{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,8]],"date-time":"2024-09-08T12:39:44Z","timestamp":1725799184162},"publisher-location":"Cham","reference-count":34,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319102641"},{"type":"electronic","value":"9783319102658"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2014]]},"DOI":"10.1007\/978-3-319-10265-8_1","type":"book-chapter","created":{"date-parts":[[2014,8,19]],"date-time":"2014-08-19T07:26:17Z","timestamp":1408433177000},"page":"1-14","source":"Crossref","is-referenced-by-count":2,"title":["BINOS4DNA: Bitmap Indexes and NoSQL for Identifying Species with DNA Signatures through Metagenomics Samples"],"prefix":"10.1007","author":[{"given":"Ramin","family":"Karimi","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ladjel","family":"Bellatreche","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Patrick","family":"Girard","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ahcene","family":"Boukorca","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Andras","family":"Hajdu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"issue":"10","key":"1_CR1","first-page":"524","volume":"60","author":"J.M. Tiedje","year":"1994","unstructured":"Tiedje, J.M.: Microbial diversity: of value to whom. ASM News\u00a060(10), 524\u2013525 (1994)","journal-title":"ASM News"},{"key":"1_CR2","unstructured":"Allsopp, D., Colwell, R.R., Hawksworth, D.L., et al.: Microbial Diversity and Ecosystem Function: Proceedings of the IUBS\/IUMS Workshop held at Egham, UK, August 10-13. CAB INTERNATIONAL (1995)"},{"issue":"5570","key":"1_CR3","doi-asserted-by":"publisher","first-page":"1127","DOI":"10.1126\/science.1070633","volume":"296","author":"T. Kaeberlein","year":"2002","unstructured":"Kaeberlein, T., Lewis, K., Epstein, S.S.: Isolating \u201cuncultivable\u201d microorganisms in pure culture in a simulated natural environment. Science\u00a0296(5570), 1127\u20131129 (2002)","journal-title":"Science"},{"issue":"5","key":"1_CR4","doi-asserted-by":"publisher","first-page":"455","DOI":"10.1038\/nbt0509-455","volume":"27","author":"C. Trapnell","year":"2009","unstructured":"Trapnell, C., Salzberg, S.L.: How to map billions of short reads onto genomes. Nature Biotechnology\u00a027(5), 455 (2009)","journal-title":"Nature Biotechnology"},{"key":"1_CR5","doi-asserted-by":"crossref","unstructured":"Thomas, T., Gilbert, J., Meyer, F.: Metagenomics-a guide from sampling to data analysis. Microb. Inform. Exp.\u00a02(3) (2012)","DOI":"10.1186\/2042-5783-2-3"},{"issue":"4","key":"1_CR6","doi-asserted-by":"publisher","first-page":"449","DOI":"10.1093\/bioinformatics\/btq689","volume":"27","author":"B. Haubold","year":"2011","unstructured":"Haubold, B., Reed, F.A., Pfaffelhuber, P.: Alignment-free estimation of nucleotide diversity. Bioinformatics\u00a027(4), 449\u2013455 (2011)","journal-title":"Bioinformatics"},{"key":"1_CR7","doi-asserted-by":"crossref","unstructured":"Wooley, J.C., Godzik, A., Friedberg, I.: A primer on metagenomics. PLoS Computational Biology\u00a06(2), e1000667 (2010)","DOI":"10.1371\/journal.pcbi.1000667"},{"issue":"1","key":"1_CR8","doi-asserted-by":"crossref","first-page":"36","DOI":"10.1038\/nrg3117","volume":"13","author":"T.J. Treangen","year":"2012","unstructured":"Treangen, T.J., Salzberg, S.L.: Repetitive DNA and next-generation sequencing: computational challenges and solutions. Nature Reviews Genetics\u00a013(1), 36\u201346 (2012)","journal-title":"Nature Reviews Genetics"},{"issue":"16","key":"1_CR9","doi-asserted-by":"publisher","first-page":"2122","DOI":"10.1093\/bioinformatics\/btg295","volume":"19","author":"H.H. Otu","year":"2003","unstructured":"Otu, H.H., Sayood, K.: A new sequence distance measure for phylogenetic tree construction. Bioinformatics\u00a019(16), 2122\u20132130 (2003)","journal-title":"Bioinformatics"},{"key":"1_CR10","doi-asserted-by":"publisher","first-page":"162","DOI":"10.1016\/j.physa.2013.12.025","volume":"398","author":"C. Li","year":"2014","unstructured":"Li, C., Yang, Y., Jia, M., Zhang, Y., Yu, X., Wang, C.: Phylogenetic analysis of DNA sequences based on k-word and rough set theory. Physica A: Statistical Mechanics and its Applications\u00a0398, 162\u2013171 (2014)","journal-title":"Physica A: Statistical Mechanics and its Applications"},{"key":"1_CR11","doi-asserted-by":"crossref","unstructured":"Nagar, A., Hahsler, M.: Genomic sequence fragment identification using quasi-alignment. In: Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics, p. 359. ACM (2013)","DOI":"10.1145\/2506583.2506647"},{"issue":"4","key":"1_CR12","doi-asserted-by":"publisher","first-page":"513","DOI":"10.1093\/bioinformatics\/btg005","volume":"19","author":"S. Vinga","year":"2003","unstructured":"Vinga, S., Almeida, J.: Alignment-free sequence comparison\u2013a review. Bioinformatics\u00a019(4), 513\u2013523 (2003)","journal-title":"Bioinformatics"},{"key":"1_CR13","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"272","DOI":"10.1007\/978-3-642-29627-7_29","volume-title":"Research in Computational Molecular Biology","author":"K. Song","year":"2012","unstructured":"Song, K., Ren, J., Zhai, Z., Liu, X., Deng, M., Sun, F.: Alignment-free sequence comparison based on next generation sequencing reads: Extended abstract. In: Chor, B. (ed.) RECOMB 2012. LNCS, vol.\u00a07262, pp. 272\u2013285. Springer, Heidelberg (2012)"},{"issue":"8","key":"1_CR14","first-page":"1","volume":"14","author":"S.M. Srinivasan","year":"2013","unstructured":"Srinivasan, S.M., Guda, C.: MetaID: A novel method for identification and quantification of metagenomic samples. BMC Genomics\u00a014(8), 1\u201312 (2013)","journal-title":"BMC Genomics"},{"key":"1_CR15","doi-asserted-by":"crossref","unstructured":"Phillippy, A.M., Mason, J.A., Ayanbule, K., Sommer, D.D., Taviani, E., Huq, A., ... Salzberg, S.L.: Comprehensive DNA signature discovery and validation. PLoS Computational Biology\u00a03(5), e98 (2007)","DOI":"10.1371\/journal.pcbi.0030098"},{"key":"1_CR16","doi-asserted-by":"crossref","unstructured":"Phillippy, A.M., Ayanbule, K., Edwards, N.J., Salzberg, S.L.: Insignia: a DNA signature search web server for diagnostic assay development. Nucleic Acids Research\u00a037(suppl. 2), W229\u2013W234 (2009)","DOI":"10.1093\/nar\/gkp286"},{"issue":"1","key":"1_CR17","doi-asserted-by":"publisher","first-page":"340","DOI":"10.1186\/1471-2105-11-340","volume":"11","author":"R.V. Satya","year":"2010","unstructured":"Satya, R.V., Kumar, K., Zavaljevski, N., Reifman, J.: A high-throughput pipeline for the design of real-time pcr signatures. BMC Bioinformatics\u00a011(1), 340 (2010)","journal-title":"BMC Bioinformatics"},{"key":"1_CR18","unstructured":"Apache Hadoop available at http:\/\/hadoop.apache.org\/"},{"key":"1_CR19","unstructured":"White, T.: Hadoop: The definitive guide. O\u2019Reilly Media, Inc. (2012)"},{"key":"1_CR20","unstructured":"Cloudera Frequently Asked Questions (FAQs), http:\/\/www.cloudera.com\/content\/cloudera\/en\/why-cloudera\/hadoop-and-big-data.html"},{"key":"1_CR21","doi-asserted-by":"crossref","unstructured":"Shvachko, K., Kuang, H., Radia, S., Chansler, R.: The hadoop distributed file system. In: 2010 IEEE 26th Symposium on Mass Storage Systems and Technologies (MSST), pp. 1\u201310. IEEE (2010)","DOI":"10.1109\/MSST.2010.5496972"},{"key":"1_CR22","unstructured":"NoSQL Relational Database Management System homepage, http:\/\/www.strozzi.it\/cgi-bin\/CSA\/tw7\/I\/en_US\/NoSQL\/Home%20Page"},{"key":"1_CR23","doi-asserted-by":"crossref","unstructured":"Michael, M., Moreira, J.E., Shiloach, D., Wisniewski, R.W.: Scale-up x scale-out: A case study using nutch\/lucene. In: IEEE International Parallel and Distributed Processing Symposium, IPDPS 2007, pp. 1\u20138. IEEE (2007)","DOI":"10.1109\/IPDPS.2007.370631"},{"key":"1_CR24","doi-asserted-by":"crossref","unstructured":"Bondi, A.B.: Characteristics of scalability and their impact on performance. In: Proceedings of the 2nd International Workshop on Software and Performance, pp. 195\u2013203. ACM (2000)","DOI":"10.1145\/350391.350432"},{"key":"1_CR25","unstructured":"Apache Hive available at http:\/\/hive.apache.org"},{"key":"1_CR26","doi-asserted-by":"crossref","unstructured":"Thusoo, A., Sarma, J.S., Jain, N., Shao, Z., Chakka, P., Zhang, N., Antony, S., Liu, H., Murthy, R.: Hive-a petabyte scale data warehouse using hadoop. In: 2010 IEEE 26th International Conference on Data Engineering (ICDE), pp. 996\u20131005. IEEE (2010)","DOI":"10.1109\/ICDE.2010.5447738"},{"key":"1_CR27","unstructured":"Apache HBase available at http:\/\/hbase.apache.org"},{"key":"1_CR28","unstructured":"Karande, N.D.: Efficient indexing technique using bitmap indices for data warehouses. International Journal\u00a01(4) (2013)"},{"issue":"2","key":"1_CR29","doi-asserted-by":"crossref","first-page":"177","DOI":"10.5626\/JCSE.2007.1.2.177","volume":"1","author":"L. Bellatreche","year":"2007","unstructured":"Bellatreche, L., Missaoui, R., Necir, H., Drias, H.: A data mining approach for selecting bitmap join indices. JCSE\u00a01(2), 177\u2013194 (2007)","journal-title":"JCSE"},{"key":"1_CR30","unstructured":"National Center for Biotechnology Information (NCBI), ftp:\/\/ftp.ncbi.nlm.nih.gov\/genomes\/Bacteria\/"},{"key":"1_CR31","unstructured":"Insignia Homepage, http:\/\/insignia.cbcb.umd.edu\/index.php"},{"key":"1_CR32","unstructured":"Metasim Homepage, http:\/\/ab.inf.uni-tuebingen.de\/software\/metasim\/"},{"key":"1_CR33","doi-asserted-by":"crossref","unstructured":"Richter, D.C., Ott, F., Auch, A.F., Schmid, R., Huson, D.H.: Metasima sequencing simulator for genomics and metagenomics. PloS One\u00a03(10), e3373 (2008)","DOI":"10.1371\/journal.pone.0003373"},{"key":"1_CR34","unstructured":"Hbase and Hive integration, https:\/\/cwiki.apache.org\/confluence\/display\/Hive\/HBaseIntegration"}],"container-title":["Lecture Notes in Computer Science","Information Technology in Bio- and Medical Informatics"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-10265-8_1","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,4,15]],"date-time":"2022-04-15T00:43:48Z","timestamp":1649983428000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-319-10265-8_1"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014]]},"ISBN":["9783319102641","9783319102658"],"references-count":34,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-10265-8_1","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2014]]}}}