{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,25]],"date-time":"2025-03-25T15:02:12Z","timestamp":1742914932078,"version":"3.40.3"},"publisher-location":"Cham","reference-count":20,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319301389"},{"type":"electronic","value":"9783319301396"}],"license":[{"start":{"date-parts":[[2016,1,1]],"date-time":"2016-01-01T00:00:00Z","timestamp":1451606400000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2016]]},"DOI":"10.1007\/978-3-319-30139-6_22","type":"book-chapter","created":{"date-parts":[[2016,2,19]],"date-time":"2016-02-19T08:35:02Z","timestamp":1455870902000},"page":"274-285","source":"Crossref","is-referenced-by-count":1,"title":["Approximation Algorithms for Three Dimensional Protein Folding"],"prefix":"10.1007","author":[{"given":"Dipan Lal","family":"Shaw","sequence":"first","affiliation":[]},{"given":"A. S. M. Shohidull","family":"Islam","sequence":"additional","affiliation":[]},{"given":"Shuvasish","family":"Karmaker","sequence":"additional","affiliation":[]},{"given":"M. Sohel","family":"Rahman","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"issue":"3","key":"22_CR1","doi-asserted-by":"publisher","first-page":"276","DOI":"10.1089\/cmb.1997.4.275","volume":"4","author":"R Agarwala","year":"1997","unstructured":"Agarwala, R., Batzogloa, S., Dancik, V., Decatur, S., Hannenhalli, S., Farach, M., Muthukrishnan, S., Skiena, S.: Local rules for protein folding on a triangular lattice and generalized hydrophobicity in the HP model. J. Comput. Biol. 4(3), 276\u2013296 (1997)","journal-title":"J. Comput. Biol."},{"issue":"1","key":"22_CR2","doi-asserted-by":"publisher","first-page":"27","DOI":"10.1089\/cmb.1998.5.27","volume":"5","author":"B Berger","year":"1998","unstructured":"Berger, B., Leighton, T.: Protein folding in the hydrophobic-hydrophilic (HP) model is NP-complete. J. Comput. Biol. 5(1), 27\u201340 (1998)","journal-title":"J. Comput. Biol."},{"issue":"2","key":"22_CR3","doi-asserted-by":"publisher","first-page":"230","DOI":"10.1016\/j.dam.2006.04.031","volume":"155","author":"H-J B\u00f6ckenhauer","year":"2007","unstructured":"B\u00f6ckenhauer, H.-J., Bongartz, D.: Protein folding in the hp model on grid lattices with diagonals. Discrete Appl. Math. 155(2), 230\u2013256 (2007)","journal-title":"Discrete Appl. Math."},{"key":"22_CR4","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"369","DOI":"10.1007\/978-3-540-87361-7_31","volume-title":"Algorithms in Bioinformatics","author":"H-J B\u00f6ckenhauer","year":"2008","unstructured":"B\u00f6ckenhauer, H.-J., Dayem Ullah, A.Z.M., Kapsokalivas, L., Steinh\u00f6fel, K.: A local move set for protein folding in triangular lattice models. In: Crandall, K.A., Lagergren, J. (eds.) WABI 2008. LNCS, vol. 5251, pp. 369\u2013381. Springer, Heidelberg (2008)"},{"issue":"3","key":"22_CR5","doi-asserted-by":"publisher","first-page":"423","DOI":"10.1089\/cmb.1998.5.423","volume":"5","author":"P Crescenzi","year":"1998","unstructured":"Crescenzi, P., Goldman, D., Papadimitriou, C.H., Piccolboni, A., Yannakakis, M.: On the complexity of protein folding. J. Comput. Biol. 5(3), 423\u2013465 (1998)","journal-title":"J. Comput. Biol."},{"key":"22_CR6","doi-asserted-by":"publisher","first-page":"1501","DOI":"10.1021\/bi00327a032","volume":"24","author":"KA Dill","year":"1985","unstructured":"Dill, K.A.: Theory for the folding and stability of globular proteins. Biochemistry 24, 1501\u20131509 (1985)","journal-title":"Biochemistry"},{"issue":"1","key":"22_CR7","doi-asserted-by":"publisher","first-page":"53","DOI":"10.1089\/cmb.1996.3.53","volume":"3","author":"W Hart","year":"1996","unstructured":"Hart, W., Istrail, S.: Fast protein folding in the hydrophobic-hydrophilic model within three-eighths of optimal. J. Comput. Biol. 3(1), 53\u201396 (1996)","journal-title":"J. Comput. Biol."},{"issue":"3","key":"22_CR8","doi-asserted-by":"publisher","first-page":"241","DOI":"10.1089\/cmb.1997.4.241","volume":"4","author":"W Hart","year":"1997","unstructured":"Hart, W., Istrail, S.: Lattice and o-lattice side chain models of protein folding: linear time structure prediction better than 86\u00a0% of optimal. Comput. Biol. 4(3), 241\u2013259 (1997)","journal-title":"Comput. Biol."},{"key":"22_CR9","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"crossref","first-page":"212","DOI":"10.1007\/3-540-48481-7_19","volume-title":"Algorithms - ESA\u201999","author":"V Heun","year":"1999","unstructured":"Heun, V.: Approximate protein folding in the HP side chain model on extended cubic lattices (extended abstract). In: Ne\u0161et\u0159il, J. (ed.) ESA 1999. LNCS, vol. 1643, pp. 212\u2013223. Springer, Heidelberg (1999)"},{"key":"22_CR10","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"867","DOI":"10.1007\/11941439_91","volume-title":"AI 2006: Advances in Artificial Intelligence","author":"MT Hoque","year":"2006","unstructured":"Hoque, M.T., Chetty, M., Dooley, L.S.: A hybrid genetic algorithm for 2D FCC hydrophobic-hydrophilic lattice model to predict protein folding. In: Sattar, A., Kang, B.-H. (eds.) AI 2006. LNCS, vol. 4304, pp. 867\u2013876. Springer, Heidelberg (2006)"},{"key":"22_CR11","doi-asserted-by":"crossref","unstructured":"Hoque, M.T., Chetty, M., Sattar, A.: Protein folding prediction in 3D FCC HP lattice model using genetic algorithm. In: IEEE Congress on Evolutionary Computation, pp. 4138\u20134145 (2007)","DOI":"10.1109\/CEC.2007.4425011"},{"key":"22_CR12","doi-asserted-by":"publisher","first-page":"30","DOI":"10.1186\/1748-7188-8-30","volume":"8","author":"ASMS Islam","year":"2013","unstructured":"Islam, A.S.M.S., Rahman, M.S.: On the protein folding problem in 2D-triangular lattices. Algorithms Mol. Biol. 8, 30 (2013)","journal-title":"Algorithms Mol. Biol."},{"key":"22_CR13","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"244","DOI":"10.1007\/978-3-642-45278-9_21","volume-title":"Combinatorial Algorithms","author":"ASMS Islam","year":"2013","unstructured":"Islam, A.S.M.S., Rahman, M.S.: Protein folding in 2D-triangular lattice revisited. In: Lecroq, T., Mouchard, L. (eds.) IWOCA 2013. LNCS, vol. 8288, pp. 244\u2013257. Springer, Heidelberg (2013)"},{"issue":"1","key":"22_CR14","doi-asserted-by":"publisher","first-page":"19","DOI":"10.1142\/S0219720005000850","volume":"3","author":"M Jiang","year":"2005","unstructured":"Jiang, M., Zhu, B.: Protein folding on the hexagonal lattice in the HP model. J. Bioinform. Comput. Biol. 3(1), 19\u201334 (2005)","journal-title":"J. Bioinform. Comput. Biol."},{"issue":"3","key":"22_CR15","doi-asserted-by":"publisher","first-page":"203","DOI":"10.1007\/BF01303193","volume":"81","author":"I Kessler","year":"1976","unstructured":"Kessler, I., Livingston, M.: The expected number of parts in a partition of n. Monatshefte f\u00fcr Mathematik 81(3), 203\u2013212 (1976)","journal-title":"Monatshefte f\u00fcr Mathematik"},{"key":"22_CR16","unstructured":"Mauri, G., Piccolboni, A., Pavesi, G.: Approximation algorithms for protein folding prediction. In: Symposium on Discrete Algorithms (SODA), pp. 945\u2013946 (1999)"},{"key":"22_CR17","unstructured":"Newman, A.: A new algorithm for protein folding in the HP model. In: Symposium on Discrete Algorithms (SODA), pp. 876\u2013884 (2002)"},{"key":"22_CR18","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"369","DOI":"10.1007\/978-3-540-24698-5_41","volume-title":"LATIN 2004: Theoretical Informatics","author":"A Newman","year":"2004","unstructured":"Newman, A., Ruhl, M.: Combinatorial problems on strings with applications to protein folding. In: Farach-Colton, M. (ed.) LATIN 2004. LNCS, vol. 2976, pp. 369\u2013378. Springer, Heidelberg (2004)"},{"issue":"S\u20132","key":"22_CR19","doi-asserted-by":"publisher","first-page":"S7","DOI":"10.1186\/1471-2105-15-S2-S7","volume":"15","author":"DL Shaw","year":"2014","unstructured":"Shaw, D.L., Islam, A.S.M.S., Rahman, M.S., Hasan, M.: Protein folding in HP model on hexagonal lattices with diagonals. BMC Bioinform. 15(S\u20132), S7 (2014)","journal-title":"BMC Bioinform."},{"key":"22_CR20","doi-asserted-by":"publisher","first-page":"75","DOI":"10.1006\/jmbi.1993.1258","volume":"231","author":"R Unger","year":"1993","unstructured":"Unger, R., Moult, J.: Genetic algorithms for protein folding simulations. J. Mol. Biol. 231, 75\u201381 (1993)","journal-title":"J. Mol. Biol."}],"container-title":["Lecture Notes in Computer Science","WALCOM: Algorithms and Computation"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-30139-6_22","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,6,1]],"date-time":"2019-06-01T10:58:48Z","timestamp":1559386728000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-319-30139-6_22"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016]]},"ISBN":["9783319301389","9783319301396"],"references-count":20,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-30139-6_22","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2016]]}}}