{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,9,11]],"date-time":"2025-09-11T21:05:00Z","timestamp":1757624700115,"version":"3.44.0"},"publisher-location":"Cham","reference-count":36,"publisher":"Springer Nature Switzerland","isbn-type":[{"type":"print","value":"9783032014351"},{"type":"electronic","value":"9783032014368"}],"license":[{"start":{"date-parts":[[2025,8,19]],"date-time":"2025-08-19T00:00:00Z","timestamp":1755561600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2025,8,19]],"date-time":"2025-08-19T00:00:00Z","timestamp":1755561600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2026]]},"DOI":"10.1007\/978-3-032-01436-8_18","type":"book-chapter","created":{"date-parts":[[2025,8,18]],"date-time":"2025-08-18T03:24:47Z","timestamp":1755487487000},"page":"337-355","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Eukaryotic Ancestry in\u00a0a\u00a0Finite World"],"prefix":"10.1007","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-7854-3545","authenticated-orcid":false,"given":"Juliette","family":"Luiselli","sequence":"first","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5305-7372","authenticated-orcid":false,"given":"Manuel","family":"Lafond","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2025,8,19]]},"reference":[{"key":"18_CR1","doi-asserted-by":"publisher","unstructured":"Agranat-Tamir, L., Mooney, J.A., Rosenberg, N.A.: Counting the genetic ancestors from source populations in members of an admixed population. Genetics 226(4), iyae011 (2024). https:\/\/doi.org\/10.1093\/genetics\/iyae011","DOI":"10.1093\/genetics\/iyae011"},{"key":"18_CR2","doi-asserted-by":"publisher","unstructured":"Baird, S., Barton, N., Etheridge, A.: The distribution of surviving blocks of an ancestral genome. Theoretical Population Biol. 64(4), 451\u2013471 (2003). https:\/\/doi.org\/10.1016\/S0040-5809(03)00098-4","DOI":"10.1016\/S0040-5809(03)00098-4"},{"issue":"01","key":"18_CR3","doi-asserted-by":"publisher","first-page":"P01006","DOI":"10.1088\/1742-5468\/2013\/01\/P01006","volume":"2013","author":"\u00c9 Brunet","year":"2013","unstructured":"Brunet, \u00c9., Derrida, B.: Genealogies in simple models of evolution. J. Stat. Mech: Theory Exp. 2013(01), P01006 (2013)","journal-title":"J. Stat. Mech: Theory Exp."},{"issue":"2","key":"18_CR4","doi-asserted-by":"publisher","first-page":"141","DOI":"10.1016\/S0040-5809(03)00071-6","volume":"64","author":"N Chapman","year":"2003","unstructured":"Chapman, N., Thompson, E.: A model for the length of tracts of identity by descent in finite random mating populations. Theor. Popul. Biol. 64(2), 141\u2013150 (2003). https:\/\/doi.org\/10.1016\/S0040-5809(03)00071-6","journal-title":"Theor. Popul. Biol."},{"issue":"1","key":"18_CR5","doi-asserted-by":"publisher","first-page":"136","DOI":"10.1101\/gr.083634.108","volume":"19","author":"GK Chen","year":"2009","unstructured":"Chen, G.K., Marjoram, P., Wall, J.D.: Fast and flexible simulation of dna sequence data. Genome Res. 19(1), 136\u2013142 (2009)","journal-title":"Genome Res."},{"issue":"4","key":"18_CR6","doi-asserted-by":"publisher","first-page":"2151","DOI":"10.1534\/genetics.107.071126","volume":"177","author":"JL Davies","year":"2007","unstructured":"Davies, J.L., Siman\u010d\u00edk, F., Lyngs\u00f8, R., Mailund, T., Hein, J.: On recombination-induced multiple and simultaneous coalescent events. Genetics 177(4), 2151\u20132160 (2007). https:\/\/doi.org\/10.1534\/genetics.107.071126","journal-title":"Genetics"},{"issue":"3","key":"18_CR7","doi-asserted-by":"publisher","first-page":"277","DOI":"10.1023\/A:1004579800589","volume":"94","author":"B Derrida","year":"1999","unstructured":"Derrida, B., Jung-Muller, B.: The genealogical tree of a chromosome. J. Stat. Phys. 94(3), 277\u2013298 (1999). https:\/\/doi.org\/10.1023\/A:1004579800589","journal-title":"J. Stat. Phys."},{"issue":"3","key":"18_CR8","doi-asserted-by":"publisher","first-page":"303","DOI":"10.1006\/jtbi.2000.1095","volume":"203","author":"B Derrida","year":"2000","unstructured":"Derrida, B., Manrubia, S.C., Zanette, D.H.: On the genealogy of a population of biparental individuals. J. Theor. Biol. 203(3), 303\u201315 (2000)","journal-title":"J. Theor. Biol."},{"issue":"16","key":"18_CR9","doi-asserted-by":"publisher","first-page":"2064","DOI":"10.1093\/bioinformatics\/btq322","volume":"26","author":"G Ewing","year":"2010","unstructured":"Ewing, G., Hermisson, J.: Msms: a coalescent simulation program including recombination, demographic structure and selection at a single locus. Bioinformatics 26(16), 2064\u20132065 (2010). https:\/\/doi.org\/10.1093\/bioinformatics\/btq322","journal-title":"Bioinformatics"},{"issue":"9","key":"18_CR10","doi-asserted-by":"publisher","first-page":"1332","DOI":"10.1093\/bioinformatics\/btr124","volume":"27","author":"L Excoffier","year":"2011","unstructured":"Excoffier, L., Foll, M.: fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios. Bioinformatics 27(9), 1332\u20131334 (2011). https:\/\/doi.org\/10.1093\/bioinformatics\/btr124","journal-title":"Bioinformatics"},{"key":"18_CR11","doi-asserted-by":"publisher","unstructured":"Fisher, R.A.: Xxi.\u2014on the dominance ratio. Proceedings of the Royal Society of Edinburgh 42, 321\u2013341 (1923). https:\/\/doi.org\/10.1017\/S0370164600023993","DOI":"10.1017\/S0370164600023993"},{"key":"18_CR12","doi-asserted-by":"publisher","first-page":"47","DOI":"10.1016\/j.tpb.2015.02.002","volume":"101","author":"S Gravel","year":"2015","unstructured":"Gravel, S., Steel, M.: The existence and abundance of ghost ancestors in biparental populations. Theor. Popul. Biol. 101, 47\u201353 (2015). https:\/\/doi.org\/10.1016\/j.tpb.2015.02.002","journal-title":"Theor. Popul. Biol."},{"issue":"5","key":"18_CR13","doi-asserted-by":"publisher","first-page":"E127","DOI":"10.1073\/pnas.74.12.5463","volume":"201","author":"BC Haller","year":"2023","unstructured":"Haller, B.C., Messer, P.W.: Slim 4: multispecies eco-evolutionary modeling. Am. Nat. 201(5), E127\u2013E139 (2023). https:\/\/doi.org\/10.1073\/pnas.74.12.5463","journal-title":"Am. Nat."},{"issue":"1","key":"18_CR14","doi-asserted-by":"publisher","first-page":"297","DOI":"10.1534\/genetics.115.178004","volume":"202","author":"M Hartfield","year":"2016","unstructured":"Hartfield, M., Wright, S.I., Agrawal, A.F.: Coalescent times and patterns of genetic diversity in species with facultative sex: effects of gene conversion, population structure, and heterogeneity. Genetics 202(1), 297\u2013312 (2016). https:\/\/doi.org\/10.1534\/genetics.115.178004","journal-title":"Genetics"},{"key":"18_CR15","doi-asserted-by":"publisher","DOI":"10.1093\/oso\/9780198529958.001.0001","volume-title":"Gene genealogies, variation and evolution: a primer in coalescent theory","author":"J Hein","year":"2004","unstructured":"Hein, J., Schierup, M., Wiuf, C.: Gene genealogies, variation and evolution: a primer in coalescent theory. Oxford University Press, USA (2004)"},{"issue":"2","key":"18_CR16","doi-asserted-by":"publisher","first-page":"110","DOI":"10.1038\/nrg3130","volume":"13","author":"S Hoban","year":"2012","unstructured":"Hoban, S., Bertorelle, G., Gaggiotti, O.E.: Computer simulations: tools for population and evolutionary genetics. Nat. Rev. Genet. 13(2), 110\u2013122 (2012)","journal-title":"Nat. Rev. Genet."},{"issue":"2","key":"18_CR17","doi-asserted-by":"publisher","first-page":"183","DOI":"10.1016\/0040-5809(83)90013-8","volume":"23","author":"RR Hudson","year":"1983","unstructured":"Hudson, R.R.: Properties of a neutral allele model with intragenic recombination. Theor. Popul. Biol. 23(2), 183\u2013201 (1983)","journal-title":"Theor. Popul. Biol."},{"issue":"2","key":"18_CR18","doi-asserted-by":"publisher","first-page":"337","DOI":"10.1093\/bioinformatics\/18.2.337","volume":"18","author":"RR Hudson","year":"2002","unstructured":"Hudson, R.R.: Generating samples under a wright-fisher neutral model of genetic variation. Bioinformatics 18(2), 337\u2013338 (2002)","journal-title":"Bioinformatics"},{"issue":"5","key":"18_CR19","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1371\/journal.pcbi.1004842","volume":"12","author":"J Kelleher","year":"2016","unstructured":"Kelleher, J., Etheridge, A.M., McVean, G.: Efficient coalescent simulation and genealogical analysis for large sample sizes. PLoS Comput. Biol. 12(5), 1\u201322 (2016). https:\/\/doi.org\/10.1371\/journal.pcbi.1004842","journal-title":"PLoS Comput. Biol."},{"issue":"4","key":"18_CR20","doi-asserted-by":"publisher","first-page":"576","DOI":"10.1093\/bioinformatics\/btt712","volume":"30","author":"D Kessner","year":"2014","unstructured":"Kessner, D., Novembre, J.: forqs: forward-in-time simulation of recombination, quantitative traits and selection. Bioinformatics 30(4), 576\u2013577 (2014)","journal-title":"Bioinformatics"},{"key":"18_CR21","doi-asserted-by":"crossref","unstructured":"Laval, G., Excoffier, L.: Simcoal 2.0: a program to simulate genomic diversity over large recombining regions in a subdivided population with a complex history. Bioinformatics 20(15), 2485\u20132487 (2004)","DOI":"10.1093\/bioinformatics\/bth264"},{"issue":"1","key":"18_CR22","doi-asserted-by":"publisher","first-page":"69","DOI":"10.1146\/annurev-ecolsys-110316-022645","volume":"48","author":"AD Leach\u00e9","year":"2017","unstructured":"Leach\u00e9, A.D., Oaks, J.R.: The utility of single nucleotide polymorphism (snp) data in phylogenetics. Annu. Rev. Ecol. Evol. Syst. 48(1), 69\u201384 (2017). https:\/\/doi.org\/10.1146\/annurev-ecolsys-110316-022645","journal-title":"Annu. Rev. Ecol. Evol. Syst."},{"issue":"10","key":"18_CR23","doi-asserted-by":"publisher","DOI":"10.15252\/embr.202357561","volume":"24","author":"M Lynch","year":"2023","unstructured":"Lynch, M., Ali, F., Lin, T., Wang, Y., Ni, J., Long, H.: The divergence of mutation rates and spectra across the tree of life. EMBO Rep. 24(10), e57561 (2023)","journal-title":"EMBO Rep."},{"key":"18_CR24","doi-asserted-by":"publisher","first-page":"16","DOI":"10.1186\/1471-2156-7-16","volume":"7","author":"P Marjoram","year":"2006","unstructured":"Marjoram, P., Wall, J.: Fast \u201ccoalescent\u2019\u2019 simulation. BMC Genet. 7, 16\u201316 (2006)","journal-title":"BMC Genet."},{"key":"18_CR25","doi-asserted-by":"publisher","first-page":"1387","DOI":"10.1098\/rstb.2005.1673","volume":"360","author":"G McVean","year":"2005","unstructured":"McVean, G., Cardin, N.J.: Approximating the coalescent with recombination. Philosophical Trans. Roy. Soc. B: Biol. Sci. 360, 1387\u20131393 (2005)","journal-title":"Philosophical Trans. Roy. Soc. B: Biol. Sci."},{"issue":"6","key":"18_CR26","doi-asserted-by":"publisher","first-page":"1589","DOI":"10.1111\/j.1365-294X.2006.02851.x","volume":"15","author":"MH Muller","year":"2006","unstructured":"Muller, M.H., Poncet, C., Properi, J.M., Santoni, S., Ronfort, J.: Domestication history in the medicago sativa species complex: inferences from nuclear sequence polymorphism. Mol. Ecol. 15(6), 1589\u20131602 (2006). https:\/\/doi.org\/10.1111\/j.1365-294X.2006.02851.x","journal-title":"Mol. Ecol."},{"key":"18_CR27","unstructured":"Peters, O.R.: Pattern-defeating quicksort. arXiv preprint arXiv:2106.05123 (2021)"},{"issue":"4","key":"18_CR28","doi-asserted-by":"publisher","first-page":"839","DOI":"10.1239\/jap\/1067436085","volume":"40","author":"S Sagitov","year":"2003","unstructured":"Sagitov, S.: Convergence to the coalescent with simultaneous multiple mergers. J. Appl. Probab. 40(4), 839\u2013854 (2003)","journal-title":"J. Appl. Probab."},{"key":"18_CR29","volume-title":"Coalescents with simultaneous multiple collisions","author":"JR Schweinsberg","year":"2001","unstructured":"Schweinsberg, J.R.: Coalescents with simultaneous multiple collisions. University of California, Berkeley (2001)"},{"issue":"23","key":"18_CR30","doi-asserted-by":"publisher","first-page":"3427","DOI":"10.1093\/bioinformatics\/btu562","volume":"30","author":"I Shlyakhter","year":"2014","unstructured":"Shlyakhter, I., Sabeti, P.C., Schaffner, S.F.: Cosi2: an efficient simulator of exact and approximate coalescent with selection. Bioinformatics 30(23), 3427\u20133429 (2014)","journal-title":"Bioinformatics"},{"issue":"1","key":"18_CR31","doi-asserted-by":"publisher","first-page":"162","DOI":"10.1093\/schbul\/syp004","volume":"58","author":"J Sigwart","year":"2009","unstructured":"Sigwart, J.: Coalescent Theory: An Introduction. Syst. Biol. 58(1), 162\u2013165 (2009). https:\/\/doi.org\/10.1093\/schbul\/syp004","journal-title":"Syst. Biol."},{"issue":"20","key":"18_CR32","doi-asserted-by":"publisher","first-page":"3673","DOI":"10.1093\/bioinformatics\/btab261","volume":"37","author":"T Virgoulay","year":"2021","unstructured":"Virgoulay, T., Rousset, F., Leblois, R.: Gspace: an exact coalescence simulator of recombining genomes under isolation by distance. Bioinformatics 37(20), 3673\u20133675 (2021)","journal-title":"Bioinformatics"},{"key":"18_CR33","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/1471-2105-15-S12-S1","volume":"15","author":"Y Wang","year":"2014","unstructured":"Wang, Y., Zhou, Y., Li, L., Chen, X., Liu, Y., Ma, Z.M., Xu, S.: A new method for modeling coalescent processes with recombination. BMC Bioinform. 15, 1\u201312 (2014)","journal-title":"BMC Bioinform."},{"issue":"3","key":"18_CR34","doi-asserted-by":"publisher","first-page":"1459","DOI":"10.1093\/genetics\/147.3.1459","volume":"147","author":"C Wiuf","year":"1997","unstructured":"Wiuf, C., Hein, J.: On the Number of Ancestors to a DNA Sequence. Genetics 147(3), 1459\u20131468 (1997). https:\/\/doi.org\/10.1093\/genetics\/147.3.1459","journal-title":"Genetics"},{"issue":"2","key":"18_CR35","doi-asserted-by":"publisher","first-page":"97","DOI":"10.1093\/genetics\/16.2.97","volume":"16","author":"S Wright","year":"1931","unstructured":"Wright, S.: Evolution in mendelian populations. Genetics 16(2), 97 (1931)","journal-title":"Genetics"},{"issue":"1","key":"18_CR36","doi-asserted-by":"publisher","first-page":"42","DOI":"10.1089\/cmb.2010.0188","volume":"19","author":"X Yuan","year":"2012","unstructured":"Yuan, X., Miller, D.J., Zhang, J., Herrington, D., Wang, Y.: An overview of population genetic data simulation. J. Comput. Biol. 19(1), 42\u201354 (2012)","journal-title":"J. Comput. Biol."}],"container-title":["Lecture Notes in Computer Science","Computational Methods in Systems Biology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-032-01436-8_18","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,9,9]],"date-time":"2025-09-09T15:14:51Z","timestamp":1757430891000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-3-032-01436-8_18"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,8,19]]},"ISBN":["9783032014351","9783032014368"],"references-count":36,"URL":"https:\/\/doi.org\/10.1007\/978-3-032-01436-8_18","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2025,8,19]]},"assertion":[{"value":"19 August 2025","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}},{"value":"The authors\u00a0have no competing interests to declare.","order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Disclosure of Interests"}},{"value":"CMSB","order":1,"name":"conference_acronym","label":"Conference Acronym","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"International Conference on Computational Methods in Systems Biology","order":2,"name":"conference_name","label":"Conference Name","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Lyon","order":3,"name":"conference_city","label":"Conference City","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"France","order":4,"name":"conference_country","label":"Conference Country","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2025","order":5,"name":"conference_year","label":"Conference Year","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"10 September 2025","order":7,"name":"conference_start_date","label":"Conference Start Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"12 September 2025","order":8,"name":"conference_end_date","label":"Conference End Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"23","order":9,"name":"conference_number","label":"Conference Number","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"cmsb2025","order":10,"name":"conference_id","label":"Conference ID","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"https:\/\/cmsb2025.sciencesconf.org\/","order":11,"name":"conference_url","label":"Conference URL","group":{"name":"ConferenceInfo","label":"Conference Information"}}]}}