{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,26]],"date-time":"2025-03-26T11:07:04Z","timestamp":1742987224792,"version":"3.40.3"},"publisher-location":"Cham","reference-count":28,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319131528"},{"type":"electronic","value":"9783319131535"}],"license":[{"start":{"date-parts":[[2015,1,1]],"date-time":"2015-01-01T00:00:00Z","timestamp":1420070400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2015,1,1]],"date-time":"2015-01-01T00:00:00Z","timestamp":1420070400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2015]]},"DOI":"10.1007\/978-3-319-13153-5_14","type":"book-chapter","created":{"date-parts":[[2014,11,14]],"date-time":"2014-11-14T15:24:30Z","timestamp":1415978670000},"page":"139-148","source":"Crossref","is-referenced-by-count":1,"title":["Cross-Platform Pathway Activity Transformation and Classification of Microarray Data"],"prefix":"10.1007","author":[{"given":"Worrawat","family":"Engchuan","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Asawin","family":"Meechai","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sissades","family":"Tongsima","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jonathan H.","family":"Chan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"issue":"6","key":"14_CR1","doi-asserted-by":"publisher","first-page":"819","DOI":"10.1089\/10665270050514954","volume":"7","author":"M.K. Kerr","year":"2000","unstructured":"Kerr, M.K., Martin, M., Churchill, G.A.: Analysis of variance for gene expression microarray data. Journal of Computational Biology\u00a07(6), 819\u2013837 (2000)","journal-title":"Journal of Computational Biology"},{"issue":"6","key":"14_CR2","doi-asserted-by":"publisher","first-page":"418","DOI":"10.1038\/35076576","volume":"2","author":"J. Quackenbush","year":"2001","unstructured":"Quackenbush, J.: Computational analysis of microarray data. Nature Reviews Genetics\u00a02(6), 418\u2013427 (2001)","journal-title":"Nature Reviews Genetics"},{"issue":"25","key":"14_CR3","doi-asserted-by":"publisher","first-page":"9309","DOI":"10.1073\/pnas.0401994101","volume":"101","author":"D.R. Rhodes","year":"2004","unstructured":"Rhodes, D.R., Yu, J., Shanker, K., Deshpande, N., Varambally, R., Ghosh, D., Barrette, T., Pandey, A., Chinnaiyan, A.M.: Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression. Proceedings of the National Academy of Sciences of the United States of America\u00a0101(25), 9309\u20139314 (2004)","journal-title":"Proceedings of the National Academy of Sciences of the United States of America"},{"issue":"11","key":"14_CR4","doi-asserted-by":"publisher","first-page":"1000217","DOI":"10.1371\/journal.pcbi.1000217","volume":"4","author":"E. Lee","year":"2008","unstructured":"Lee, E., Chuang, H.Y., Kim, J.W., Ideker, T., Lee, D.: Inferring pathway activity toward precise disease classification. PLoS Computational Biology\u00a04(11), e1000217 (2008)","journal-title":"PLoS Computational Biology"},{"issue":"4","key":"14_CR5","doi-asserted-by":"publisher","first-page":"649","DOI":"10.1007\/s00521-011-0662-y","volume":"21","author":"P. Sootanan","year":"2012","unstructured":"Sootanan, P., Prom-on, S., Meechai, A., Chan, J.H.: Pathway-based microarray analysis for robust disease classification. Neural Computing and Applications\u00a021(4), 649\u2013660 (2012)","journal-title":"Neural Computing and Applications"},{"key":"14_CR6","doi-asserted-by":"crossref","unstructured":"Engchuan, W., Chan, J.H.: Pathway activity transformation for multi-class classification of lung cancer datasets. Neurocomputing (in press, 2014)","DOI":"10.1016\/j.neucom.2014.08.096"},{"key":"14_CR7","doi-asserted-by":"crossref","unstructured":"Choi, J.K., Yu, U., Kim, S., Yoo, O.J.: Combining multiple microarray studies and modeling inter study variation. Bioinformatics\u00a019, i84\u2013i90 (2003)","DOI":"10.1093\/bioinformatics\/btg1010"},{"issue":"20","key":"14_CR8","doi-asserted-by":"publisher","first-page":"3905","DOI":"10.1093\/bioinformatics\/bti647","volume":"21","author":"L. Xu","year":"2005","unstructured":"Xu, L., Tan, A.C., Naiman, D.Q., Geman, D., Winslow, R.L.: Robust prostate cancer marker genes emerge from direct integration of inter-study microarray data. Bioinformatics\u00a021(20), 3905\u20133911 (2005)","journal-title":"Bioinformatics"},{"issue":"1","key":"14_CR9","doi-asserted-by":"publisher","first-page":"105","DOI":"10.1093\/bioinformatics\/btg385","volume":"20","author":"M. Benito","year":"2004","unstructured":"Benito, M., Parker, J., Du, Q., Wu, J., Xiang, D., Perou, C.M., Marron, J.S.: Adjustment of systematic microarray data biases. Bioinformatics\u00a020(1), 105\u2013114 (2004)","journal-title":"Bioinformatics"},{"issue":"2","key":"14_CR10","doi-asserted-by":"publisher","first-page":"17238","DOI":"10.1371\/journal.pone.0017238","volume":"6","author":"C. Chen","year":"2011","unstructured":"Chen, C., Grennan, K., Badner, J., Zhang, D., Gershon, E., Jin, L., Liu, C.: Removing batch effects in analysis of expression microarray data: an evaluation of six batch adjustment methods. PloS One\u00a06(2), e17238 (2011)","journal-title":"PloS One"},{"issue":"19","key":"14_CR11","doi-asserted-by":"publisher","first-page":"5676","DOI":"10.1093\/nar\/gkg763","volume":"31","author":"P.K. Tan","year":"2003","unstructured":"Tan, P.K., Downey, T.J., Spitznagel Jr., E.L., Xu, P., Fu, D., Dimitrov, D.S., Cam, M.C.: Evaluation of gene expression measurements from commercial microarray platforms. Nucleic Acids Research\u00a031(19), 5676\u20135684 (2003)","journal-title":"Nucleic Acids Research"},{"issue":"5","key":"14_CR12","doi-asserted-by":"publisher","first-page":"345","DOI":"10.1038\/nmeth756","volume":"2","author":"R.A. Irizarry","year":"2005","unstructured":"Irizarry, R.A., Warren, D., Spencer, F., Kim, I.F., Biswal, S., Frank, B.C., Yu, W.: Multiple-laboratory comparison of microarray platforms. Nature Methods\u00a02(5), 345\u2013350 (2005)","journal-title":"Nature Methods"},{"key":"14_CR13","doi-asserted-by":"crossref","unstructured":"Howell, D.C.: The treatment of missing data. In: The Sage Handbook of Social Science Methodology, pp. 208\u2013224 (2007)","DOI":"10.4135\/9781848607958.n11"},{"issue":"10","key":"14_CR14","doi-asserted-by":"publisher","first-page":"1087","DOI":"10.1016\/j.jclinepi.2006.01.014","volume":"59","author":"A.R.T. Donders","year":"2006","unstructured":"Donders, A.R.T., van der Heijden, G.J., Stijnen, T., Moons, K.G.: Review: a gentle introduction to imputation of missing values. Journal of Clinical Epidemiology\u00a059(10), 1087\u20131091 (2006)","journal-title":"Journal of Clinical Epidemiology"},{"issue":"6","key":"14_CR15","doi-asserted-by":"publisher","first-page":"520","DOI":"10.1093\/bioinformatics\/17.6.520","volume":"17","author":"O. Troyanskaya","year":"2001","unstructured":"Troyanskaya, O., Cantor, M., Sherlock, G., Brown, P., Hastie, T., Tibshirani, R., Bostein, D., Altman, R.B.: Missing value estimation methods for DNA microarrays. Bioinformatics\u00a017(6), 520\u2013525 (2001)","journal-title":"Bioinformatics"},{"issue":"16","key":"14_CR16","doi-asserted-by":"publisher","first-page":"2088","DOI":"10.1093\/bioinformatics\/btg287","volume":"19","author":"S. Oba","year":"2003","unstructured":"Oba, S., Sato, M.A., Takemasa, I., Monden, M., Matsubara, K.I., Ishii, S.: A Bayesian missing value estimation method for gene expression profile data. Bioinformatics\u00a019(16), 2088\u20132096 (2003)","journal-title":"Bioinformatics"},{"issue":"1","key":"14_CR17","doi-asserted-by":"publisher","first-page":"12","DOI":"10.1186\/1471-2105-9-12","volume":"9","author":"G.N. Brock","year":"2008","unstructured":"Brock, G.N., Shaffer, J.R., Blakesley, R.E., Lotz, M.J., Tseng, G.C.: Which missing value imputation method to use in expression profiles: a comparative study and two selection schemes. BMC Bioinformatics\u00a09(1), 12 (2008)","journal-title":"BMC Bioinformatics"},{"issue":"7","key":"14_CR18","doi-asserted-by":"publisher","first-page":"1371","DOI":"10.1002\/pmic.200700975","volume":"8","author":"R. Pedreschi","year":"2008","unstructured":"Pedreschi, R., Hertog, M.L., Carpentier, S.C., Lammertyn, J., Robben, J., Noben, J.P., Panis, B., Swennen, R., Nicola\u00ef, B.M.: Treatment of missing values for multivariate statistical analysis of gel based proteomics data. Proteomics\u00a08(7), 1371\u20131383 (2008)","journal-title":"Proteomics"},{"issue":"5","key":"14_CR19","doi-asserted-by":"publisher","first-page":"498","DOI":"10.1093\/bib\/bbq080","volume":"12","author":"A.W.C. Liew","year":"2011","unstructured":"Liew, A.W.C., Law, N.F., Yan, H.: Missing value imputation for gene expression data: computational techniques to recover missing data from available information. Briefings in Bioinformatics\u00a012(5), 498\u2013513 (2011)","journal-title":"Briefings in Bioinformatics"},{"issue":"1","key":"14_CR20","doi-asserted-by":"publisher","first-page":"207","DOI":"10.1093\/nar\/30.1.207","volume":"30","author":"R. Edgar","year":"2002","unstructured":"Edgar, R., Domrachev, M., Lash, A.E.: Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Research\u00a030(1), 207\u2013210 (2002)","journal-title":"Nucleic Acids Research"},{"issue":"12","key":"14_CR21","doi-asserted-by":"publisher","first-page":"1739","DOI":"10.1093\/bioinformatics\/btr260","volume":"27","author":"A. Liberzon","year":"2011","unstructured":"Liberzon, A., Subramanian, A., Pinchback, R., Thorvaldsd\u00f3ttir, H., Tamayo, P., Mesirov, J.P.: Molecular signatures database (MSigDB) 3.0. Bioinformatics\u00a027(12), 1739\u20131740 (2011)","journal-title":"Bioinformatics"},{"issue":"9","key":"14_CR22","doi-asserted-by":"publisher","first-page":"1164","DOI":"10.1093\/bioinformatics\/btm069","volume":"23","author":"W. Stacklies","year":"2007","unstructured":"Stacklies, W., Redestig, H., Scholz, M., Walther, D., Selbig, J.: pcaMethods\u2014a biocon-ductor package providing PCA methods for incomplete data. Bioinformatics\u00a023(9), 1164\u20131167 (2007)","journal-title":"Bioinformatics"},{"key":"14_CR23","first-page":"1157","volume":"3","author":"I. Guyon","year":"2003","unstructured":"Guyon, I., Elisseeff, A.: An introduction to variable and feature selection. The Journal of Machine Learning Research\u00a03, 1157\u20131182 (2003)","journal-title":"The Journal of Machine Learning Research"},{"key":"14_CR24","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"crossref","first-page":"171","DOI":"10.1007\/3-540-57868-4_57","volume-title":"Machine Learning: ECML-94","author":"I. Kononenko","year":"1994","unstructured":"Kononenko, I.: Estimating attributes: analysis and extensions of RELIEF. In: Bergadano, F., De Raedt, L. (eds.) ECML 1994. LNCS, vol.\u00a0784, pp. 171\u2013182. Springer, Heidelberg (1994)"},{"issue":"1-2","key":"14_CR25","doi-asserted-by":"publisher","first-page":"23","DOI":"10.1023\/A:1025667309714","volume":"53","author":"M. Robnik-\u0160ikonja","year":"2003","unstructured":"Robnik-\u0160ikonja, M., Kononenko, I.: Theoretical and empirical analysis of Relief-F and RRelief-F. Machine Learning\u00a053(1-2), 23\u201369 (2003)","journal-title":"Machine Learning"},{"key":"14_CR26","unstructured":"Wang, Y., Makedon, F.: Application of Relief-F feature filtering algorithm to selecting informative genes for cancer classification using microarray data. In: Proceedings of the 2004 IEEE Computational Systems Bioinformatics Conference, CSB 2004, pp. 497\u2013498 (2004)"},{"issue":"1","key":"14_CR27","doi-asserted-by":"publisher","first-page":"10","DOI":"10.1145\/1656274.1656278","volume":"11","author":"M. Hall","year":"2009","unstructured":"Hall, M., Frank, E., Holmes, G., Pfahringer, B., Reutemann, P., Witten, I.H.: The WEKA data mining software: an update. ACM SIGKDD Explorations Newsletter\u00a011(1), 10\u201318 (2009)","journal-title":"ACM SIGKDD Explorations Newsletter"},{"key":"14_CR28","doi-asserted-by":"crossref","unstructured":"Pletscher-Frankild, S., Pallej\u00e0, A., Tsafou, K., Binder, J.X., Jensen, L.J.: DISEASES: Text mining and data integration of disease\u2013gene associations, bioRxiv, 008425 (2014)","DOI":"10.1101\/008425"}],"container-title":["Advances in Intelligent Systems and Computing","Computational Intelligence in Information Systems"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-13153-5_14","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,2,15]],"date-time":"2023-02-15T01:15:28Z","timestamp":1676423728000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-3-319-13153-5_14"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015]]},"ISBN":["9783319131528","9783319131535"],"references-count":28,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-13153-5_14","relation":{},"ISSN":["2194-5357","2194-5365"],"issn-type":[{"type":"print","value":"2194-5357"},{"type":"electronic","value":"2194-5365"}],"subject":[],"published":{"date-parts":[[2015]]}}}