{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,26]],"date-time":"2025-03-26T14:11:57Z","timestamp":1742998317561,"version":"3.40.3"},"publisher-location":"Cham","reference-count":23,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319054001"},{"type":"electronic","value":"9783319054018"}],"license":[{"start":{"date-parts":[[2014,1,1]],"date-time":"2014-01-01T00:00:00Z","timestamp":1388534400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2014,1,1]],"date-time":"2014-01-01T00:00:00Z","timestamp":1388534400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2014]]},"DOI":"10.1007\/978-3-319-05401-8_21","type":"book-chapter","created":{"date-parts":[[2014,2,20]],"date-time":"2014-02-20T10:19:39Z","timestamp":1392891579000},"page":"217-229","source":"Crossref","is-referenced-by-count":0,"title":["EGIA \u2013 Evolutionary Optimisation of Gene Regulatory Networks, an Integrative Approach"],"prefix":"10.1007","author":[{"given":"Alina","family":"S\u00eerbu","sequence":"first","affiliation":[]},{"given":"Martin","family":"Crane","sequence":"additional","affiliation":[]},{"given":"Heather J.","family":"Ruskin","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"key":"21_CR1","doi-asserted-by":"publisher","DOI":"10.1201\/9781420034349","volume-title":"Evolutionary Computation 1: Basic Algorithms and Operators","author":"T. Baeck","year":"2000","unstructured":"Baeck, T., Fogel, D.B., Michalewicz, Z.: Evolutionary Computation 1: Basic Algorithms and Operators. Institute of Physics Publishing, Bristol and Philadelphia (2000)"},{"issue":"8","key":"21_CR2","doi-asserted-by":"publisher","first-page":"1747","DOI":"10.1093\/bioinformatics\/bti173","volume":"21","author":"C.M. Bergman","year":"2005","unstructured":"Bergman, C.M., Carlson, J.W., Celniker, S.E.: Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster. Bioinformatics\u00a021(8), 1747\u20131749 (2005)","journal-title":"Bioinformatics"},{"key":"21_CR3","unstructured":"modENCODE Consortium, T.: Identification of functional elements and regulatory circuits by drosophila modencode. Science (2010)"},{"issue":"3","key":"21_CR4","doi-asserted-by":"publisher","first-page":"918","DOI":"10.1073\/pnas.0711255105","volume":"105","author":"S.J. Elgar","year":"2008","unstructured":"Elgar, S.J., Han, J., Taylor, M.V.: Mef2 activity levels differentially affect gene expression during drosophila muscle development. Proceedings of the National Academy of Sciences of the United States of America\u00a0105(3), 918\u2013923 (2008)","journal-title":"Proceedings of the National Academy of Sciences of the United States of America"},{"key":"21_CR5","doi-asserted-by":"crossref","unstructured":"Estrada, B., Choe, S.E., Gisselbrecht, S.S., Michaud, S., Raj, L., Busser, B.W., Halfon, M.S., Church, G.M., Michelson, A.M.: An integrated strategy for analyzing the unique developmental programs of different myoblast subtypes. PLoS Genetics\u00a02(2), e16 (2006)","DOI":"10.1371\/journal.pgen.0020016"},{"issue":"3","key":"21_CR6","doi-asserted-by":"publisher","first-page":"479","DOI":"10.1083\/jcb.201004062","volume":"191","author":"R.M. Fox","year":"2010","unstructured":"Fox, R.M., Hanlon, C.D., Andrew, D.J.: The CrebA\/Creb3-like transcription factors are major and direct regulators of secretory capacity. The Journal of Cell Biology\u00a0191(3), 479\u2013492 (2010)","journal-title":"The Journal of Cell Biology"},{"issue":"1","key":"21_CR7","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/j.cosrev.2009.01.002","volume":"3","author":"A. Heath","year":"2009","unstructured":"Heath, A., Kavraki, L.: Computational challenges in systems biology. Computer Science Review\u00a03(1), 1\u201317 (2009)","journal-title":"Computer Science Review"},{"issue":"24","key":"21_CR8","doi-asserted-by":"publisher","first-page":"3267","DOI":"10.1093\/bioinformatics\/btp588","volume":"25","author":"C. Huttenhower","year":"2009","unstructured":"Huttenhower, C., Mutungu, K.T., Indik, N., Yang, W., Schroeder, M., Forman, J.J., Troyanskaya, O.G., Coller, H.A.: Detailing regulatory networks through large scale data integration. Bioinformatics\u00a025(24), 3267\u20133274 (2009)","journal-title":"Bioinformatics"},{"issue":"3","key":"21_CR9","doi-asserted-by":"publisher","first-page":"231","DOI":"10.1109\/TCBB.2005.40","volume":"2","author":"E. Keedwell","year":"2005","unstructured":"Keedwell, E., Narayanan, A.: Discovering gene networks with a neural-genetic hybrid. IEEE\/ACM Transactions on Computational Biology and Bioinformatics\u00a02(3), 231\u2013242 (2005)","journal-title":"IEEE\/ACM Transactions on Computational Biology and Bioinformatics"},{"issue":"4","key":"21_CR10","first-page":"408","volume":"10","author":"W.P. Lee","year":"2009","unstructured":"Lee, W.P., Tzou, W.S.: Computational methods for discovering gene networks from expression data. Briefings in Bioinformatics\u00a010(4), 408\u2013423 (2009)","journal-title":"Briefings in Bioinformatics"},{"issue":"5918","key":"21_CR11","doi-asserted-by":"publisher","first-page":"1218","DOI":"10.1126\/science.1157669","volume":"323","author":"J. Liu","year":"2009","unstructured":"Liu, J., Ghanim, M., Xue, L., Brown, C.D., Iossifov, I., Angeletti, C., Hua, S., Negre, N., Ludwig, M., Stricker, T., Al-Ahmadie, H.A., Tretiakova, M., Camp, R.L., Perera-Alberto, M., Rimm, D.L., Xu, T., Rzhetsky, A., White, K.P.: Analysis of Drosophila Segmentation Network Identifies a JNK Pathway Factor Overexpressed in Kidney Cancer. Science\u00a0323(5918), 1218\u20131222 (2009)","journal-title":"Science"},{"issue":"14","key":"21_CR12","doi-asserted-by":"publisher","first-page":"6286","DOI":"10.1073\/pnas.0913357107","volume":"107","author":"D. Marbach","year":"2010","unstructured":"Marbach, D., Prill, R.J., Schaffter, T., Mattiussi, C., Floreano, D., Stolovitzky, G.: Revealing strengths and weaknesses of methods for gene network inference. Proceedings of the National Academy of Sciences of the United States of America\u00a0107(14), 6286\u20136291 (2010)","journal-title":"Proceedings of the National Academy of Sciences of the United States of America"},{"issue":"suppl. 1","key":"21_CR13","doi-asserted-by":"crossref","first-page":"D736","DOI":"10.1093\/nar\/gkq1092","volume":"39","author":"T. Murali","year":"2011","unstructured":"Murali, T., Pacifico, S., Yu, J., Guest, S., Roberts, G.G., Finley, R.L.: DroID 2011: a comprehensive, integrated resource for protein, transcription factor, RNA and gene interactions for Drosophila. Nucleic Acids Research\u00a039(suppl. 1), D736\u2013D743 (2011)","journal-title":"Nucleic Acids Research"},{"key":"21_CR14","unstructured":"Ontology, G.: \n                    http:\/\/www.geneontology.org\/\n                   (accessed December 11, 2013)"},{"key":"21_CR15","unstructured":"Pollard, D.: Drosophila sequence specific transcription factor binding site matrices (2011), \n                    http:\/\/www.danielpollard.com\/matrices.html\n                   (accessed March 2011)"},{"issue":"1","key":"21_CR16","doi-asserted-by":"publisher","first-page":"15","DOI":"10.1093\/bib\/bbp057","volume":"11","author":"T.M. Przytycka","year":"2010","unstructured":"Przytycka, T.M., Singh, M., Slonim, D.K.: Toward the dynamic interactome: it\u2019s about time. Briefings in Bioinformatics\u00a011(1), 15\u201329 (2010)","journal-title":"Briefings in Bioinformatics"},{"issue":"9","key":"21_CR17","doi-asserted-by":"publisher","first-page":"1154","DOI":"10.1093\/bioinformatics\/btn083","volume":"24","author":"A.A. Shabalin","year":"2008","unstructured":"Shabalin, A.A., Tjelmeland, H., Fan, C., Perou, C.M., Nobel, A.B.: Merging two gene-expression studies via cross-platform normalization. Bioinformatics\u00a024(9), 1154\u20131160 (2008)","journal-title":"Bioinformatics"},{"key":"21_CR18","doi-asserted-by":"crossref","unstructured":"S\u00eerbu, A., Ruskin, H.J., Crane, M.: Comparison of evolutionary algorithms in gene regulatory network model inference. BMC Bioinformatics\u00a011(59) (2010)","DOI":"10.1186\/1471-2105-11-59"},{"key":"21_CR19","doi-asserted-by":"crossref","unstructured":"S\u00eerbu, A., Ruskin, H.J., Crane, M.: Regulatory network modelling: Correlation for structure and parameter optimisation. In: Karim, M., Lee, K., Ling, H., Maroudas, D., Sobh, T. (eds.) Proceedings of The IASTED Technology Conferences (International Conference on Computational Bioscience), Cambridge, Massachusetts (2010)","DOI":"10.2316\/P.2010.728-020"},{"issue":"19","key":"21_CR20","doi-asserted-by":"publisher","first-page":"3473","DOI":"10.1242\/dev.006080","volume":"134","author":"H. Toledano-Katchalski","year":"2007","unstructured":"Toledano-Katchalski, H., Nir, R., Volohonsky, G., Volk, T.: Post-transcriptional repression of the drosophila midkine and pleiotrophin homolog miple by how is essential for correct mesoderm spreading. Development\u00a0134(19), 3473\u20133481 (2007)","journal-title":"Development"},{"key":"21_CR21","doi-asserted-by":"crossref","unstructured":"Tomancak, P., Beaton, A., Weiszmann, R., Kwan, E., Shu, S., Lewis, S., Richards, S., Ashburner, M., Hartenstein, V., Celniker, S., Rubin, G.: Systematic determination of patterns of gene expression during Drosophila embryogenesis. Genome Biology\u00a03(12) (2002)","DOI":"10.1186\/gb-2002-3-12-research0088"},{"key":"21_CR22","unstructured":"Wessels, L.F.A., Reinders, M.J.T., Backer, E.: Robust genetic network modeling by adding noisy data. In: IEEE - EURASIP Workshop on Nonlinear Signal and Image Processing (2001)"},{"issue":"2","key":"21_CR23","doi-asserted-by":"publisher","first-page":"205","DOI":"10.1093\/bioinformatics\/btp632","volume":"26","author":"R. Xulvi-Brunet","year":"2010","unstructured":"Xulvi-Brunet, R., Li, H.: Co-expression networks: graph properties and topological comparisons. Bioinformatics\u00a026(2), 205\u2013214 (2010)","journal-title":"Bioinformatics"}],"container-title":["Studies in Computational Intelligence","Complex Networks V"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-05401-8_21","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,19]],"date-time":"2023-01-19T17:34:10Z","timestamp":1674149650000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-3-319-05401-8_21"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014]]},"ISBN":["9783319054001","9783319054018"],"references-count":23,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-05401-8_21","relation":{},"ISSN":["1860-949X","1860-9503"],"issn-type":[{"type":"print","value":"1860-949X"},{"type":"electronic","value":"1860-9503"}],"subject":[],"published":{"date-parts":[[2014]]}}}