{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,8]],"date-time":"2024-09-08T11:08:36Z","timestamp":1725793716179},"publisher-location":"Cham","reference-count":28,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319075501"},{"type":"electronic","value":"9783319075518"}],"license":[{"start":{"date-parts":[[2014,1,1]],"date-time":"2014-01-01T00:00:00Z","timestamp":1388534400000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2014]]},"DOI":"10.1007\/978-3-319-07551-8_25","type":"book-chapter","created":{"date-parts":[[2014,5,14]],"date-time":"2014-05-14T00:41:20Z","timestamp":1400028080000},"page":"291-302","source":"Crossref","is-referenced-by-count":2,"title":["MASSA: Multi-Agent System to Support Functional Annotation"],"prefix":"10.1007","author":[{"given":"Daniela","family":"Xavier","sequence":"first","affiliation":[]},{"given":"Berta","family":"Crespo","sequence":"additional","affiliation":[]},{"given":"Rub\u00e9n","family":"Fuentes-Fern\u00e1ndez","sequence":"additional","affiliation":[]},{"given":"Jorge J.","family":"G\u00f3mez-Sanz","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"key":"25_CR1","series-title":"Lecture Notes in Computer Science","volume-title":"Reasoning with Logic Programming","author":"J.J. Alferes","year":"1996","unstructured":"Alferes, J.J., Pereira, L.M.: Reasoning with Logic Programming. LNCS, vol.\u00a01111. Springer, Heidelberg (1996)"},{"issue":"17","key":"25_CR2","doi-asserted-by":"publisher","first-page":"3389","DOI":"10.1093\/nar\/25.17.3389","volume":"25","author":"S.F. Altschul","year":"1997","unstructured":"Altschul, S.F., Madden, T.L., Sch\u00e4ffer, A.A., Zhang, J., Zhang, Z., Miller, W., Lipman, D.J.: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research\u00a025(17), 3389\u20133402 (1997)","journal-title":"Nucleic Acids Research"},{"key":"25_CR3","doi-asserted-by":"crossref","unstructured":"Bellifemine, F., Poggi, A., Rimassa, G.: JADE: a FIPA2000 compliant agent development environment. In: Proceedings of the 5th International Conference on Autonomous Agents (AGENTS 2001), pp. 216\u2013217. ACM (2001)","DOI":"10.1145\/375735.376120"},{"key":"25_CR4","doi-asserted-by":"crossref","unstructured":"Benson, D.A., Cavanaugh, M., Clark, K., Karsch-Mizrachi, I., Lipman, D.J., Ostell, J., Sayers, E.W.: GenBank. Nucleic Acids Research 41(D1), D36\u2013D42 (2013)","DOI":"10.1093\/nar\/gks1195"},{"issue":"3","key":"25_CR5","doi-asserted-by":"publisher","first-page":"256","DOI":"10.1093\/bib\/bbl027","volume":"7","author":"O. Bodenreider","year":"2006","unstructured":"Bodenreider, O., Stevens, R.: Bio-ontologies: current trends and future directions. Briefings in Bioinformatics\u00a07(3), 256\u2013274 (2006)","journal-title":"Briefings in Bioinformatics"},{"issue":"10","key":"25_CR6","doi-asserted-by":"publisher","first-page":"917","DOI":"10.1080\/088395101753242688","volume":"15","author":"K. Bryson","year":"2001","unstructured":"Bryson, K., Luck, M., Joy, M., Jones, D.T.: Agent interaction for Bioinformatics data management. Applied Artificial Intelligence\u00a015(10), 917\u2013947 (2001)","journal-title":"Applied Artificial Intelligence"},{"key":"25_CR7","doi-asserted-by":"crossref","unstructured":"Crescenzi, P., Goldman, D., Papadimitriou, C.H., Piccolboni, A., Yannakakis, M.: On the complexity of protein folding. In: 2nd Annual International Conference on Computational Molecular Biology (RECOMB 1998), pp. 61\u201362. ACM (1998)","DOI":"10.1145\/279069.279089"},{"issue":"03n04","key":"25_CR8","doi-asserted-by":"publisher","first-page":"265","DOI":"10.1142\/S0218843002000595","volume":"11","author":"K. Decker","year":"2002","unstructured":"Decker, K., Khan, S., Schmidt, C., Situ, G., Makkena, R., Michaud, D.: BioMAS: a multi-agent system for genomic annotation. International Journal of Cooperative Information Systems\u00a011(03n04), 265\u2013292 (2002)","journal-title":"International Journal of Cooperative Information Systems"},{"key":"25_CR9","unstructured":"Giarratano, J.C., Riley, G.: Expert Systems: Principles and Programming. Computer Science Series. PWS Publishing Company (1998)"},{"key":"25_CR10","doi-asserted-by":"publisher","first-page":"198","DOI":"10.1186\/1471-2105-6-198","volume":"6","author":"P. Gouret","year":"2005","unstructured":"Gouret, P., Vitiello, V., Balandraud, N., Gilles, A., Pontarotti, P., Danchin, E.G.: FIGENIX: Intelligent automation of genomic annotation: expertise integration in a new software platform. BMC Bioinformatics\u00a06, 198 (2005), \n                    \n                      http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/16083500","journal-title":"BMC Bioinformatics"},{"key":"25_CR11","unstructured":"Lehninger, A.L., Nelson, D.L., Cox, M.M.: Lehninger Principles of Biochemistry, 5th edn. W. H. Freeman & Company (2008)"},{"issue":"2","key":"25_CR12","doi-asserted-by":"publisher","first-page":"117","DOI":"10.1017\/S0269888905000433","volume":"20","author":"M. Luck","year":"2005","unstructured":"Luck, M., Merelli, E.: Agents in Bioinformatics. Knowledge Engineering Review\u00a020(2), 117\u2013125 (2005)","journal-title":"Knowledge Engineering Review"},{"key":"25_CR13","doi-asserted-by":"crossref","unstructured":"Magrane, M., UniProt Consortium: UniProt knowledgebase: a hub of integrated protein data. Database 2011, bar009 (2011)","DOI":"10.1093\/database\/bar009"},{"key":"25_CR14","doi-asserted-by":"crossref","unstructured":"Marchler-Bauer, A., Lu, S., Anderson, J.B., Chitsaz, F., Derbyshire, M.K., DeWeese-Scott, C., Fong, J.H., Geer, L.Y., Geer, R.C., Gonzales, N.R., Gwadz, M., Hurwitz, D.I., Jackson, J.D., Ke, Z., Lanczycki, C.J., Lu, F., Marchler, G.H., Mullokandov, M., Omelchenko, M.V., Robertson, C.L., Song, J.S., Thanki, N., Yamashita, R.A., Zhang, D., Zhang, N., Zheng, C., Bryant, S.H.: CDD: conserved domains and protein three-dimensional structure. Nucleic Acids Research 41(D1), D348\u2013D352 (2013)","DOI":"10.1093\/nar\/gks1243"},{"issue":"3","key":"25_CR15","doi-asserted-by":"publisher","first-page":"219","DOI":"10.1093\/bioinformatics\/15.3.219","volume":"15","author":"S. M\u00f6ller","year":"1999","unstructured":"M\u00f6ller, S., Leser, U., Fleischmann, W., Apweiler, R.: EDITtoTrEMBL: a distributed approach to high-quality automated protein sequence annotation. Bioinformatics\u00a015(3), 219\u2013227 (1999)","journal-title":"Bioinformatics"},{"key":"25_CR16","unstructured":"NCBI: \n                    \n                      http:\/\/www.ncbi.nlm.nih.gov\n                    \n                    \n                  , (accessed December 20, 2013)"},{"key":"25_CR17","doi-asserted-by":"crossref","unstructured":"NCBI Resource Coordinators: Database resources of the National Center for Biotechnology Information. Nucleic Acids Research 41(D1), D8\u2013D20 (2013)","DOI":"10.1093\/nar\/gks1189"},{"key":"25_CR18","doi-asserted-by":"crossref","unstructured":"Pav\u00f3n, J., G\u00f3mez-Sanz, J.J., Fuentes, R.: The INGENIAS methodology and tools. In: Agent-Oriented Methodologies, pp. 236\u2013276. Idea Group Publishing (2005)","DOI":"10.4018\/978-1-59140-581-8.ch009"},{"issue":"5","key":"25_CR19","doi-asserted-by":"publisher","first-page":"934","DOI":"10.1101\/gr.1859804","volume":"14","author":"S.C. Potter","year":"2004","unstructured":"Potter, S.C., Clarke, L., Curwen, V., Keenan, S., Mongin, E., Searle, S.M.J., Stabenau, A., Storey, R., Clamp, M.: The Ensembl Analysis Pipeline. Genome Research\u00a014(5), 934\u2013941 (2004)","journal-title":"Genome Research"},{"key":"25_CR20","doi-asserted-by":"crossref","unstructured":"Quevillon, E., Silventoinen, V., Pillai, S., Harte, N., Mulder, N., Apweiler, R., Lopez, R.: InterProScan: protein domains identifier. Nucleic Acids Research 33(2), W116\u2013W120 (2005)","DOI":"10.1093\/nar\/gki442"},{"issue":"5","key":"25_CR21","doi-asserted-by":"publisher","first-page":"1041","DOI":"10.1006\/jmbi.2000.5197","volume":"314","author":"M. Remm","year":"2001","unstructured":"Remm, M., Storm, C.E.V., Sonnhammer, E.L.L.: Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. Journal of Molecular Biology\u00a0314(5), 1041\u20131052 (2001)","journal-title":"Journal of Molecular Biology"},{"key":"25_CR22","volume-title":"Knowledge Engineering and Management \u2013 The CommonKADS Methodology","author":"G. Schreiber","year":"2000","unstructured":"Schreiber, G., Akkermans, H., Anjewierden, A., de Hoog, R., Shadbolt, N., Van de Velde, W., Wielinga, B.: Knowledge Engineering and Management \u2013 The CommonKADS Methodology. MIT Press, Cambridge (2000)"},{"issue":"1","key":"25_CR23","doi-asserted-by":"publisher","first-page":"92","DOI":"10.1093\/bioinformatics\/18.1.92","volume":"18","author":"C.E.V. Storm","year":"2002","unstructured":"Storm, C.E.V., Sonnhammer, E.L.L.: Automated ortholog inference from phylogenetic trees and calculation of orthology reliability. Bioinformatics\u00a018(1), 92\u201399 (2002)","journal-title":"Bioinformatics"},{"key":"25_CR24","doi-asserted-by":"crossref","unstructured":"The Gene Ontology Consortium: Gene Ontology: tool for the unification of Biology. Nature Genetics 25(1), 25\u201329 (2000)","DOI":"10.1038\/75556"},{"key":"25_CR25","unstructured":"The JBoss Drools Team: Drools expert user guide (May 2012), \n                    \n                      http:\/\/docs.jboss.org\/drools\/release\/5.4.0.Final\/drools-expert-docs\/pdf\/drools-expert-docs.pdf\n                    \n                    \n                   (accessed December 20, 2013)"},{"key":"25_CR26","unstructured":"Welcome Trust Sanger Institute: GFF (General Feature Format) specifications document. (December 2012), \n                    \n                      http:\/\/www.sanger.ac.uk\/resources\/software\/gff\/spec.html\n                    \n                    \n                   (accessed December 20, 2013)"},{"key":"25_CR27","doi-asserted-by":"crossref","unstructured":"Wolstencroft, K., Haines, R., Fellows, D., Williams, A., Withers, D., Owen, S., Soiland-Reyes, S., Dunlop, I., Nenadic, A., Fisher, P., Bhagat, J., Belhajjame, K., Bacall, F., Hardisty, A., de la Hidalga, A.N., Balcazar\u00a0Vargas, M.P., Sufi, S., Goble, C.: The taverna workflow suite: designing and executing workflows of web services on the desktop, web or in the cloud. Nucleic Acids Research 41(W1), W557\u2013W561 (2013)","DOI":"10.1093\/nar\/gkt328"},{"issue":"10","key":"25_CR28","doi-asserted-by":"publisher","first-page":"3943","DOI":"10.1016\/j.eswa.2012.12.088","volume":"40","author":"D. Xavier","year":"2013","unstructured":"Xavier, D., Mor\u00e1n, F., Fuentes-Fern\u00e1ndez, R., Pajares, G.: Modelling knowledge strategy for solving the DNA sequence annotation problem through CommonKADS methodology. Expert Systems with Applications\u00a040(10), 3943\u20133952 (2013)","journal-title":"Expert Systems with Applications"}],"container-title":["Lecture Notes in Computer Science","Advances in Practical Applications of Heterogeneous Multi-Agent Systems. The PAAMS Collection"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-07551-8_25","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,26]],"date-time":"2019-05-26T16:26:56Z","timestamp":1558888016000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-319-07551-8_25"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014]]},"ISBN":["9783319075501","9783319075518"],"references-count":28,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-07551-8_25","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2014]]}}}