{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,26]],"date-time":"2025-03-26T21:16:24Z","timestamp":1743023784719,"version":"3.40.3"},"publisher-location":"Cham","reference-count":9,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319317434"},{"type":"electronic","value":"9783319317441"}],"license":[{"start":{"date-parts":[[2016,1,1]],"date-time":"2016-01-01T00:00:00Z","timestamp":1451606400000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2016]]},"DOI":"10.1007\/978-3-319-31744-1_38","type":"book-chapter","created":{"date-parts":[[2016,3,24]],"date-time":"2016-03-24T06:24:58Z","timestamp":1458800698000},"page":"426-433","source":"Crossref","is-referenced-by-count":1,"title":["AC-DIAMOND: Accelerating Protein Alignment via Better SIMD Parallelization and Space-Efficient Indexing"],"prefix":"10.1007","author":[{"given":"Huijun","family":"Mai","sequence":"first","affiliation":[]},{"given":"Dinghua","family":"Li","sequence":"additional","affiliation":[]},{"given":"Yifan","family":"Zhang","sequence":"additional","affiliation":[]},{"given":"Henry Chi-Ming","family":"Leung","sequence":"additional","affiliation":[]},{"given":"Ruibang","family":"Luo","sequence":"additional","affiliation":[]},{"given":"Hing-Fung","family":"Ting","sequence":"additional","affiliation":[]},{"given":"Tak-Wah","family":"Lam","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2016,3,25]]},"reference":[{"issue":"1","key":"38_CR1","doi-asserted-by":"publisher","first-page":"59","DOI":"10.1038\/nmeth.3176","volume":"12","author":"B Buchfink","year":"2015","unstructured":"Buchfink, B., Xie, C., Huson, D.H.: Fast and sensitive protein alignment using DIAMOND. Nat. Methods 12(1), 59\u201360 (2015)","journal-title":"Nat. Methods"},{"issue":"1","key":"38_CR2","doi-asserted-by":"publisher","first-page":"159","DOI":"10.1186\/1471-2105-12-159","volume":"12","author":"Y Ye","year":"2011","unstructured":"Ye, Y., Choi, J.H., Tang, H.: RAPSearch: a fast protein similarity search tool for short reads. BMC Bioinform. 12(1), 159 (2011)","journal-title":"BMC Bioinform."},{"issue":"1","key":"38_CR3","doi-asserted-by":"publisher","first-page":"125","DOI":"10.1093\/bioinformatics\/btr595","volume":"28","author":"Y Zhao","year":"2012","unstructured":"Zhao, Y., Tang, H., Ye, Y.: RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data. Bioinformatics 28(1), 125\u2013126 (2012)","journal-title":"Bioinformatics"},{"key":"38_CR4","doi-asserted-by":"crossref","unstructured":"Huson, D.H., Xie, C.: A poor man\u2019s BLASTX-high-throughput metagenomic protein database search using PAUDA. Bioinformatics, btt254 (2013)","DOI":"10.1093\/bioinformatics\/btt254"},{"key":"38_CR5","doi-asserted-by":"crossref","unstructured":"Suzuki, S., Kakuta, M., Ishida, T., Akiyama, Y.: Faster sequence homology searches by clustering subsequences. Bioinformatics, btu780 (2015)","DOI":"10.1093\/bioinformatics\/btu780"},{"issue":"3","key":"38_CR6","doi-asserted-by":"publisher","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","volume":"215","author":"SF Altschul","year":"1990","unstructured":"Altschul, S.F., Gish, W., Miller, W., Myers, E.W., Lipman, D.J.: Basic local alignment search tool. J. Mol. Biol. 215(3), 403\u2013410 (1990)","journal-title":"J. Mol. Biol."},{"key":"38_CR7","doi-asserted-by":"crossref","unstructured":"Li, D., Liu, C.M., Luo, R., Sadakane, K., Lam, T.W.: MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph. Bioinformatics, btv033 (2015)","DOI":"10.1093\/bioinformatics\/btv033"},{"issue":"13","key":"38_CR8","doi-asserted-by":"publisher","first-page":"4904","DOI":"10.1073\/pnas.1402564111","volume":"111","author":"AC Howe","year":"2014","unstructured":"Howe, A.C., Jansson, J.K., Malfatti, S.A., Tringe, S.G., Tiedje, J.M., Brown, C.T.: Tackling soil diversity with the assembly of large, complex metagenomes. Proc. Nat. Acad. Sci. 111(13), 4904\u20134909 (2014)","journal-title":"Proc. Nat. Acad. Sci."},{"issue":"1","key":"38_CR9","doi-asserted-by":"publisher","first-page":"195","DOI":"10.1016\/0022-2836(81)90087-5","volume":"147","author":"TF Smith","year":"1981","unstructured":"Smith, T.F., Waterman, M.S.: Identification of common molecular subsequences. J. Mol. Biol. 147(1), 195\u2013197 (1981)","journal-title":"J. Mol. Biol."}],"container-title":["Lecture Notes in Computer Science","Bioinformatics and Biomedical Engineering"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-31744-1_38","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,6,1]],"date-time":"2019-06-01T18:51:02Z","timestamp":1559415062000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-319-31744-1_38"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016]]},"ISBN":["9783319317434","9783319317441"],"references-count":9,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-31744-1_38","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2016]]}}}