{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,8]],"date-time":"2024-09-08T11:57:05Z","timestamp":1725796625601},"publisher-location":"Cham","reference-count":24,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319093291"},{"type":"electronic","value":"9783319093307"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2014]]},"DOI":"10.1007\/978-3-319-09330-7_33","type":"book-chapter","created":{"date-parts":[[2014,7,3]],"date-time":"2014-07-03T13:23:37Z","timestamp":1404393817000},"page":"271-279","source":"Crossref","is-referenced-by-count":0,"title":["Predicting Protein-Protein Interaction Sites by Rotation Forests with Evolutionary Information"],"prefix":"10.1007","author":[{"given":"Xinying","family":"Hu","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Anqi","family":"Jing","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xiuquan","family":"Du","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"issue":"1-2","key":"33_CR1","doi-asserted-by":"publisher","first-page":"81","DOI":"10.1016\/0014-5793(96)00327-4","volume":"385","author":"R.M. Kini","year":"1996","unstructured":"Kini, R.M., Evans, H.J.: Prediction of potential protein-protein interaction sites from amino acid sequence identification of a fibrin polymerization site. FEBS Lett.\u00a0385(1-2), 81\u201386 (1996)","journal-title":"FEBS Lett."},{"issue":"4","key":"33_CR2","doi-asserted-by":"publisher","first-page":"1239","DOI":"10.1002\/prot.24022","volume":"80","author":"N. Tuncbag","year":"2012","unstructured":"Tuncbag, N., Keskin, O., Nussinov, R., Gursoy, A.: Fast and accurate modeling of protein\u2013protein interactions by combining template-interface-based docking with flexible refinement. Proteins: Structure, Function, and Bioinformatics\u00a080(4), 1239\u20131249 (2012)","journal-title":"Proteins: Structure, Function, and Bioinformatics"},{"issue":"2","key":"33_CR3","doi-asserted-by":"publisher","first-page":"3220","DOI":"10.3390\/ijms15023220","volume":"15","author":"S.W. Zhang","year":"2014","unstructured":"Zhang, S.W., Hao, L.Y., Zhang, T.H.: Prediction of protein\u2013protein interaction with pairwise kernel Support Vector Machine. International Journal of Molecular Sciences\u00a015(2), 3220\u20133233 (2014)","journal-title":"International Journal of Molecular Sciences"},{"issue":"3","key":"33_CR4","doi-asserted-by":"publisher","first-page":"940","DOI":"10.1021\/ci6005257","volume":"47","author":"J. Konc","year":"2007","unstructured":"Konc, J., Janezic, D.: Protein-protein binding-sites prediction by protein surface structure conservation. J. Chem. Inf. Model.\u00a047(3), 940\u2013944 (2007)","journal-title":"J. Chem. Inf. Model."},{"issue":"4","key":"33_CR5","doi-asserted-by":"publisher","first-page":"402","DOI":"10.1016\/j.compbiomed.2011.12.007","volume":"42","author":"C. Yuehui","year":"2012","unstructured":"Yuehui, C., Jingru, X., Bin, Y., Yaou, Z., Wenxing, H.: A novel method for prediction for protein interaction sites based on integrated RBF neural networks. Computers in Biology and Medicine\u00a042(4), 402\u2013407 (2012)","journal-title":"Computers in Biology and Medicine"},{"key":"33_CR6","doi-asserted-by":"crossref","unstructured":"You, Z.H., Lei, Y.K., Zhu, L., Xia, J., Wang, B.: Prediction of protein-protein interactions from amino acid sequences with ensemble extreme learning machines and principal component analysis. BMC Bioinformatics\u00a014(suppl. 8), S10 (2013)","DOI":"10.1186\/1471-2105-14-S8-S10"},{"key":"33_CR7","doi-asserted-by":"publisher","first-page":"1356","DOI":"10.1046\/j.1432-1033.2002.02767.x","volume":"269","author":"P. Fariselli","year":"2002","unstructured":"Fariselli, P., Pazos, F., Valencia, A., Casadia, R.: Prediction of protein-protein interaction sites in heterocomplexes with neural networks. Eur. J. Biochem.\u00a0269, 1356\u20131361 (2002)","journal-title":"Eur. J. Biochem."},{"issue":"9","key":"33_CR8","doi-asserted-by":"publisher","first-page":"4059","DOI":"10.1007\/s00894-013-1886-9","volume":"19","author":"B.K. Sriwastava","year":"2013","unstructured":"Sriwastava, B.K., Basu, S., Maulik, U., Plewczynski, D.: PPIcons: Identification of protein-protein interaction sites in selected organisms. J. Mol. Model.\u00a019(9), 4059\u20134070 (2013)","journal-title":"J. Mol. Model."},{"key":"33_CR9","doi-asserted-by":"crossref","unstructured":"Chen, C.T., Peng, H.P., Jian, J.W.: Protein-protein interaction site predictions with three-dimensional probability distributions of interacting atoms on protein surfaces. PLOS One\u00a07(6), e37706 (2012)","DOI":"10.1371\/journal.pone.0037706"},{"key":"33_CR10","unstructured":"Minhas, F.U., Geiss, B.J., Ben-hur, A.: PAIRpred: Partner-specific prediction of interacting residues from sequence and structure. Proteins: Structure, Function, and Bioinformatics (2013)"},{"key":"33_CR11","doi-asserted-by":"publisher","first-page":"402","DOI":"10.1186\/1471-2105-11-402","volume":"11","author":"P. Chen","year":"2010","unstructured":"Chen, P., Li, J.: Sequence-based identification of interface residues by an integrative profile combining hydrophobic and evolutionary information. BMC Bioinformatics\u00a011, 402\u2013416 (2010)","journal-title":"BMC Bioinformatics"},{"key":"33_CR12","doi-asserted-by":"crossref","unstructured":"Li, B.Q., Feng, K.Y., Chen, L., Huang, T., Cai, Y.D.: Prediction of Protein-Protein Interaction Sites by Random Forest Algorithm with mRMR and IFS. PLOS One\u00a07(8), e43927 (2012)","DOI":"10.1371\/journal.pone.0043927"},{"key":"33_CR13","doi-asserted-by":"publisher","first-page":"244","DOI":"10.1186\/1471-2105-12-244","volume":"12","author":"C.X. Li","year":"2011","unstructured":"Li, C.X., Drena, D., Vasant, H.: HomPPI: a class of sequence homology based protein-protein interface prediction methods. BMC Bioinformatics\u00a012, 244\u2013267 (2011)","journal-title":"BMC Bioinformatics"},{"key":"33_CR14","doi-asserted-by":"publisher","first-page":"41","DOI":"10.1186\/1471-2105-13-41","volume":"13","author":"R.A. Jordan","year":"2012","unstructured":"Jordan, R.A., EI-Manzalawy, Y., Dobbs, D., Honavar, V.: Predicting protein-protein interface residues using local surface structural similarity. BMC Bioinformatics\u00a013, 41\u201344 (2012)","journal-title":"BMC Bioinformatics"},{"key":"33_CR15","doi-asserted-by":"crossref","unstructured":"Xu, B., Wei, X., Deng, L., Guan, J., Zhou, S.: A semi-supervised boosting SVM for predicting hot spots at protein-protein interfaces. BMC Syst. Biol.\u00a06(suppl. 2) (2012)","DOI":"10.1186\/1752-0509-6-S2-S6"},{"issue":"9","key":"33_CR16","doi-asserted-by":"publisher","first-page":"4059","DOI":"10.1007\/s00894-013-1886-9","volume":"19","author":"B.K. Sriwastava","year":"2013","unstructured":"Sriwastava, B.K., Basu, S., Maulik, U., Plewczynski, D.: PPIcons: identification of protein-protein interaction sites in selected organisms. J. Mol. Model.\u00a019(9), 4059\u20134070 (2013)","journal-title":"J. Mol. Model."},{"key":"33_CR17","first-page":"1002","volume":"10","author":"H. Hwang","year":"2013","unstructured":"Hwang, H., Vreven, T., Weng, Z.: Binding interface prediction by combining protein-protein docking results. Proteins\u00a010, 1002 (2013)","journal-title":"Proteins"},{"issue":"4","key":"33_CR18","doi-asserted-by":"publisher","first-page":"917","DOI":"10.1006\/jmbi.2000.4092","volume":"302","author":"X. Gallet","year":"2000","unstructured":"Gallet, X., Charloteaux, B., Thomas, A., Brasseur, R.: A fast method to predict protein interaction sites from sequences. J. Mol. Biol.\u00a0302(4), 917\u2013926 (2000)","journal-title":"J. Mol. Biol."},{"issue":"1","key":"33_CR19","doi-asserted-by":"publisher","first-page":"56","DOI":"10.1002\/prot.340090107","volume":"9","author":"S. Chris","year":"1991","unstructured":"Chris, S., Reinhard, S.: Database of homology-derived protein structures and the structural meaning of sequence alignment. Proteins Struct. Funct. Bioinforma.\u00a09(1), 56\u201368 (1991)","journal-title":"Proteins Struct. Funct. Bioinforma."},{"issue":"1","key":"33_CR20","doi-asserted-by":"publisher","first-page":"5","DOI":"10.1023\/A:1010933404324","volume":"45","author":"L. Breiman","year":"2001","unstructured":"Breiman, L.: Random forests. Machine Learning\u00a045(1), 5\u201332 (2001)","journal-title":"Machine Learning"},{"key":"33_CR21","doi-asserted-by":"crossref","unstructured":"Hall, M., Frank, E., Holmes, G., Pfahringer, B., Reutemann, P., Witten, I.H.: The WEKA Data Mining Software: An Update. SIGKDD Explorations\u00a011(1) (2009)","DOI":"10.1145\/1656274.1656278"},{"issue":"27","key":"33_CR22","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1145\/1961189.1961199","volume":"2","author":"C.C. Chang","year":"2011","unstructured":"Chang, C.C., Lin, C.J.: LIBSVM: a library for support vector machines. ACM Transactions on Intelligent Systems and Technology\u00a02(27), 1\u201327 (2011)","journal-title":"ACM Transactions on Intelligent Systems and Technology"},{"issue":"3","key":"33_CR23","doi-asserted-by":"publisher","first-page":"630","DOI":"10.1002\/prot.21248","volume":"66","author":"A. Porollo","year":"2007","unstructured":"Porollo, A., Meller, J.: Prediction-based fingerprints of protein-protein interactions. Proteins Struct. Funct. Bioinforma\u00a066(3), 630\u2013645 (2007)","journal-title":"Proteins Struct. Funct. Bioinforma"},{"issue":"24","key":"33_CR24","doi-asserted-by":"publisher","first-page":"3397","DOI":"10.1093\/bioinformatics\/btm474","volume":"23","author":"S.S. Neqi","year":"2007","unstructured":"Neqi, S.S., Schein, C.H., Oezquen, N., Power, T.D., Braun, W.: InterProSurf: a web server for predicting interacting sites on protein surfaces. Bioinformatics\u00a023(24), 3397\u20133399 (2007)","journal-title":"Bioinformatics"}],"container-title":["Lecture Notes in Computer Science","Intelligent Computing in Bioinformatics"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-09330-7_33","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,27]],"date-time":"2019-05-27T06:58:26Z","timestamp":1558940306000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-319-09330-7_33"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014]]},"ISBN":["9783319093291","9783319093307"],"references-count":24,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-09330-7_33","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2014]]}}}