{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,27]],"date-time":"2026-01-27T22:54:20Z","timestamp":1769554460830,"version":"3.49.0"},"publisher-location":"Cham","reference-count":20,"publisher":"Springer Nature Switzerland","isbn-type":[{"value":"9783031812460","type":"print"},{"value":"9783031812477","type":"electronic"}],"license":[{"start":{"date-parts":[[2025,1,1]],"date-time":"2025-01-01T00:00:00Z","timestamp":1735689600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2025,1,1]],"date-time":"2025-01-01T00:00:00Z","timestamp":1735689600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2025]]},"DOI":"10.1007\/978-3-031-81247-7_6","type":"book-chapter","created":{"date-parts":[[2024,12,31]],"date-time":"2024-12-31T13:11:32Z","timestamp":1735650692000},"page":"71-83","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":1,"title":["Towards a\u00a0Parallel Code for\u00a0Cellular Behavior in\u00a0Vitro Prediction"],"prefix":"10.1007","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-7031-920X","authenticated-orcid":false,"given":"Pasquale","family":"De Luca","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5208-6219","authenticated-orcid":false,"given":"Ardelio","family":"Galletti","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2319-8008","authenticated-orcid":false,"given":"Livia","family":"Marcellino","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2025,1,1]]},"reference":[{"key":"6_CR1","doi-asserted-by":"crossref","unstructured":"Graner, F., Glazier, J.A.: Simulation of biological cell sorting using a two-dimensional extended Potts model. Phys. Rev. Lett. 69(13) (1992)","DOI":"10.1103\/PhysRevLett.69.2013"},{"issue":"8","key":"6_CR2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1003774","volume":"10","author":"RF van Oers","year":"2014","unstructured":"van Oers, R.F., Rens, E.G., LaValley, D.J., Reinhart-King, C.A., Merks, R.M.: Mechanical cell-matrix feedback explains pairwise and collective endothelial cell behavior in vitro. PLoS Comput. Biol. 10(8), e1003774 (2014)","journal-title":"PLoS Comput. Biol."},{"key":"6_CR3","unstructured":"David, K.: NVIDIA CUDA software and GPU parallel computing architecture. In :Proceedings of the 6th international symposium on Memory management (ISMM \u201907). Association for Computing Machinery, New York, NY, USA, pp. 103\u2013104 (2007)"},{"key":"6_CR4","doi-asserted-by":"crossref","unstructured":"Fiscale, S., et al.: A GPU algorithm for outliers detection in TESS light curves. In: International Conference on Computational Science, pp. 420\u2013432. Cham: Springer International Publishing (2021)","DOI":"10.1007\/978-3-030-77977-1_34"},{"key":"6_CR5","unstructured":"De Luca, P., Galletti, A., Marcellino, L.: Parallel solvers comparison for an inverse problem in fractional calculus. In: 2020 Proceeding of 9th International Conference on Theory and Practice in Modern Computing (TPMC 2020), pp. 197\u2013204 (2020)"},{"key":"6_CR6","doi-asserted-by":"crossref","unstructured":"Cuomo, S., Galletti, A., Marcellino, L.: A GPU algorithm in a distributed computing system for 3D MRI denoising. In: 2015 10th International Conference on P2P, Parallel, Grid, Cloud and Internet Computing (3PGCIC), pp. 557\u2013562. IEEE (2015)","DOI":"10.1109\/3PGCIC.2015.77"},{"key":"6_CR7","doi-asserted-by":"crossref","unstructured":"Cuomo, S., De Michele, P., Galletti, A., Marcellino, L.A.: GPU parallel implementation of the Local Principal Component Analysis overcomplete method for DW image denoising. Proc.-IEEE Symp. Comput. Commun. art. no. 7543709. 10, 26\u201331 (2016)","DOI":"10.1109\/ISCC.2016.7543709"},{"issue":"3","key":"6_CR8","doi-asserted-by":"publisher","first-page":"227","DOI":"10.1038\/nrc2329","volume":"8","author":"AR Anderson","year":"2008","unstructured":"Anderson, A.R., Quaranta, V.: Integrative mathematical oncology. Nat. Rev. Cancer 8(3), 227\u2013234 (2008)","journal-title":"Nat. Rev. Cancer"},{"key":"6_CR9","doi-asserted-by":"publisher","DOI":"10.1016\/j.physa.2021.125964","volume":"573","author":"Y Li","year":"2021","unstructured":"Li, Y., Yang, X., Wu, J., Sun, H., Guo, X., Zhou, L.: Discrete-event simulations for metro train operation under emergencies: A multi-agent based model with parallel computing. Phys. A 573, 125964 (2021)","journal-title":"Phys. A"},{"key":"6_CR10","doi-asserted-by":"publisher","DOI":"10.1016\/j.chaos.2020.110307","volume":"139","author":"N Ahmed","year":"2020","unstructured":"Ahmed, N., Rafiq, M., Adel, W., Rezazadeh, H., Khan, I., Nisar, K.S.: Structure preserving numerical analysis of HIV and CD4+ T-cells reaction diffusion model in two space dimensions. Chaos, Solitons Fract. 139, 110307 (2020)","journal-title":"Chaos, Solitons Fract."},{"issue":"1","key":"6_CR11","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1038\/s41598-016-0001-8","volume":"6","author":"C Giverso","year":"2016","unstructured":"Giverso, C., Ciarletta, P.: Tumour angiogenesis as a chemo-mechanical surface instability. Sci. Rep. 6(1), 1\u201311 (2016)","journal-title":"Sci. Rep."},{"issue":"3","key":"6_CR12","doi-asserted-by":"publisher","first-page":"2128","DOI":"10.1103\/PhysRevE.47.2128","volume":"47","author":"JA Glazier","year":"1993","unstructured":"Glazier, J.A., Graner, F.: Simulation of the differential adhesion driven rearrangement of biological cells. Phys. Rev. E 47(3), 2128 (1993)","journal-title":"Phys. Rev. E"},{"key":"6_CR13","doi-asserted-by":"publisher","first-page":"1819","DOI":"10.1007\/s11538-006-9071-2","volume":"68","author":"AN Tosin","year":"2006","unstructured":"Tosin, A.N., Ambrosi, D.A., Preziosi, L.U.: Mechanics and chemotaxis in the morphogenesis of vascular networks. Bull. Math. Biol. 68, 1819\u201336 (2006)","journal-title":"Bull. Math. Biol."},{"issue":"11\u201312","key":"6_CR14","doi-asserted-by":"publisher","first-page":"670","DOI":"10.1016\/j.cpc.2007.03.007","volume":"176","author":"N Chen","year":"2007","unstructured":"Chen, N., Glazier, J.A., Izaguirre, J.A., Alber, M.S.: A parallel implementation of the Cellular Potts Model for simulation of cell-based morphogenesis. Comput. Phys. Commun. 176(11\u201312), 670\u2013681 (2007)","journal-title":"Comput. Phys. Commun."},{"key":"6_CR15","doi-asserted-by":"crossref","unstructured":"Hattne, J., et al.: Analysis of global and site-specific radiation damage in cryo-EM. Structure 26(5), 759\u2013766 (2018)","DOI":"10.1016\/j.str.2018.03.021"},{"issue":"11","key":"6_CR16","doi-asserted-by":"publisher","first-page":"2340","DOI":"10.1016\/j.bpj.2014.04.036","volume":"106","author":"PJ Albert","year":"2014","unstructured":"Albert, P.J., Schwarz, U.S.: Dynamics of cell shape and forces on micropatterned substrates predicted by a cellular Potts model. Biophys. J. 106(11), 2340\u20132352 (2014)","journal-title":"Biophys. J."},{"issue":"6","key":"6_CR17","doi-asserted-by":"publisher","first-page":"1087","DOI":"10.1063\/1.1699114","volume":"21","author":"N Metropolis","year":"1953","unstructured":"Metropolis, N., Rosenbluth, A.W., Rosenbluth, M.N., Teller, A.H., Teller, E.: Equation of state calculations by fast computing machines. J. Chem. Phys. 21(6), 1087\u20131092 (1953)","journal-title":"J. Chem. Phys."},{"key":"6_CR18","volume-title":"The finite element method for solid and structural mechanics","author":"OC Zienkiewicz","year":"2005","unstructured":"Zienkiewicz, O.C., Taylor, R.L.: The finite element method for solid and structural mechanics. Elsevier (2005)"},{"issue":"9","key":"6_CR19","doi-asserted-by":"publisher","first-page":"L78","DOI":"10.1016\/j.bpj.2010.09.024","volume":"99","author":"CA Lemmon","year":"2010","unstructured":"Lemmon, C.A., Romer, L.H.: A predictive model of cell traction forces based on cell geometry. Biophys. J . 99(9), L78\u2013L80 (2010)","journal-title":"Biophys. J ."},{"key":"6_CR20","unstructured":"https:\/\/docs.nvidia.com\/cuda\/cusolver\/index.html"}],"container-title":["Lecture Notes in Computer Science","Numerical Computations: Theory and Algorithms"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-031-81247-7_6","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,12,31]],"date-time":"2024-12-31T14:09:12Z","timestamp":1735654152000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-3-031-81247-7_6"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025]]},"ISBN":["9783031812460","9783031812477"],"references-count":20,"URL":"https:\/\/doi.org\/10.1007\/978-3-031-81247-7_6","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"value":"0302-9743","type":"print"},{"value":"1611-3349","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025]]},"assertion":[{"value":"1 January 2025","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}},{"value":"NUMTA","order":1,"name":"conference_acronym","label":"Conference Acronym","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"International Conference on Numerical Computations: Theory and Algorithms","order":2,"name":"conference_name","label":"Conference Name","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Pizzo Calabro","order":3,"name":"conference_city","label":"Conference City","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Italy","order":4,"name":"conference_country","label":"Conference Country","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2023","order":5,"name":"conference_year","label":"Conference Year","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"14 June 2023","order":7,"name":"conference_start_date","label":"Conference Start Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"20 June 2023","order":8,"name":"conference_end_date","label":"Conference End Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"4","order":9,"name":"conference_number","label":"Conference Number","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"numta2023","order":10,"name":"conference_id","label":"Conference ID","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"https:\/\/www.numta.org\/","order":11,"name":"conference_url","label":"Conference URL","group":{"name":"ConferenceInfo","label":"Conference Information"}}]}}