes. Nature 527(7576), S2\u2013S4 (2015). https:\/\/doi.org\/10.1038\/527S2a","journal-title":"Nature"},{"key":"34_CR14","doi-asserted-by":"crossref","unstructured":"Fell, A., et al.: The marenostrum experimental exascale platform (MEEP). Supercomput. Front. Innov. 8(1), 62\u201381 (2021). https:\/\/superfri.org\/index.php\/superfri\/article\/view\/369","DOI":"10.14529\/jsfi210105"},{"key":"34_CR15","doi-asserted-by":"crossref","unstructured":"Ince, M.N., Ledet, J., Gunay, M.: Building an open source Linux computing system on RISC-V, pp. 1\u20134 (2019)","DOI":"10.1109\/UBMYK48245.2019.8965559"},{"issue":"2","key":"34_CR16","doi-asserted-by":"publisher","first-page":"157","DOI":"10.1002\/gepi.20042","volume":"28","author":"C Kooperberg","year":"2005","unstructured":"Kooperberg, C., Ruczinski, I.: Identifying interacting SNPS using Monte Carlo logic regression. Genet. Epidemiol.: Off. Publ. Int. Genet. Epidemiol. Soc. 28(2), 157\u2013170 (2005)","journal-title":"Genet. Epidemiol.: Off. Publ. Int. Genet. Epidemiol. Soc."},{"key":"34_CR17","doi-asserted-by":"publisher","unstructured":"Kova\u010d, M.: European processor initiative: the industrial cornerstone of EuroHPC for exascale era. In: Proceedings of the 16th ACM International Conference on Computing Frontiers, CF 2019, p. 319. Association for Computing Machinery, New York (2019). https:\/\/doi.org\/10.1145\/3310273.3323432","DOI":"10.1145\/3310273.3323432"},{"issue":"9","key":"34_CR18","doi-asserted-by":"publisher","first-page":"1639","DOI":"10.1101\/gr.092759.109","volume":"19","author":"M Krzywinski","year":"2009","unstructured":"Krzywinski, M., et al.: Circos: an information aesthetic for comparative genomics. Genome Res. 19(9), 1639\u20131645 (2009)","journal-title":"Genome Res."},{"key":"34_CR19","unstructured":"Luszczek, P., et al.: Introduction to the HPC Challenge Benchmark Suite (2005). https:\/\/www.osti.gov\/biblio\/860347"},{"issue":"1","key":"34_CR20","doi-asserted-by":"publisher","first-page":"13","DOI":"10.1038\/ng0105-13","volume":"37","author":"JH Moore","year":"2005","unstructured":"Moore, J.H.: A global view of epistasis. Nat. Genet. 37(1), 13\u201314 (2005)","journal-title":"Nat. Genet."},{"key":"34_CR21","doi-asserted-by":"publisher","first-page":"285","DOI":"10.3389\/fgene.2015.00285","volume":"6","author":"C Niel","year":"2015","unstructured":"Niel, C., Sinoquet, C., Dina, C., Rocheleau, G.: A survey about methods dedicated to epistasis detection. Front. Genet. 6, 285 (2015)","journal-title":"Front. Genet."},{"key":"34_CR22","doi-asserted-by":"publisher","first-page":"761","DOI":"10.1038\/gim.2013.72","volume":"15","author":"O Gottesman","year":"2013","unstructured":"Gottesman, O., et al.: The electronic medical records and genomics (emerge) network: past, present, and future. Genet. Med. 15, 761\u2013771 (2013)","journal-title":"Genet. Med."},{"key":"34_CR23","doi-asserted-by":"publisher","unstructured":"Ram\u00edrez, C., Hern\u00e1ndez, C.A., Palomar, O., Unsal, O., Ram\u00edrez, M.A., Cristal, A.: A RISC-V simulator and benchmark suite for designing and evaluating vector architectures. ACM Trans. Archit. Code Optim. 17(4) (2020). https:\/\/doi.org\/10.1145\/3422667","DOI":"10.1145\/3422667"},{"issue":"1","key":"34_CR24","doi-asserted-by":"publisher","first-page":"138","DOI":"10.1086\/321276","volume":"69","author":"MD Ritchie","year":"2001","unstructured":"Ritchie, M.D., et al.: Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer. Am. J. Hum. Genet. 69(1), 138\u2013147 (2001)","journal-title":"Am. J. Hum. Genet."},{"issue":"1","key":"34_CR25","doi-asserted-by":"publisher","first-page":"59","DOI":"10.1038\/s43586-021-00056-9","volume":"1","author":"E Uffelmann","year":"2021","unstructured":"Uffelmann, E., et al.: Genome-wide association studies. Nat. Rev. Methods Primers 1(1), 59 (2021)","journal-title":"Nat. Rev. Methods Primers"},{"key":"34_CR26","doi-asserted-by":"publisher","first-page":"E3","DOI":"10.1038\/nature13691","volume":"514","author":"AR Wood","year":"2014","unstructured":"Wood, A.R., et al.: Another explanation for apparent epistasis. Nature 514, E3\u2013E5 (2014)","journal-title":"Nature"},{"key":"34_CR27","doi-asserted-by":"crossref","unstructured":"Wu, Z., Hammad, K., Beyene, A., Dawji, Y., Ghafar-Zadeh, E., Magierowski, S.: An FPGA implementation of a portable DNA sequencing device based on RISC-V. In: 2022 20th IEEE Interregional NEWCAS Conference (NEWCAS), pp. 417\u2013420 (2022)","DOI":"10.1109\/NEWCAS52662.2022.9842014"},{"issue":"11","key":"34_CR28","doi-asserted-by":"publisher","first-page":"56","DOI":"10.1145\/2934664","volume":"59","author":"M Zaharia","year":"2016","unstructured":"Zaharia, M., et al.: Apache spark: a unified engine for big data processing. Commun. ACM 59(11), 56\u201365 (2016)","journal-title":"Commun. ACM"},{"issue":"9","key":"34_CR29","doi-asserted-by":"publisher","first-page":"1167","DOI":"10.1038\/ng2110","volume":"39","author":"Y Zhang","year":"2007","unstructured":"Zhang, Y., Liu, J.S.: Bayesian inference of epistatic interactions in case-control studies. Nat. Genet. 39(9), 1167\u20131173 (2007)","journal-title":"Nat. Genet."}],"container-title":["Lecture Notes in Computer Science","High Performance Computing"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-031-40843-4_34","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,8,24]],"date-time":"2023-08-24T12:07:17Z","timestamp":1692878837000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-3-031-40843-4_34"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023]]},"ISBN":["9783031408427","9783031408434"],"references-count":29,"URL":"https:\/\/doi.org\/10.1007\/978-3-031-40843-4_34","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2023]]},"assertion":[{"value":"25 August 2023","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}},{"value":"ISC High Performance","order":1,"name":"conference_acronym","label":"Conference Acronym","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"International Conference on High Performance Computing","order":2,"name":"conference_name","label":"Conference Name","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Hamburg","order":3,"name":"conference_city","label":"Conference City","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Germany","order":4,"name":"conference_country","label":"Conference Country","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2023","order":5,"name":"conference_year","label":"Conference Year","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"21 May 2023","order":7,"name":"conference_start_date","label":"Conference Start Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"25 May 2023","order":8,"name":"conference_end_date","label":"Conference End Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"38","order":9,"name":"conference_number","label":"Conference Number","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"supercomputing2023","order":10,"name":"conference_id","label":"Conference ID","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"https:\/\/www.isc-hpc.com\/","order":11,"name":"conference_url","label":"Conference URL","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Double-blind","order":1,"name":"type","label":"Type","group":{"name":"ConfEventPeerReviewInformation","label":"Peer Review Information (provided by the conference organizers)"}},{"value":"Linklings","order":2,"name":"conference_management_system","label":"Conference Management System","group":{"name":"ConfEventPeerReviewInformation","label":"Peer Review Information (provided by the conference organizers)"}},{"value":"70","order":3,"name":"number_of_submissions_sent_for_review","label":"Number of Submissions Sent for Review","group":{"name":"ConfEventPeerReviewInformation","label":"Peer Review Information (provided by the conference organizers)"}},{"value":"49","order":4,"name":"number_of_full_papers_accepted","label":"Number of Full Papers Accepted","group":{"name":"ConfEventPeerReviewInformation","label":"Peer Review Information (provided by the conference organizers)"}},{"value":"0","order":5,"name":"number_of_short_papers_accepted","label":"Number of Short Papers Accepted","group":{"name":"ConfEventPeerReviewInformation","label":"Peer Review Information (provided by the conference organizers)"}},{"value":"70% - The value is computed by the equation \"Number of Full Papers Accepted \/ Number of Submissions Sent for Review * 100\" and then rounded to a whole number.","order":6,"name":"acceptance_rate_of_full_papers","label":"Acceptance Rate of Full Papers","group":{"name":"ConfEventPeerReviewInformation","label":"Peer Review Information (provided by the conference organizers)"}},{"value":"3","order":7,"name":"average_number_of_reviews_per_paper","label":"Average Number of Reviews per Paper","group":{"name":"ConfEventPeerReviewInformation","label":"Peer Review Information (provided by the conference organizers)"}},{"value":"2","order":8,"name":"average_number_of_papers_per_reviewer","label":"Average Number of Papers per Reviewer","group":{"name":"ConfEventPeerReviewInformation","label":"Peer Review Information (provided by the conference organizers)"}},{"value":"No","order":9,"name":"external_reviewers_involved","label":"External Reviewers Involved","group":{"name":"ConfEventPeerReviewInformation","label":"Peer Review Information (provided by the conference organizers)"}}]}}