{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,8]],"date-time":"2024-09-08T18:13:22Z","timestamp":1725819202370},"publisher-location":"Cham","reference-count":30,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319164793"},{"type":"electronic","value":"9783319164809"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2015]]},"DOI":"10.1007\/978-3-319-16480-9_38","type":"book-chapter","created":{"date-parts":[[2015,3,16]],"date-time":"2015-03-16T15:09:53Z","timestamp":1426518593000},"page":"386-394","source":"Crossref","is-referenced-by-count":1,"title":["Systematic Comparison of Machine Learning Methods for Identification of miRNA Species as Disease Biomarkers"],"prefix":"10.1007","author":[{"given":"Chihiro","family":"Higuchi","sequence":"first","affiliation":[]},{"given":"Toshihiro","family":"Tanaka","sequence":"additional","affiliation":[]},{"given":"Yukinori","family":"Okada","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"key":"38_CR1","doi-asserted-by":"publisher","first-page":"797","DOI":"10.1126\/science.1066315","volume":"294","author":"G. Ruvkun","year":"2001","unstructured":"Ruvkun, G.: Molecular biology, Glimpses of a tiny RNA world. Science\u00a0294, 797\u2013799 (2001)","journal-title":"Science"},{"key":"38_CR2","doi-asserted-by":"publisher","first-page":"277","DOI":"10.1261\/rna.2183803","volume":"9","author":"V. Ambros","year":"2003","unstructured":"Ambros, V., Bartel, B., Bartel, D.P., Burge, C.B., Carrington, J.C., et al.: A uniform system for microRNA annotation. RNA\u00a09, 277\u2013279 (2003)","journal-title":"RNA"},{"key":"38_CR3","doi-asserted-by":"publisher","first-page":"215","DOI":"10.1016\/j.cell.2012.04.005","volume":"149","author":"M.S. Ebert","year":"2012","unstructured":"Ebert, M.S., Sharp, P.: Roles for microRNAs in conferring robustness to biological processes. Cell\u00a0149, 215\u2013424 (2012)","journal-title":"Cell"},{"doi-asserted-by":"crossref","unstructured":"Kozomara, A., Griffiths-Jones, S.: miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Res.\u00a042, D68\u2013D73 (2014)","key":"38_CR4","DOI":"10.1093\/nar\/gkt1181"},{"key":"38_CR5","doi-asserted-by":"publisher","first-page":"86","DOI":"10.1038\/nature09284","volume":"467","author":"P.P. Medina","year":"2010","unstructured":"Medina, P.P., Nolde, M., Slack, F.: OncomiR addiction in an in vivo model of microRNA-21-induced pre-B-cell lymphoma. Nature\u00a0467, 86\u201390 (2010)","journal-title":"Nature"},{"key":"38_CR6","doi-asserted-by":"publisher","first-page":"607","DOI":"10.1016\/j.immuni.2010.09.009","volume":"33","author":"R.M. O\u2019Connell","year":"2010","unstructured":"O\u2019Connell, R.M., Kahn, D., Gibson, W.S., Round, J.L., Scholz, R.L., et al.: MicroRNA-155 promotes autoimmune inflammation by enhancing inflammatory T cell development. Immunity\u00a033, 607\u2013619 (2010)","journal-title":"Immunity"},{"key":"38_CR7","doi-asserted-by":"publisher","first-page":"6615","DOI":"10.1128\/JVI.00417-10","volume":"84","author":"R.K. Jangra","year":"2010","unstructured":"Jangra, R.K., Yi, M., Lemon, S.: Regulation of hepatitis C virus translation and infectious virus production by the microRNA miR-122. J. Virol.\u00a084, 6615\u20136625 (2010)","journal-title":"J. Virol."},{"key":"38_CR8","doi-asserted-by":"publisher","first-page":"2152","DOI":"10.1158\/1535-7163.MCT-08-0021","volume":"7","author":"O. Kovalchuk","year":"2008","unstructured":"Kovalchuk, O., Filkowski, J., Meservy, J., Ilnytskyy, Y., Tryndyak, V.P., et al.: Involvement of microRNA-451 in resistance of the MCF-7 breast cancer cells to chemotherapeutic drug doxorubicin. Mol. Cancer Ther.\u00a07, 2152\u20132159 (2008)","journal-title":"Mol. Cancer Ther."},{"key":"38_CR9","doi-asserted-by":"publisher","first-page":"2263","DOI":"10.7314\/APJCP.2012.13.5.2263","volume":"13","author":"J.-X. Guo","year":"2012","unstructured":"Guo, J.-X., Tao, Q.-S., Lou, P.-R., Chen, X., Chen, J., et al.: miR-181b as a potential molecular target for anticancer therapy of gastric neoplasms. Asian Pac. J. Cancer Prev.\u00a013, 2263\u20132267 (2012)","journal-title":"Asian Pac. J. Cancer Prev."},{"issue":"3","key":"38_CR10","doi-asserted-by":"publisher","first-page":"329","DOI":"10.1093\/biostatistics\/kxh010","volume":"5","author":"T. Hastie","year":"2004","unstructured":"Hastie, T., Tibshirani, R.: Efficient quadratic regularization for expression arrays. Biostatistics\u00a05(3), 329\u2013340 (2004)","journal-title":"Biostatistics"},{"key":"38_CR11","doi-asserted-by":"publisher","first-page":"560","DOI":"10.1056\/NEJMoa052933","volume":"355","author":"C. Fan","year":"2006","unstructured":"Fan, C., Oh, D.S., Wessels, L., Weigelt, B., Nuyten, D.S., et al.: Concordance among gene-expression-based predictors for breast cancer. N. Engl. J. Med.\u00a0355, 560\u2013569 (2006)","journal-title":"N. Engl. J. Med."},{"key":"38_CR12","doi-asserted-by":"crossref","first-page":"267","DOI":"10.1111\/j.2517-6161.1996.tb02080.x","volume":"58","author":"R. Tibshirani","year":"1996","unstructured":"Tibshirani, R.: Regression shrinkage and selection via the lasso. J. Royal. Statist. Soc B\u00a058, 267\u2013268 (1996)","journal-title":"J. Royal. Statist. Soc B"},{"key":"38_CR13","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1214\/aos\/1176347963","volume":"19","author":"J.. Friedman","year":"1991","unstructured":"Friedman, J.: Multivariate adaptive regression splines. The Annals of Statistics\u00a019, 1\u201367 (1991)","journal-title":"The Annals of Statistics"},{"key":"38_CR14","doi-asserted-by":"publisher","first-page":"106","DOI":"10.1016\/j.jmoldx.2013.10.001","volume":"16","author":"R. S\u00f8kilde","year":"2014","unstructured":"S\u00f8kilde, R., Vincent, M., M\u00f8ller, A.K., Hansen, A., H\u00f8iby, P.E., et al.: Efficient identification of miRNAs for classification of tumor origin. J. Mol. Diagn.\u00a016, 106\u2013115 (2014)","journal-title":"J. Mol. Diagn."},{"doi-asserted-by":"crossref","unstructured":"Zhang, H., Yang, S., Guo, L., Zhao, Y., Shao, F., et al.: Comparisons of isomiR patterns and classification performance using the rank-based MANOVA and 10-fold cross-validation. Gene (2014)","key":"38_CR15","DOI":"10.1016\/j.gene.2014.11.026"},{"key":"38_CR16","doi-asserted-by":"publisher","first-page":"581","DOI":"10.1186\/1756-0500-7-581","volume":"7","author":"Y.-H. Taguchi","year":"2014","unstructured":"Taguchi, Y.-H., Murakami, Y.: Universal disease biomarker: can a fixed set of blood microRNAs diagnose multiple diseases? BMC Res. Notes\u00a07, 581 (2014)","journal-title":"BMC Res. Notes"},{"unstructured":"R.A.: language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, http:\/\/www.R-project.org\/","key":"38_CR17"},{"doi-asserted-by":"crossref","unstructured":"Friedman, J.H., Hastie, T., Tibshirani, R.: Regularization Paths for Generalized Linear Models via Coordinate Descent. Journal of Statistical Software 33\u00a0(1), 1\u201322, http:\/\/www.jstatsoft.org\/v33\/i01\/","key":"38_CR18","DOI":"10.18637\/jss.v033.i01"},{"unstructured":"Milborrow, S., Derived from mda:mars by Hastie, R., Tibshirani, R.: Uses Alan Miller\u2019s Fortran utilities with Thomas Lumley\u2019s leaps wrapper. earth: Multivariate Adaptive Regression Spline Models. R package version 3.2-7 (2014), http:\/\/CRAN.R-project.org\/package=earth","key":"38_CR19"},{"unstructured":"Kuhn, M.: Contributions from Wing, J., Weston, S., Williams, A., Keefer, A., Engelhardt. A., et al.: caret: Classification and Regression Training. R package version 6.0-37 http:\/\/CRAN.R-project.org\/package=caret.2014","key":"38_CR20"},{"unstructured":"Geisser, S.: Predictive Inference (1993) ISBN 0-412-03471-9","key":"38_CR21"},{"doi-asserted-by":"crossref","unstructured":"Wang, C., Yang, S., Sun, G., Tang, X., Lu, S., et al.: Comparative miRNA expression profiles in individuals with latent and active tuberculosis. PLoS One\u00a06, e25832 (2011)","key":"38_CR22","DOI":"10.1371\/journal.pone.0025832"},{"doi-asserted-by":"crossref","unstructured":"Murakami, Y., Toyoda, H., Tanahashi, T., Tanaka, J., Kumada, T., et al.: Comprehensive miRNA expression analysis in peripheral blood can diagnose liver disease. PLoS One\u00a07, e48366 (2012)","key":"38_CR23","DOI":"10.1371\/journal.pone.0048366"},{"doi-asserted-by":"crossref","unstructured":"Maertzdorf, J., Weiner III, J., Mollenkopf, H.J., TBornotTB Network and Bauer, T., et al.: Common patterns and disease-related signatures in tuberculosis and sarcoidosis. Proc. Natl. Acad. Sci.\u00a0109, 7853\u20137858 (2012)","key":"38_CR24","DOI":"10.1073\/pnas.1121072109"},{"doi-asserted-by":"crossref","unstructured":"Vuppalanchi, R., Liang, T., Goswami, C.P., Nalamasu, R., Li, L., et al.: Relationship between differential hepatic microRNA expression and decreased hepatic cytochrome P450 3A activity in cirrhosis. PLoS One\u00a08, e74471 (2013)","key":"38_CR25","DOI":"10.1371\/journal.pone.0074471"},{"key":"38_CR26","doi-asserted-by":"publisher","first-page":"115","DOI":"10.1038\/gene.2013.69","volume":"15","author":"K. Smigielska-Czepiel","year":"2014","unstructured":"Smigielska-Czepiel, K., van den Berg, A., Jellema, P., van der Lei, R.J., Bijzet, J., et al.: Comprehensive analysis of miRNA expression in T-cell subsets of rheumatoid arthritis patients reveals defined signatures of naive and memory Tregs. Genes Immun.\u00a015, 115\u2013125 (2014)","journal-title":"Genes Immun."},{"key":"38_CR27","doi-asserted-by":"publisher","first-page":"850","DOI":"10.1016\/j.jhep.2014.05.035","volume":"61","author":"J.L. Plieskatt","year":"2014","unstructured":"Plieskatt, J.L., Rinaldi, G., Feng, Y., Peng, J., Yonglitthipagon, P., et al.: Distinct miRNA signatures associate with subtypes of cholangiocarcinoma from infection with the tumourigenic liver fluke Opisthorchis viverrini. J. Hepatol.\u00a061, 850\u2013858 (2014)","journal-title":"J. Hepatol."},{"key":"38_CR28","doi-asserted-by":"publisher","first-page":"1577","DOI":"10.1126\/science.1113329","volume":"309","author":"C.L. Jopling","year":"2005","unstructured":"Jopling, C.L., Yi, M., Lancaster, A.M., Lemon, S.M., Sarnow, P.: Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA. Science\u00a0309, 1577\u20131581 (2005)","journal-title":"Science"},{"key":"38_CR29","doi-asserted-by":"publisher","first-page":"1284","DOI":"10.1002\/art.23429","volume":"58","author":"T. Nakasa","year":"2008","unstructured":"Nakasa, T., Miyaki, T., Okubo, S., Hashimoto, A., Nishida, M., et al.: Expression of micro RNA-146 in rheumatoid arthritis synovial tissue. Arthritis Rheum.\u00a058, 1284\u20131292 (2008)","journal-title":"Arthritis Rheum."},{"issue":"3","key":"38_CR30","doi-asserted-by":"publisher","first-page":"487","DOI":"10.1111\/j.1365-2036.2010.04366.x","volume":"32","author":"M. Estep","year":"2010","unstructured":"Estep, M., Armistead, D., Hossain, N., Elarainy, H., Goodman, Z., et al.: Differential expression of miRNAs in the visceral adipose tissue of patients with non-alcoholic fatty liver disease. Aliment. Pharmacol. Ther.\u00a032(3), 487\u2013497 (2010)","journal-title":"Aliment. Pharmacol. Ther."}],"container-title":["Lecture Notes in Computer Science","Bioinformatics and Biomedical Engineering"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-16480-9_38","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,6,7]],"date-time":"2024-06-07T21:42:11Z","timestamp":1717796531000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-319-16480-9_38"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015]]},"ISBN":["9783319164793","9783319164809"],"references-count":30,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-16480-9_38","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2015]]}}}