{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,6,4]],"date-time":"2025-06-04T04:18:28Z","timestamp":1749010708131,"version":"3.41.0"},"publisher-location":"Cham","reference-count":34,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319420066"},{"type":"electronic","value":"9783319420073"}],"license":[{"start":{"date-parts":[[2016,1,1]],"date-time":"2016-01-01T00:00:00Z","timestamp":1451606400000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2016]]},"DOI":"10.1007\/978-3-319-42007-3_38","type":"book-chapter","created":{"date-parts":[[2016,7,13]],"date-time":"2016-07-13T08:38:22Z","timestamp":1468399102000},"page":"437-450","source":"Crossref","is-referenced-by-count":2,"title":["3D Protein Structure Prediction with BSA-TS Algorithm"],"prefix":"10.1007","author":[{"given":"Yan","family":"Xu","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Changjun","family":"Zhou","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Qiang","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Bin","family":"Wang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2016,7,14]]},"reference":[{"issue":"Suppl 15","key":"38_CR1","doi-asserted-by":"crossref","first-page":"S1","DOI":"10.1186\/1471-2105-15-S15-S1","volume":"15","author":"XL Lin","year":"2014","unstructured":"Lin, X.L., Zhang, X.L., Zhou, F.L.: Protein structure prediction with local adjust Tabu search algorithm. BMC Bioinformatics 15(Suppl 15), S1 (2014)","journal-title":"BMC Bioinformatics"},{"issue":"2","key":"38_CR2","first-page":"140","volume":"13","author":"CJ Lin","year":"2011","unstructured":"Lin, C.J., Shih, C.S.: Protein 3D HP model folding simulation using a hybrid of genetic algorithm and particle swarm optimization. Int. J. Fuzzy Syst. 13(2), 140\u2013147 (2011)","journal-title":"Int. J. Fuzzy Syst."},{"key":"38_CR3","first-page":"1469","volume":"E48","author":"FH Stillinger","year":"1993","unstructured":"Stillinger, F.H., Head-Gordon, T., Hirshfel, C.L.: Toy model for protein folding. Phys. Rev. E48, 1469\u20131477 (1993)","journal-title":"Phys. Rev."},{"key":"38_CR4","doi-asserted-by":"crossref","first-page":"88","DOI":"10.1016\/j.asoc.2013.10.029","volume":"15","author":"FL Cust\u00f3dio","year":"2014","unstructured":"Cust\u00f3dio, F.L., Barbosa, H.J.C., Dardenne, L.E.: A multiple minima genetic algorithm for protein structure prediction. Appl. Soft Comput. 15, 88\u201399 (2014)","journal-title":"Appl. Soft Comput."},{"issue":"3","key":"38_CR5","first-page":"042715","volume":"90","author":"JF Liu","year":"2014","unstructured":"Liu, J.F., Song, B.B., Yao, Y.L., Yu, X., Liu, W.J., Liu, Z.X.: Wang-Landau sampling in face-centered-cube hydrophobic-hydrophilic lattice model proteins. Phys. Rev. E 90(3), 042715 (2014)","journal-title":"Phys. Rev. E"},{"issue":"3","key":"38_CR6","first-page":"17","volume":"38","author":"JF Liu","year":"2012","unstructured":"Liu, J.F., Li, G., Yu, J., Yao, Y.L.: Heuristic energy landscape paving for protein folding simulation in the three-dimensional HP lattice model. Comput. Biol. Chem. 38(3), 17\u201326 (2012)","journal-title":"Comput. Biol. Chem."},{"key":"38_CR7","doi-asserted-by":"crossref","first-page":"273","DOI":"10.1063\/1.474357","volume":"107","author":"A Irback","year":"1997","unstructured":"Irback, A., Peterson, C., Potthast, F., Sommelius, O.: Local interactions and protein folding: a three-dimensional off-lattice approach. J. Chem. Phys. 107, 273\u2013282 (1997)","journal-title":"J. Chem. Phys."},{"key":"38_CR8","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.compbiolchem.2014.11.004","volume":"54","author":"B Li","year":"2015","unstructured":"Li, B., Chiong, R., Lin, M.: A balance-evolution artificial bee colony algorithm for protein structure optimization based on a three-dimensional AB off-lattice model. Comput. Biol. Chem. 54, 1\u201312 (2015)","journal-title":"Comput. Biol. Chem."},{"issue":"3","key":"38_CR9","first-page":"142","volume":"47","author":"JF Liu","year":"2013","unstructured":"Liu, J.F., Sun, Y.Y., Li, G., Song, B.B., Huang, W.B.: Heuristic-based tabu search algorithm for folding two-dimensional AB off-lattice model proteins. Comput. Biol. Chem. 47(3), 142\u2013148 (2013)","journal-title":"Comput. Biol. Chem."},{"key":"38_CR10","doi-asserted-by":"crossref","first-page":"18","DOI":"10.5923\/j.bioinformatics.20110101.03","volume":"1","author":"RF Mansour","year":"2011","unstructured":"Mansour, R.F.: Applying an evolutionary algorithm for protein structure prediction. Am. J. Bioinform. Res. 1, 18\u201323 (2011)","journal-title":"Am. J. Bioinform. Res."},{"key":"38_CR11","first-page":"927","volume":"66","author":"WH Wang","year":"2011","unstructured":"Wang, W.H.: Ordering of unicyclic graphs with perfect matching by minimal energies. MATCH Commun. Math. Comput. Chem. 66, 927\u2013942 (2011)","journal-title":"MATCH Commun. Math. Comput. Chem."},{"issue":"2","key":"38_CR12","first-page":"501","volume":"65","author":"X Jin","year":"2011","unstructured":"Jin, X., Zhang, F.: The jones polynomial for polyhedral links. MATCH Commun. Math. Comput. Chem. 65(2), 501\u2013520 (2011)","journal-title":"MATCH Commun. Math. Comput. Chem."},{"key":"38_CR13","doi-asserted-by":"crossref","unstructured":"Guo, H., Lv, Q., Wu, J.Z., Xu, H., Qian, P.: Solving 2D HP protein folding problem by parallel ant colonies. In: International Conference on Biomedical Engineering and Informatics, pp. 1\u20135 (2009)","DOI":"10.1109\/BMEI.2009.5301975"},{"issue":"9","key":"38_CR14","doi-asserted-by":"crossref","first-page":"3883","DOI":"10.1007\/s00894-013-1907-8","volume":"19","author":"CJ Zhou","year":"2013","unstructured":"Zhou, C.J., Hou, C.X., Zhang, Q., Wei, X.P.: Enhanced hybrid search algorithm for protein structure prediction using the 3D-HP lattice model. J. Mol. Model. 19(9), 3883\u20133891 (2013)","journal-title":"J. Mol. Model."},{"issue":"24","key":"38_CR15","first-page":"46","volume":"47","author":"H Guo","year":"2011","unstructured":"Guo, H., Lan, R., Chen, X., Wang, Y.X.: Tabu search-particle swarm algorithm for protein folding prediction. Comput. Eng. Appl. 47(24), 46\u201350 (2011)","journal-title":"Comput. Eng. Appl."},{"issue":"1","key":"38_CR16","doi-asserted-by":"crossref","first-page":"1","DOI":"10.5815\/ijieeb.2011.01.01","volume":"3","author":"X Chen","year":"2011","unstructured":"Chen, X., Lv, M.W., Zhao, L.H., Zhang, X.D.: An improved particle swarm optimization for protein folding prediction. Int. J. Inf. Eng. Electron. Bus. 3(1), 1\u20138 (2011)","journal-title":"Int. J. Inf. Eng. Electron. Bus."},{"issue":"7","key":"38_CR17","first-page":"1","volume":"20","author":"CJ Zhou","year":"2014","unstructured":"Zhou, C.J., Hou, C.X., Wei, X.P., Zhang, Q.: Improved hybrid optimization algorithm for 3D protein structure prediction. J. Mol. Model. 20(7), 1\u201312 (2014)","journal-title":"J. Mol. Model."},{"issue":"3","key":"38_CR18","doi-asserted-by":"crossref","first-page":"241","DOI":"10.3233\/FI-2015-1155","volume":"136","author":"YZ Li","year":"2015","unstructured":"Li, Y.Z., Zhou, C.J., Zheng, X.D.: Artificial bee colony algorithm for the protein structure prediction based on the Toy model. Fundamenta Informaticae 136(3), 241\u2013252 (2015)","journal-title":"Fundamenta Informaticae"},{"issue":"5","key":"38_CR19","doi-asserted-by":"crossref","first-page":"868","DOI":"10.1007\/s11390-013-1384-7","volume":"28","author":"GF Mario","year":"2013","unstructured":"Mario, G.F., Eduardo, R.T., Gregorio, T.P.: Comparative analysis of different evaluation functions for protein structure prediction under the HP model. J. Comput. Sci. Technol. 28(5), 868\u2013889 (2013)","journal-title":"J. Comput. Sci. Technol."},{"issue":"Suppl 1","key":"38_CR20","doi-asserted-by":"crossref","first-page":"S6","DOI":"10.1186\/1752-0509-4-S1-S6","volume":"4","author":"XL Zhang","year":"2010","unstructured":"Zhang, X.L., Wang, T., Luo, H.P., Yang, J.Y., Deng, Y.P., Tang, J.S., Yang, M.Q.: 3D protein structure prediction with genetic tabu search algorithm. BMC Syst. Biol. 4(Suppl 1), S6 (2010)","journal-title":"BMC Syst. Biol."},{"key":"38_CR21","doi-asserted-by":"crossref","unstructured":"Nanda, D.J., Jaya, S.: Particle swarm optimization with backpacking in protein structure prediction problem. J. Mol. Model., pp. 734\u2013738 (2012)","DOI":"10.1109\/ICSPCC.2012.6335672"},{"issue":"1","key":"38_CR22","first-page":"47","volume":"40","author":"Y Gao","year":"2004","unstructured":"Gao, Y., Xie, S.L.: Particle swarm optimization algorithm based on simulated annealing. Comput. Eng. Appl. 40(1), 47\u201350 (2004)","journal-title":"Comput. Eng. Appl."},{"issue":"8","key":"38_CR23","doi-asserted-by":"crossref","first-page":"937","DOI":"10.1016\/j.ins.2005.02.003","volume":"176","author":"DBF Van","year":"2006","unstructured":"Van, D.B.F., Engelbrecht, A.P.: A study of particle swarm optimization particle trajectories. Inf. Sci. 176(8), 937\u2013971 (2006)","journal-title":"Inf. Sci."},{"key":"38_CR24","doi-asserted-by":"crossref","first-page":"031906","DOI":"10.1103\/PhysRevE.71.031906","volume":"71","author":"M Bachmann","year":"2005","unstructured":"Bachmann, M., Arkin, H., Janke, W.: Multicanonical study of coarse-grained off-lattice models for folding heteropolymers. Phys. Rev. E 71, 031906 (2005)","journal-title":"Phys. Rev. E"},{"key":"38_CR25","doi-asserted-by":"crossref","first-page":"011916","DOI":"10.1103\/PhysRevE.72.011916","volume":"72","author":"SY Kim","year":"2005","unstructured":"Kim, S.Y., Lee, S.B., Lee, J.: Structure optimization by conformational space annealing in an off-lattice protein model. Phys. Rev. E 72, 011916 (2005)","journal-title":"Phys. Rev. E"},{"key":"38_CR26","doi-asserted-by":"crossref","first-page":"011913","DOI":"10.1103\/PhysRevE.76.011913","volume":"76","author":"J Kim","year":"2007","unstructured":"Kim, J., Straub, J.E., Keyes, T.: Structure optimization and folding mechanisms of off-lattice protein models using statistical temperature molecular dynamics simulation: statistical temperature annealing. Phys. Rev. E 76, 011913 (2007)","journal-title":"Phys. Rev. E"},{"key":"38_CR27","doi-asserted-by":"crossref","first-page":"2615","DOI":"10.1088\/1674-1056\/18\/6\/082","volume":"18","author":"JF Liu","year":"2009","unstructured":"Liu, J.F.: Structure optimization by heuristic algorithm in a coarse-grained off-lattice model. Chin. Phys. B 18, 2615\u20132621 (2009)","journal-title":"Chin. Phys. B"},{"issue":"11","key":"38_CR28","first-page":"20","volume":"28","author":"WY Li","year":"2012","unstructured":"Li, W.Y., Wang, Y.: Multi-population genetic algorithm for three-dimensional protein structure prediction. Fujian Comput. 28(11), 20\u201324 (2012)","journal-title":"Fujian Comput."},{"key":"38_CR29","doi-asserted-by":"crossref","first-page":"8121","DOI":"10.1016\/j.amc.2013.02.017","volume":"219","author":"C Pinar","year":"2013","unstructured":"Pinar, C.: Backtracking search optimization algorithm for numerical optimization problems. Appl. Math. Comput. 219, 8121\u20138144 (2013)","journal-title":"Appl. Math. Comput."},{"issue":"9","key":"38_CR30","first-page":"2543","volume":"34","author":"XJ Wang","year":"2014","unstructured":"Wang, X.J., Liu, S.Y., Tian, W.K.: Backtracking search optimization algorithm with high efficiency mutation scale factor and greedy crossover strategy. Comput. Appl. 34(9), 2543\u20132546 (2014)","journal-title":"Comput. Appl."},{"key":"38_CR31","series-title":"Lecture Notes in Computer Science (Lecture Notes in Artificial Intelligence)","doi-asserted-by":"crossref","first-page":"1104","DOI":"10.1007\/978-3-540-89197-0_114","volume-title":"PRICAI 2008: Trends in Artificial Intelligence","author":"X Zhang","year":"2008","unstructured":"Zhang, X., Cheng, W.: An improved Tabu search algorithm for 3D protein folding problem. In: Ho, T.-B., Zhou, Z.-H. (eds.) PRICAI 2008. LNCS (LNAI), vol. 5351, pp. 1104\u20131109. Springer, Heidelberg (2008)"},{"key":"38_CR32","doi-asserted-by":"crossref","first-page":"533","DOI":"10.1016\/0305-0548(86)90048-1","volume":"13","author":"F Glover","year":"1986","unstructured":"Glover, F.: Future paths for integer programming and links to artificial intelligence. Comput. Oper. Res. 13, 533\u2013549 (1986)","journal-title":"Comput. Oper. Res."},{"issue":"1","key":"38_CR33","doi-asserted-by":"crossref","first-page":"111","DOI":"10.1016\/0305-0548(93)E0023-M","volume":"22","author":"F Glover","year":"1995","unstructured":"Glover, F., Kelly, J.P., Laguna, M.: Genetic algorithms and tabu search: hybrids for optimization. Comput. Oper. Res. 22(1), 111\u2013134 (1995)","journal-title":"Comput. Oper. Res."},{"issue":"3","key":"38_CR34","first-page":"1","volume":"68","author":"HP Hsu","year":"2003","unstructured":"Hsu, H.P., Mehra, V., Grassberger, P.: Structure optimization in an off-lattice protein model. Phys. Rev. E 68(3), 1\u20134 (2003)","journal-title":"Phys. Rev. E"}],"container-title":["Lecture Notes in Computer Science","Trends in Applied Knowledge-Based Systems and Data Science"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-42007-3_38","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,4]],"date-time":"2025-06-04T00:52:20Z","timestamp":1748998340000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-319-42007-3_38"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016]]},"ISBN":["9783319420066","9783319420073"],"references-count":34,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-42007-3_38","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2016]]}}}