{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,8]],"date-time":"2024-09-08T16:36:23Z","timestamp":1725813383378},"publisher-location":"Cham","reference-count":14,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319131856"},{"type":"electronic","value":"9783319131863"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2014]]},"DOI":"10.1007\/978-3-319-13186-3_2","type":"book-chapter","created":{"date-parts":[[2014,12,1]],"date-time":"2014-12-01T15:09:58Z","timestamp":1417446598000},"page":"15-21","source":"Crossref","is-referenced-by-count":1,"title":["An Empirical Algorithm for Bias Correction Based on GC Estimation for Single Cell Sequencing"],"prefix":"10.1007","author":[{"given":"Bo","family":"Xu","sequence":"first","affiliation":[]},{"given":"Tengpeng","family":"Li","sequence":"additional","affiliation":[]},{"given":"Yi","family":"Luo","sequence":"additional","affiliation":[]},{"given":"Ruotao","family":"Xu","sequence":"additional","affiliation":[]},{"given":"Hongmin","family":"Cai","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2014,11,26]]},"reference":[{"issue":"7341","key":"2_CR1","doi-asserted-by":"publisher","first-page":"90","DOI":"10.1038\/nature09807","volume":"472","author":"N Navin","year":"2011","unstructured":"Navin, N., Kendall, J., Troge, J., Andrews, P., Rodgers, L., McIndoo, J., Cook, K., Stepansky, A., Levy, D., Esposito, D.: Tumour evolution inferred by single-cell sequencing. Nature 472(7341), 90\u201394 (2011)","journal-title":"Nature"},{"issue":"16","key":"2_CR2","doi-asserted-by":"publisher","first-page":"2078","DOI":"10.1093\/bioinformatics\/btp352","volume":"25","author":"H Li","year":"2009","unstructured":"Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R.: The sequence alignment\/map format and SAMtools. Bioinformatics 25(16), 2078\u20132079 (2009)","journal-title":"Bioinformatics"},{"issue":"10","key":"2_CR3","doi-asserted-by":"publisher","first-page":"e72","DOI":"10.1093\/nar\/gks001","volume":"40","author":"Y Benjamini","year":"2012","unstructured":"Benjamini, Y., Speed, T.P.: Summarizing and correcting the GC content bias in high-throughput sequencing. Nucleic Acids Res. 40(10), e72 (2012)","journal-title":"Nucleic Acids Res."},{"issue":"16","key":"2_CR4","doi-asserted-by":"publisher","first-page":"e105","DOI":"10.1093\/nar\/gkn425","volume":"36","author":"JC Dohm","year":"2008","unstructured":"Dohm, J.C., Lottaz, C., Borodina, T., Himmelbauer, H.: Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res. 36(16), e105 (2008)","journal-title":"Nucleic Acids Res."},{"key":"2_CR5","doi-asserted-by":"crossref","unstructured":"Voet, T., Kumar, P., Van Loo, P., Cooke, S.L., Marshall, J., Lin, M., Esteki, M.Z., Van der Aa, N., Mateiu, L., McBride, D.J.: Single-cell paired-end genome sequencing reveals structural variation per cell cycle. Nucleic Acids Res (2013)","DOI":"10.1093\/nar\/gkt345"},{"issue":"5","key":"2_CR6","doi-asserted-by":"publisher","first-page":"873","DOI":"10.1016\/j.cell.2012.02.028","volume":"148","author":"Y Hou","year":"2012","unstructured":"Hou, Y., Song, L., Zhu, P., Zhang, B., Tao, Y., Xu, X., Li, F., Wu, K., Liang, J., Shao, D.: Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm. Cell 148(5), 873\u2013885 (2012)","journal-title":"Cell"},{"issue":"3","key":"2_CR7","doi-asserted-by":"publisher","first-page":"525","DOI":"10.1016\/j.cell.2012.03.028","volume":"149","author":"ME Talkowski","year":"2012","unstructured":"Talkowski, M.E., Rosenfeld, J.A., Blumenthal, I., Pillalamarri, V., Chiang, C., Heilbut, A., Ernst, C., Hanscom, C., Rossin, E., Lindgren, A.M.: Sequencing chromosomal abnormalities reveals neurodevelopmental loci that confer risk across diagnostic boundaries. Cell 149(3), 525\u2013537 (2012)","journal-title":"Cell"},{"issue":"6","key":"2_CR8","doi-asserted-by":"publisher","first-page":"1095","DOI":"10.1101\/gr.180501","volume":"11","author":"FB Dean","year":"2001","unstructured":"Dean, F.B., Nelson, J.R., Giesler, T.L., Lasken, R.S.: Rapid amplification of plasmid and phage DNA using phi29 DNA polymerase and multiply-primed rolling circle amplification. Genome Res. 11(6), 1095\u20131099 (2001)","journal-title":"Genome Res."},{"key":"2_CR9","doi-asserted-by":"crossref","unstructured":"Tagliavi, Z., Draghici, S.: MDAsim: A multiple displacement amplification simulator. In: 2012 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), pp. 1\u20134. IEEE (2012)","DOI":"10.1109\/BIBM.2012.6392622"},{"issue":"9","key":"2_CR10","doi-asserted-by":"publisher","first-page":"e71","DOI":"10.1093\/nar\/gnh069","volume":"32","author":"JG Paez","year":"2004","unstructured":"Paez, J.G., Lin, M., Beroukhim, R., Lee, J.C., Zhao, X., Richter, D.J., Gabriel, S., Herman, P., Sasaki, H., Altshuler, D.: Genome coverage and sequence fidelity of \u03a629 polymerasee-based multiple strand displacement whole genome amplification. Nucleic Acids Res. 32(9), e71 (2004)","journal-title":"Nucleic Acids Res."},{"issue":"14","key":"2_CR11","doi-asserted-by":"publisher","first-page":"1754","DOI":"10.1093\/bioinformatics\/btp324","volume":"25","author":"H Li","year":"2009","unstructured":"Li, H., Durbin, R.: Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25(14), 1754\u20131760 (2009)","journal-title":"Bioinformatics"},{"issue":"1","key":"2_CR12","doi-asserted-by":"publisher","first-page":"75","DOI":"10.1038\/labinvest.3700495","volume":"87","author":"E Arriola","year":"2007","unstructured":"Arriola, E., Lambros, M.B., Jones, C., Dexter, T., Mackay, A., Tan, D.S., Tamber, N., Fenwick, K., Ashworth, A., Dowsett, M.: Evaluation of Phi29-based whole-genome amplification for microarray-based comparative genomic hybridisation. Lab. Invest. 87(1), 75\u201383 (2007)","journal-title":"Lab. Invest."},{"issue":"2","key":"2_CR13","doi-asserted-by":"publisher","first-page":"171","DOI":"10.1016\/S1525-1578(10)60543-0","volume":"7","author":"M Bredel","year":"2005","unstructured":"Bredel, M., Bredel, C., Juric, D., Kim, Y., Vogel, H., Harsh, G.R., Recht, L.D., Pollack, J.R., Sikic, B.I.: Amplification of whole tumor genomes and gene-by-gene mapping of genomic aberrations from limited sources of fresh-frozen and paraffin-embedded DNA. J. Mol. Diagn. 7(2), 171\u2013182 (2005)","journal-title":"J. Mol. Diagn."},{"issue":"1","key":"2_CR14","doi-asserted-by":"publisher","first-page":"e54236","DOI":"10.1371\/journal.pone.0054236","volume":"8","author":"C Zhang","year":"2013","unstructured":"Zhang, C., Zhang, C., Chen, S., Yin, X., Pan, X., Lin, G., Tan, Y., Tan, K., Xu, Z., Hu, P.: A single cell level based method for copy number variation analysis by low coverage massively parallel sequencing. PLoS ONE 8(1), e54236 (2013)","journal-title":"PLoS ONE"}],"container-title":["Lecture Notes in Computer Science","Trends and Applications in Knowledge Discovery and Data Mining"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-13186-3_2","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,28]],"date-time":"2019-05-28T17:40:13Z","timestamp":1559065213000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-319-13186-3_2"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014]]},"ISBN":["9783319131856","9783319131863"],"references-count":14,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-13186-3_2","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2014]]}}}