{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,27]],"date-time":"2025-03-27T10:06:46Z","timestamp":1743070006537,"version":"3.40.3"},"publisher-location":"Cham","reference-count":31,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319245218"},{"type":"electronic","value":"9783319245232"}],"license":[{"start":{"date-parts":[[2016,1,1]],"date-time":"2016-01-01T00:00:00Z","timestamp":1451606400000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2016]]},"DOI":"10.1007\/978-3-319-24523-2_11","type":"book-chapter","created":{"date-parts":[[2016,5,23]],"date-time":"2016-05-23T15:09:03Z","timestamp":1464016143000},"page":"249-264","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":1,"title":["Three Dimensional Visualisation of Microscope Imaging to Improve Understanding of Human Embryo Development"],"prefix":"10.1007","author":[{"given":"Anna Leida","family":"M\u00f6lder","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sarah","family":"Drury","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Nicholas","family":"Costen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Geraldine","family":"Hartshorne","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Silvester","family":"Czanner","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2016,5,22]]},"reference":[{"issue":"7","key":"11_CR1","first-page":"36","volume":"11","author":"M.D. Abramoff","year":"2004","unstructured":"Abramoff, M.D., Magalhaes, P.J., Ram, S.J.: Image processing with ImageJ. Biophoton. Int. 11(7), 36\u201342 (2004)","journal-title":"Biophoton. Int."},{"key":"11_CR2","doi-asserted-by":"crossref","unstructured":"Alm, K., Cirenajwis, H., Gisselsson, L., Gjorloff, A., Janicke, B., Molder, A., Oredsson, S., Persso, J.: Digital holography and cell studies. In: Rosen, J. (ed.) Holography, Research and Technologies. InTech (2011)","DOI":"10.5772\/15364"},{"key":"11_CR3","doi-asserted-by":"publisher","first-page":"309","DOI":"10.1385\/NI:1:4:309","volume":"1","author":"R.A. Baldock","year":"2003","unstructured":"Baldock, R.A., Bard, J.B., Burger, A., Burton, N., Christiansen, J., Feng, G., Hill, B., Houghton, D., Kaufman, M., Rao, J., et al.: EMAP and EMAGE: a framework for understanding spatially organized data. Neuroinformatics 1, 309\u2013325 (2003)","journal-title":"Neuroinformatics"},{"key":"11_CR4","doi-asserted-by":"publisher","DOI":"10.1002\/0471443395.img074","volume-title":"Optical Microscopy","author":"M.W. Davidson","year":"2002","unstructured":"Davidson, M.W., Abramowitz, M.: Optical Microscopy. Encyclopedia of Imaging Science and Technology. Wiley, New York (2002)"},{"key":"11_CR5","doi-asserted-by":"publisher","first-page":"690","DOI":"10.1038\/nmeth.2075","volume":"9","author":"F. Chaumont de","year":"2012","unstructured":"de Chaumont, F., Dallongeville, S., Chenouard, N., Herv\u00e9, N., Pop, S., Provoost, T., Meas-Yedid, V., Pankajakshan, P., Lecomte, T., Le Montagner, Y., Lagache, T., Dufour, A., Olivo-Marin, J.-C.: Icy: an open bioimage informatics platform for extended reproducible research. Nat. Methods 9, 690\u2013696 (2012)","journal-title":"Nat. Methods"},{"key":"11_CR6","doi-asserted-by":"publisher","first-page":"2588","DOI":"10.1093\/humrep\/14.10.2588","volume":"14","author":"C. Garello","year":"1999","unstructured":"Garello, C., Baker, H., Rai, J., Montgomery, S., Wilson, P., Kennedy, C.R., Hartshorne, G.M.: Pronuclear orientation, polar body placement, and embryo quality after intracytoplasmic sperm injection and in-vitro fertilization: further evidence for polarity in human oocytes? Hum. Reprod. 14, 2588\u20132595 (1999)","journal-title":"Hum. Reprod."},{"key":"11_CR7","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1002\/(SICI)1097-0320(20000101)39:1<1::AID-CYTO2>3.0.CO;2-J","volume":"39","author":"J.M. Geusebroek","year":"2000","unstructured":"Geusebroek, J.M., Cornelissen, F.: Robust autofocusing in microscopy. Cytometry 39, 1\u20139 (2000)","journal-title":"Cytometry"},{"key":"11_CR8","doi-asserted-by":"crossref","unstructured":"Giusti, A., Corani, G., Gambardella, L.M., Magli, M.C., Gianaroli, L.: Blastomere segmentation and 3D morphology measurements of early embryos from Hoffman Modulation Contrast image stacks. IEEE Int. Symp. Biomed. Imaging Nano Macro 1261\u20131264 (2010)","DOI":"10.1109\/ISBI.2010.5490225"},{"key":"11_CR9","doi-asserted-by":"publisher","first-page":"81","DOI":"10.1002\/cyto.990060202","volume":"6","author":"F.C.A. Groen","year":"1985","unstructured":"Groen, F.C.A., Young, I.T., Ligthart, G.: A comparison of different focus functions for use in autofocus algorithms. Cytometry 6, 81\u201391 (1985)","journal-title":"Cytometry"},{"key":"11_CR10","doi-asserted-by":"publisher","first-page":"1973","DOI":"10.1093\/humrep\/dem100","volume":"22","author":"F. Guerif","year":"2007","unstructured":"Guerif, F., Le Gouge, A., Giraudeau, B., Poindron, J., Bidault, R., Gasnier, O., Royere, D.: Limited value of morphological assessment at days 1 and 2 to predict blastocyst development potential: a prospective study based on 4042 embryos. Hum. Reprod. Oxf. Engl. 22, 1973\u20131981 (2007)","journal-title":"Hum. Reprod. Oxf. Engl."},{"key":"11_CR11","doi-asserted-by":"publisher","first-page":"399","DOI":"10.1093\/humrep\/deg092","volume":"18","author":"T. Hardarson","year":"2003","unstructured":"Hardarson, T., Caisander, G., Sj\u00f6gren, A., Hanson, C., Hamberger, L., Lundin, K.: A morphological and chromosomal study of blastocysts developing from morphologically suboptimal human pre-embryos compared with control blastocysts. Hum. Reprod. Oxf. Engl. 18, 399\u2013407 (2003)","journal-title":"Hum. Reprod. Oxf. Engl."},{"key":"11_CR12","doi-asserted-by":"publisher","first-page":"329","DOI":"10.1006\/dbio.2002.0631","volume":"245","author":"P.J. Heid","year":"2002","unstructured":"Heid, P.J., Voss, E., Soll, D.R.: 3D-DIASemb: a computer-assisted system for reconstructing and motion analyzing in 4D every cell and nucleus in a developing embryo. Dev. Biol. 245, 329\u2013347 (2002)","journal-title":"Dev. Biol."},{"key":"11_CR13","doi-asserted-by":"publisher","first-page":"205","DOI":"10.1111\/j.1365-2818.1977.tb00033.x","volume":"110","author":"R. Hoffman","year":"1977","unstructured":"Hoffman, R.: The modulation contrast microscope: principles and performance. J. Microsc. 110, 205\u2013222 (1977)","journal-title":"J. Microsc."},{"key":"11_CR14","volume-title":"The Science of Soap Films and Soap Bubbles","author":"C. Isenberg","year":"1992","unstructured":"Isenberg, C.: The Science of Soap Films and Soap Bubbles. Dover Publications, New York (1992)"},{"key":"11_CR15","doi-asserted-by":"publisher","first-page":"683","DOI":"10.1038\/nmeth.2047","volume":"9","author":"P. Kankaanp\u00e4\u00e4","year":"2012","unstructured":"Kankaanp\u00e4\u00e4, P., Paavolainen, L., Tiitta, S., Karjalainen, M., P\u00e4iv\u00e4rinne, J., Nieminen, J., Marjom\u00e4ki, V., Heino, J., White, D.J.: BioImageXD: an open, general-purpose and high-throughput image-processing platform. Nat. Methods 9, 683\u2013689 (2012)","journal-title":"Nat. Methods"},{"key":"11_CR16","doi-asserted-by":"crossref","unstructured":"Lamprecht, M.R., Sabatini, D.M., Carpenter, A.E.: CellProfiler: free, versatile software for automated biological image analysis. BioTechniques 42(1), 71\u201375 (2007)","DOI":"10.2144\/000112257"},{"key":"11_CR17","doi-asserted-by":"publisher","first-page":"910","DOI":"10.1038\/nmeth817","volume":"2","author":"J.W. Lichtman","year":"2005","unstructured":"Lichtman, J.W., Conchello, J.-A.: Fluorescence microscopy. Nat. Methods 2, 910\u2013919 (2005)","journal-title":"Nat. Methods"},{"key":"11_CR18","doi-asserted-by":"publisher","first-page":"86","DOI":"10.1016\/S1046-2023(03)00010-0","volume":"30","author":"Y.-C. Liu","year":"2003","unstructured":"Liu, Y.-C., Chiang, A.-S.: High-resolution confocal imaging and three-dimensional rendering. Methods 30, 86\u201393 (2003)","journal-title":"Methods"},{"key":"11_CR19","unstructured":"M\u00f6lder, A., Czanner, S., Costen, N.: Multidimensional visualisation to improve the understanding of biological data sets. In: Central European Seminar on Computer Graphics, vol.\u00a017 (2013)"},{"key":"11_CR20","first-page":"9S","volume":"16","author":"G. Nomarski","year":"1955","unstructured":"Nomarski, G.: Microinterferometrie differentiel a ondes polarisees. J. Phys. Radium 16, 9S\u201311S (1955)","journal-title":"J. Phys. Radium"},{"key":"11_CR21","doi-asserted-by":"publisher","first-page":"532","DOI":"10.1093\/humrep\/12.3.532","volume":"12","author":"D. Payne","year":"1997","unstructured":"Payne, D., Flaherty, S.P., Barry, M.F., Matthews, C.D.: Preliminary observations on polar body extrusion and pronuclear formation in human oocytes using time-lapse video cinematography. Hum. Reprod. Oxf. Engl. 12, 532\u2013541 (1997)","journal-title":"Hum. Reprod. Oxf. Engl."},{"key":"11_CR22","doi-asserted-by":"publisher","first-page":"283","DOI":"10.1002\/cyto.990160402","volume":"16","author":"J.H. Price","year":"1994","unstructured":"Price, J.H., Gough, D.A.: Comparison of phase-contrast and fluorescence digital autofocus for scanning microscopy. Cytometry 16, 283\u2013297 (1994)","journal-title":"Cytometry"},{"key":"11_CR23","first-page":"1","volume":"1","author":"K. Rafferty","year":"2012","unstructured":"Rafferty, K., Drury, S., Hartshorne, G., Czanner, S.: Use of concave corners in the segmentation of embryological datasets. Rev. Bioinforma Biom 1, 1\u20138 (2012)","journal-title":"Rev. Bioinforma Biom"},{"key":"11_CR24","doi-asserted-by":"publisher","first-page":"635","DOI":"10.1038\/nmeth.2097","volume":"9","author":"S. Rajaram","year":"2012","unstructured":"Rajaram, S., Pavie, B., Wu, L.F., Altschuler, S.J.: PhenoRipper: software for rapidly profiling microscopy images. Nat. Methods 9, 635\u2013637 (2012)","journal-title":"Nat. Methods"},{"key":"11_CR25","doi-asserted-by":"publisher","first-page":"676","DOI":"10.1038\/nmeth.2019","volume":"9","author":"J. Schindelin","year":"2012","unstructured":"Schindelin, J., Arganda-Carreras, I., Frise, E., Kaynig, V., Longair, M., Pietzsch, T., Preibisch, S., Rueden, C., Saalfeld, S., Schmid, B., Tinevez, J.-Y., White, D.J., Hartenstein, V., Eliceiri, K., Tomancak, P., Cardona, A.: Fiji: an open-source platform for biological-image analysis. Nat. Methods 9, 676\u2013682 (2012)","journal-title":"Nat. Methods"},{"key":"11_CR26","doi-asserted-by":"publisher","first-page":"604","DOI":"10.1016\/S0015-0282(99)00311-8","volume":"72","author":"W.B. Schoolcraft","year":"1999","unstructured":"Schoolcraft, W.B., Gardner, D.K., Lane, M., Schlenker, T., Hamilton, F., Meldrum, D.R.: Blastocyst culture and transfer: analysis of results and parameters affecting outcome in two in vitro fertilization programs. Fertil. Steril. 72, 604\u2013609 (1999)","journal-title":"Fertil. Steril."},{"key":"11_CR27","doi-asserted-by":"publisher","first-page":"1003","DOI":"10.1093\/humrep\/13.4.1003","volume":"13","author":"L.A. Scott","year":"1998","unstructured":"Scott, L.A., Smith, S.: The successful use of pronuclear embryo transfers the day following oocyte retrieval. Hum. Reprod. Oxf. Engl. 13, 1003\u20131013 (1998)","journal-title":"Hum. Reprod. Oxf. Engl."},{"key":"11_CR28","doi-asserted-by":"publisher","first-page":"139","DOI":"10.1002\/jemt.20118","volume":"65","author":"Y. Sun","year":"2004","unstructured":"Sun, Y., Duthaler, S.: Autofocusing in computer microscopy: selecting the optimal focus algorithm. Microsc. Res. Tech. 65, 139\u2013149 (2004)","journal-title":"Microsc. Res. Tech."},{"key":"11_CR29","doi-asserted-by":"publisher","first-page":"345","DOI":"10.1016\/j.cub.2005.12.044","volume":"16","author":"O. Tassy","year":"2006","unstructured":"Tassy, O., Daian, F., Hudson, C., Bertrand, V., Lemaire, P.: A quantitative approach to the study of cell shapes and interactions during early chordate embryogenesis. Curr. Biol. 16, 345\u2013358 (2006)","journal-title":"Curr. Biol."},{"key":"11_CR30","doi-asserted-by":"publisher","first-page":"70","DOI":"10.1109\/TAU.1967.1161901","volume":"15","author":"P. Welch","year":"1967","unstructured":"Welch, P.: The use of fast Fourier transform for the estimation of power spectra: a method based on time averaging over short, modified periodograms. IEEE Trans. Audio Electroacoust. 15, 70\u201373 (1967)","journal-title":"IEEE Trans. Audio Electroacoust."},{"key":"11_CR31","doi-asserted-by":"publisher","first-page":"711","DOI":"10.1038\/nmeth.2046","volume":"9","author":"Q. Zhong","year":"2012","unstructured":"Zhong, Q., Busetto, A.G., Fededa, J.P., Buhmann, J.M., Gerlich, D.W.: Unsupervised modeling of cell morphology dynamics for time-lapse microscopy. Nat. Methods 9, 711\u2013713 (2012)","journal-title":"Nat. Methods"}],"container-title":["Mathematics and Visualization","Visualization in Medicine and Life Sciences III"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-24523-2_11","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,20]],"date-time":"2019-05-20T16:00:59Z","timestamp":1558368059000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-319-24523-2_11"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016]]},"ISBN":["9783319245218","9783319245232"],"references-count":31,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-24523-2_11","relation":{},"ISSN":["1612-3786","2197-666X"],"issn-type":[{"type":"print","value":"1612-3786"},{"type":"electronic","value":"2197-666X"}],"subject":[],"published":{"date-parts":[[2016]]},"assertion":[{"value":"22 May 2016","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}}]}}