{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,9]],"date-time":"2024-09-09T04:41:44Z","timestamp":1725856904810},"publisher-location":"Cham","reference-count":15,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319387819"},{"type":"electronic","value":"9783319387826"}],"license":[{"start":{"date-parts":[[2016,1,1]],"date-time":"2016-01-01T00:00:00Z","timestamp":1451606400000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2016]]},"DOI":"10.1007\/978-3-319-38782-6_21","type":"book-chapter","created":{"date-parts":[[2016,5,26]],"date-time":"2016-05-26T13:05:32Z","timestamp":1464267932000},"page":"253-257","source":"Crossref","is-referenced-by-count":0,"title":["Selectoscope: A Modern Web-App for Positive Selection Analysis of Genomic Data"],"prefix":"10.1007","author":[{"given":"Andrey V.","family":"Zaika","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Iakov I.","family":"Davydov","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mikhail S.","family":"Gelfand","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2016,5,27]]},"reference":[{"issue":"8","key":"21_CR1","doi-asserted-by":"crossref","first-page":"1129","DOI":"10.1093\/bioinformatics\/btt760","volume":"30","author":"M Valle","year":"2014","unstructured":"Valle, M., Schabauer, H., Pacher, C., Stockinger, H., Stamatakis, A., Robinson-Rechavi, M., Salamin, N.: Optimisation strategies for fast detection of positive selection on phylogenetic trees. Bioinformatics 30(8), 1129\u20131137 (2014)","journal-title":"Bioinformatics"},{"issue":"8","key":"21_CR2","doi-asserted-by":"crossref","first-page":"1586","DOI":"10.1093\/molbev\/msm088","volume":"24","author":"Z Yang","year":"2007","unstructured":"Yang, Z.: PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24(8), 1586\u20131591 (2007)","journal-title":"Mol. Biol. Evol."},{"issue":"1","key":"21_CR3","doi-asserted-by":"crossref","first-page":"431","DOI":"10.1093\/genetics\/155.1.431","volume":"155","author":"Z Yang","year":"2000","unstructured":"Yang, Z., Nielsen, R., Goldman, N., Pedersen, A.M.: Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155(1), 431\u2013449 (2000)","journal-title":"Genetics"},{"issue":"12","key":"21_CR4","doi-asserted-by":"crossref","first-page":"2472","DOI":"10.1093\/molbev\/msi237","volume":"22","author":"J Zhang","year":"2005","unstructured":"Zhang, J., Nielsen, R., Yang, Z.: Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Mol. Biol. Evol. 22(12), 2472\u20132479 (2005). Epub 2005 Aug 17","journal-title":"Mol. Biol. Evol."},{"issue":"11","key":"21_CR5","doi-asserted-by":"crossref","first-page":"3033","DOI":"10.1093\/molbev\/msr125","volume":"28","author":"SL Kosakovsky Pond","year":"2011","unstructured":"Kosakovsky Pond, S.L., Murrell, B., Fourment, M., Frost, S.D., Delport, W., Scheffler, K.A.: A random effects branch-site model for detecting episodic diversifying selection. Mol. Biol. Evol. 28(11), 3033\u20133043 (2011). doi: 10.1093\/molbev\/msr125 . Epub 2011 Jun 13","journal-title":"Mol. Biol. Evol."},{"issue":"7","key":"21_CR6","doi-asserted-by":"crossref","first-page":"e1002764","DOI":"10.1371\/journal.pgen.1002764","volume":"8","author":"B Murrell","year":"2012","unstructured":"Murrell, B., Wertheim, J.O., Moola, S., Weighill, T., Scheffler, K., Kosakovsky Pond, S.L.: Detecting individual sites subject to episodic diversifying selection. PLoS Genet. 8(7), e1002764 (2012). doi: 10.1371\/journal.pgen.1002764 . Epub 2012 Jul 12","journal-title":"PLoS Genet."},{"issue":"8","key":"21_CR7","doi-asserted-by":"crossref","first-page":"1979","DOI":"10.1093\/molbev\/msu174","volume":"31","author":"B Redelings","year":"2014","unstructured":"Redelings, B.: Erasing errors due to alignment ambiguity when estimating positive selection. Mol. Biol. Evol. 31(8), 1979\u20131993 (2014). doi: 10.1093\/molbev\/msu174 . Epub 2014 May 27","journal-title":"Mol. Biol. Evol."},{"issue":"10","key":"21_CR8","doi-asserted-by":"crossref","first-page":"2257","DOI":"10.1093\/molbev\/msq115","volume":"27","author":"W Fletcher","year":"2010","unstructured":"Fletcher, W., Yang, Z.: The effect of insertions, deletions, and alignment errors on the branch-site test of positive selection. Mol. Biol. Evol. 27(10), 2257\u20132267 (2010). doi: 10.1093\/molbev\/msq115 . Epub 2010 May 5","journal-title":"Mol. Biol. Evol."},{"issue":"Suppl. 2","key":"21_CR9","doi-asserted-by":"crossref","first-page":"11","DOI":"10.4137\/EBO.S30902","volume":"11","author":"Y Diekmann","year":"2016","unstructured":"Diekmann, Y., Pereira-Leal, J.B.: Gene tree affects inference of sites under selection by the branch-site test of positive selection. Evol. Bioinform. 11(Suppl. 2), 11\u201317 (2016). doi: 10.4137\/EBO.S30902 . eCollection 2015","journal-title":"Evol. Bioinform."},{"issue":"W1","key":"21_CR10","doi-asserted-by":"crossref","first-page":"W7","DOI":"10.1093\/nar\/gkv318","volume":"43","author":"I Sela","year":"2015","unstructured":"Sela, I., Ashkenazy, H., Katoh, K., Pupko, T.: GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters. Nucleic Acids Res. 43(W1), W7\u201314 (2015). doi: 10.1093\/nar\/gkv318 . Epub 2015 Apr 16","journal-title":"Nucleic Acids Res."},{"issue":"3","key":"21_CR11","doi-asserted-by":"crossref","first-page":"307","DOI":"10.1093\/sysbio\/syq010","volume":"59","author":"S Guindon","year":"2010","unstructured":"Guindon, S., Dufayard, J.F., Lefort, V., Anisimova, M., Hordijk, W., Gascuel, O.: New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 59(3), 307\u2013321 (2010)","journal-title":"Syst. Biol."},{"issue":"4","key":"21_CR12","doi-asserted-by":"crossref","first-page":"772","DOI":"10.1093\/molbev\/mst010","volume":"30","author":"K Katoh","year":"2013","unstructured":"Katoh, K., Standley, D.M.: MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol. Biol. Evol. 30(4), 772\u2013780 (2013). doi: 10.1093\/molbev\/mst010 . Epub 2013 Jan 16","journal-title":"Mol. Biol. Evol."},{"issue":"1","key":"21_CR13","doi-asserted-by":"crossref","first-page":"431","DOI":"10.1093\/genetics\/155.1.431","volume":"155","author":"Z Yang","year":"2000","unstructured":"Yang, Z., Nielsen, R., Goldman, N., Pedersen, A.M.: Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155(1), 431\u2013449 (2000)","journal-title":"Genetics"},{"key":"21_CR14","unstructured":"BioJS, the leading, open-source JavaScript visualization library for life sciences. https:\/\/www.biojs.net\/"},{"key":"21_CR15","unstructured":"Docker installation guide. https:\/\/docs.docker.com\/engine\/installation\/"}],"container-title":["Lecture Notes in Computer Science","Bioinformatics Research and Applications"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-38782-6_21","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,6,30]],"date-time":"2022-06-30T16:53:06Z","timestamp":1656607986000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-319-38782-6_21"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016]]},"ISBN":["9783319387819","9783319387826"],"references-count":15,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-38782-6_21","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2016]]}}}