{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,2,21]],"date-time":"2025-02-21T00:17:39Z","timestamp":1740097059957,"version":"3.37.3"},"publisher-location":"Cham","reference-count":19,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319079523"},{"type":"electronic","value":"9783319079530"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2014]]},"DOI":"10.1007\/978-3-319-07953-0_14","type":"book-chapter","created":{"date-parts":[[2014,6,10]],"date-time":"2014-06-10T16:58:08Z","timestamp":1402419488000},"page":"171-182","source":"Crossref","is-referenced-by-count":14,"title":["Efficiently Enumerating All Connected Induced Subgraphs of a Large Molecular Network"],"prefix":"10.1007","author":[{"given":"Sean","family":"Maxwell","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mark R.","family":"Chance","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mehmet","family":"Koyut\u00fcrk","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"14_CR1","unstructured":"Avis, D., Fukuda, K.: Reverse search for enumeration. Discrete Applied Mathematics (1993)"},{"key":"14_CR2","doi-asserted-by":"crossref","unstructured":"Bollobas, B.: Hereditary properties of graphs asymptotic enumeration global structure and colouring. Documenta Mathematica, 333\u2013342 (1998)","DOI":"10.4171\/dms\/1-3\/33"},{"key":"14_CR3","doi-asserted-by":"crossref","unstructured":"Chowdhury, S., Koyuturk, M.: Identification of coordinately dysregulated subnetworks in complex phenotypes. In: Berger, B. (ed.) Pacific Symposium on Biocomputing, pp. 133\u2013144 (2010)","DOI":"10.1142\/9789814295291_0016"},{"issue":"3","key":"14_CR4","doi-asserted-by":"publisher","first-page":"263","DOI":"10.1089\/cmb.2010.0269","volume":"18","author":"S. Chowdhury","year":"2011","unstructured":"Chowdhury, S., Nibbe, R., Chance, M., Koyuturk, M.: Subnetwork state functions define dysregulated subnetworks in cancer. Journal of Computational Biology\u00a018(3), 263\u2013281 (2011)","journal-title":"Journal of Computational Biology"},{"key":"14_CR5","doi-asserted-by":"crossref","unstructured":"Chuang, H.Y., Lee, E., Yu-Tsueng, L.D., Ideker, T.: Network-based classification of breast cancer metastasis. Molecular Systems Biology (2007)","DOI":"10.1038\/msb4100180"},{"key":"14_CR6","doi-asserted-by":"crossref","unstructured":"Dao, P., Wang, K., Collins, C., Ester, M., Lapuk, A., Sahinalp1, S.C.: Optimally discriminative subnetwork markers predict response to chemotherapy. Bioinformatics (July 2011)","DOI":"10.1093\/bioinformatics\/btr245"},{"key":"14_CR7","doi-asserted-by":"crossref","unstructured":"Flannick, J., Novak, A., Srinivasan, B., McAdams, H., Batzoglou, S.: Graemlin: General and robust alignment of multiple large interaction networks. Genome Research (2006)","DOI":"10.1101\/gr.5235706"},{"key":"14_CR8","doi-asserted-by":"crossref","unstructured":"Hopcroft, J., Tarjan, R.: Efficient algorithms for graph manipulation. Communications of the ACM\u00a016(6) (1973)","DOI":"10.1145\/362248.362272"},{"key":"14_CR9","doi-asserted-by":"crossref","unstructured":"Ideker, T., Ozier, O., Schwikowski, B., Siegel, A.F.: Discovering regulatory and signalling circuits in molecular interaction networks. Bioinformatics\u00a018(suppl. 1), S233\u2013S240 (2002), http:\/\/dx.doi.org\/10.1093\/bioinformatics\/18.suppl_1.s233","DOI":"10.1093\/bioinformatics\/18.suppl_1.S233"},{"issue":"1","key":"14_CR10","doi-asserted-by":"publisher","first-page":"95","DOI":"10.1093\/bioinformatics\/btq615","volume":"27","author":"P. Jia","year":"2011","unstructured":"Jia, P., Zheng, S., Long, J., Zheng, W., Zhao, Z.: dmGWAS: dense module searching for genome-wide association studies in protein-protein interaction networks. Bioinformatics\u00a027(1), 95\u2013102 (2011)","journal-title":"Bioinformatics"},{"key":"14_CR11","doi-asserted-by":"crossref","unstructured":"Kalaev, M., Smoot, M., Ideker, T., Sharan, R.: Networkblast: comparative analysis of protein networks. Bioinformatics (2008)","DOI":"10.1093\/bioinformatics\/btm630"},{"key":"14_CR12","unstructured":"Karakashian, S., Choueiry, B.Y., Hartke, S.G.: An algorithm for generating all connected subgraphs with k vertices of a graph (May 2013), http:\/\/www.math.unl.edu\/~shartke2\/math\/papers\/k-subgraphs.pdf"},{"key":"14_CR13","doi-asserted-by":"publisher","first-page":"767","DOI":"10.1093\/nar\/gkn892","volume":"37","author":"P. Kesheva","year":"2009","unstructured":"Kesheva, P., et al.: Human protein reference database: 2009 update. Nucleic Acids Research\u00a037, 767\u2013772 (2009)","journal-title":"Nucleic Acids Research"},{"key":"14_CR14","unstructured":"Knuth, D.: The Art of Computer Programming, Combinatorial Algorithms Part 1, vol.\u00a04. Addison-Wesley (2012)"},{"key":"14_CR15","unstructured":"Konga, B., Yanga, T., Chenb, L., Qin Kuanga, Y., Wen Gua, J., Xiaa, X., Chenga, L., Hai Zhang, J.: Proteinprotein interaction network analysis and gene set enrichment analysis in epilepsy patients with brain cancer. Journal of Clinical Neuroscience (2013)"},{"key":"14_CR16","doi-asserted-by":"crossref","unstructured":"Koyut\u00fcrk, M., Kim, Y., Subramaniam, S., Szpankowski, W., Grama, A.: Detecting conserved interaction patterns in biological networks. Journal of Computational Biology (2006)","DOI":"10.1089\/cmb.2006.13.1299"},{"key":"14_CR17","doi-asserted-by":"crossref","unstructured":"Leskovec, J., Kleinberg, J., Faloutsos, C.: Graph evolution: Densification and shrinking diameters. ACM Transactions on Knowledge Discovery from Data (2007)","DOI":"10.1145\/1217299.1217301"},{"key":"14_CR18","doi-asserted-by":"crossref","unstructured":"Patel, V., Gokulrangan, G., Chowdhury, S., Chen, Y., Sloan, A., Koyutrk, M., Barnholtz-Sloan, J., Chance, M.: Network signatures of survival in glioblastoma multiforme. PLOS Computational Biology\u00a09 (2013)","DOI":"10.1371\/journal.pcbi.1003237"},{"key":"14_CR19","unstructured":"Rymon, R.: Search through systematic set enumeration. Tech. rep., University of Pennsylvania (August 1992)"}],"container-title":["Lecture Notes in Computer Science","Algorithms for Computational Biology"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-07953-0_14","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,7,14]],"date-time":"2023-07-14T05:02:32Z","timestamp":1689310952000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-319-07953-0_14"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014]]},"ISBN":["9783319079523","9783319079530"],"references-count":19,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-07953-0_14","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2014]]}}}