{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,3]],"date-time":"2026-03-03T07:00:46Z","timestamp":1772521246328,"version":"3.50.1"},"publisher-location":"Cham","reference-count":11,"publisher":"Springer Nature Switzerland","isbn-type":[{"value":"9783031902512","type":"print"},{"value":"9783031902529","type":"electronic"}],"license":[{"start":{"date-parts":[[2025,1,1]],"date-time":"2025-01-01T00:00:00Z","timestamp":1735689600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2025,1,1]],"date-time":"2025-01-01T00:00:00Z","timestamp":1735689600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2025]]},"DOI":"10.1007\/978-3-031-90252-9_29","type":"book-chapter","created":{"date-parts":[[2025,4,24]],"date-time":"2025-04-24T20:03:16Z","timestamp":1745524996000},"page":"312-315","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":3,"title":["Inferring Cell Differentiation Maps from\u00a0Lineage Tracing Data"],"prefix":"10.1007","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-6581-4839","authenticated-orcid":false,"given":"Palash","family":"Sashittal","sequence":"first","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7712-1247","authenticated-orcid":false,"given":"Richard Y.","family":"Zhang","sequence":"additional","affiliation":[]},{"given":"Benjamin K.","family":"Law","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0132-3472","authenticated-orcid":false,"given":"Henri","family":"Schmidt","sequence":"additional","affiliation":[]},{"given":"Alexander","family":"Strzalkowski","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1096-9435","authenticated-orcid":false,"given":"Adriano","family":"Bolondi","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9451-9716","authenticated-orcid":false,"given":"Michelle M.","family":"Chan","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1274-048X","authenticated-orcid":false,"given":"Benjamin J.","family":"Raphael","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2025,4,25]]},"reference":[{"issue":"1","key":"29_CR1","doi-asserted-by":"publisher","first-page":"64","DOI":"10.1016\/0012-1606(83)90201-4","volume":"100","author":"JE Sulston","year":"1983","unstructured":"Sulston, J.E., et al.: The embryonic cell lineage of the nematode Caenorhabditis elegans. Dev. Biol. 100(1), 64\u2013119 (1983)","journal-title":"Dev. Biol."},{"issue":"1","key":"29_CR2","doi-asserted-by":"publisher","first-page":"33","DOI":"10.1016\/j.cell.2012.01.002","volume":"148","author":"K Kretzschmar","year":"2012","unstructured":"Kretzschmar, K., Watt, F.M.: Lineage tracing. Cell 148(1), 33\u201345 (2012)","journal-title":"Cell"},{"issue":"6","key":"29_CR3","doi-asserted-by":"publisher","first-page":"1535","DOI":"10.1016\/j.cell.2018.03.074","volume":"173","author":"JD Buenrostro","year":"2018","unstructured":"Buenrostro, J.D., et al.: Integrated single-cell analysis maps the continuous regulatory landscape of human hematopoietic differentiation. Cell 173(6), 1535\u2013154 (2018)","journal-title":"Cell"},{"issue":"24","key":"29_CR4","doi-asserted-by":"publisher","first-page":"4604","DOI":"10.1016\/j.cell.2022.10.028","volume":"185","author":"W Fang","year":"2022","unstructured":"Fang, W., et al.: Quantitative fate mapping: a general framework for analyzing progenitor state dynamics via retrospective lineage barcoding. Cell 185(24), 4604\u20134620 (2022)","journal-title":"Cell"},{"issue":"6392","key":"29_CR5","doi-asserted-by":"publisher","first-page":"981","DOI":"10.1126\/science.aar4362","volume":"360","author":"DE Wagner","year":"2018","unstructured":"Wagner, D.E., et al.: Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo. Science 360(6392), 981\u2013987 (2018)","journal-title":"Science"},{"issue":"7759","key":"29_CR6","doi-asserted-by":"publisher","first-page":"77","DOI":"10.1038\/s41586-019-1184-5","volume":"570","author":"MM Chan","year":"2019","unstructured":"Chan, M.M., et al.: Molecular recording of mammalian embryogenesis. Nature 570(7759), 77\u201382 (2019)","journal-title":"Nature"},{"issue":"11","key":"29_CR7","doi-asserted-by":"publisher","first-page":"1905","DOI":"10.1016\/j.cell.2022.04.015","volume":"185","author":"D Yang","year":"2022","unstructured":"Yang, D., et al.: Lineage tracing reveals the phylodynamics, plasticity, and paths of tumor evolution. Cell 185(11), 1905\u20131923 (2022)","journal-title":"Cell"},{"key":"29_CR8","doi-asserted-by":"crossref","unstructured":"Bolondi, A., et al.: Reconstructing axial progenitor field dynamics in mouse stem cell-derived embryoids. Dev. Cell (2024)","DOI":"10.1016\/j.devcel.2024.03.024"},{"key":"29_CR9","doi-asserted-by":"crossref","unstructured":"Weinreb, C., et al.: Lineage tracing on transcriptional landscapes links state to fate during differentiation. Science 367(6479) (2020)","DOI":"10.1126\/science.aaw3381"},{"issue":"1","key":"29_CR10","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/s13059-020-02000-8","volume":"21","author":"MG Jones","year":"2020","unstructured":"Jones, M.G., et al.: Inference of single-cell phylogenies from lineage tracing data using Cassiopeia. Genome Biol. 21(1), 1\u201327 (2020)","journal-title":"Genome Biol."},{"key":"29_CR11","doi-asserted-by":"crossref","unstructured":"Satopaa, V., Albrecht, J., Irwin, D., Raghavan, B.: Finding a \u201ckneedle\u201d in a haystack: Detecting knee points in system behavior. In: 31st International Conference on Distributed Computing Systems Workshops, pp. 166\u2013171. IEEE (2010)","DOI":"10.1109\/ICDCSW.2011.20"}],"container-title":["Lecture Notes in Computer Science","Research in Computational Molecular Biology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-031-90252-9_29","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,4,24]],"date-time":"2025-04-24T20:03:20Z","timestamp":1745525000000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-3-031-90252-9_29"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025]]},"ISBN":["9783031902512","9783031902529"],"references-count":11,"URL":"https:\/\/doi.org\/10.1007\/978-3-031-90252-9_29","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"value":"0302-9743","type":"print"},{"value":"1611-3349","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025]]},"assertion":[{"value":"25 April 2025","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}},{"value":"RECOMB","order":1,"name":"conference_acronym","label":"Conference Acronym","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"International Conference on Research in Computational Molecular Biology","order":2,"name":"conference_name","label":"Conference Name","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Seoul","order":3,"name":"conference_city","label":"Conference City","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Korea (Republic of)","order":4,"name":"conference_country","label":"Conference Country","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2025","order":5,"name":"conference_year","label":"Conference Year","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"26 April 2025","order":7,"name":"conference_start_date","label":"Conference Start Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"29 April 2025","order":8,"name":"conference_end_date","label":"Conference End Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"29","order":9,"name":"conference_number","label":"Conference Number","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"recomb2025","order":10,"name":"conference_id","label":"Conference ID","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"https:\/\/recomb.org\/recomb2025\/index.html","order":11,"name":"conference_url","label":"Conference URL","group":{"name":"ConferenceInfo","label":"Conference Information"}}]}}