{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,6,4]],"date-time":"2025-06-04T04:18:02Z","timestamp":1749010682197,"version":"3.41.0"},"publisher-location":"Cham","reference-count":39,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319421100"},{"type":"electronic","value":"9783319421117"}],"license":[{"start":{"date-parts":[[2016,1,1]],"date-time":"2016-01-01T00:00:00Z","timestamp":1451606400000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2016]]},"DOI":"10.1007\/978-3-319-42111-7_25","type":"book-chapter","created":{"date-parts":[[2016,7,1]],"date-time":"2016-07-01T10:04:05Z","timestamp":1467367445000},"page":"322-331","source":"Crossref","is-referenced-by-count":2,"title":["Bacteria Foraging Optimization for Drug Design"],"prefix":"10.1007","author":[{"given":"Sally Chen Woon","family":"Peh","sequence":"first","affiliation":[]},{"given":"Jer Lang","family":"Hong","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2016,7,1]]},"reference":[{"key":"25_CR1","doi-asserted-by":"publisher","first-page":"23","DOI":"10.1038\/384023a0","volume":"384","author":"TL Blundell","year":"1996","unstructured":"Blundell, T.L.: Structure-based drug design. Nature 384, 23\u201326 (1996). doi: 10.1038\/384023a0","journal-title":"Nature"},{"key":"25_CR2","doi-asserted-by":"crossref","first-page":"727","DOI":"10.1006\/jmbi.1996.0897","volume":"207","author":"G Jones","year":"1997","unstructured":"Jones, G., Willette, P., Glen, R.C., Leach, A.R., Taylor, R.: J. Mol. Biol. 207, 727 (1997)","journal-title":"J. Mol. Biol."},{"key":"25_CR3","doi-asserted-by":"crossref","first-page":"3016","DOI":"10.3390\/ijms11083016","volume":"11","author":"SY Huang","year":"2010","unstructured":"Huang, S.Y., Zou, X.: Advances and challenges in protein-ligand docking. Int. J. Mol. Sci. 11, 3016\u20133034 (2010)","journal-title":"Int. J. Mol. Sci."},{"key":"25_CR4","doi-asserted-by":"crossref","first-page":"579","DOI":"10.1093\/bib\/bbp023","volume":"10","author":"CM Song","year":"2009","unstructured":"Song, C.M., Lim, S.J., Tong, J.C.: Recent advances in computer-aided drug design. Brief. Bioinform. 10, 579\u2013591 (2009)","journal-title":"Brief. Bioinform."},{"key":"25_CR5","doi-asserted-by":"crossref","first-page":"387","DOI":"10.1016\/S0022-2836(02)00811-2","volume":"323","author":"S Schmitt","year":"2002","unstructured":"Schmitt, S., Kuhn, D., Klebe, G.: A new method to detect related function among proteins independent of sequence and fold homology. J. Mol. Biol. 323, 387\u2013406 (2002)","journal-title":"J. Mol. Biol."},{"key":"25_CR6","first-page":"31","volume":"15","author":"J An","year":"2004","unstructured":"An, J., Totrov, M., Abagyan, R.: Comprehensive identification of \u201cDruggable\u201d protein ligand binding sites. Genome Inf. 15, 31\u201341 (2004)","journal-title":"Genome Inf."},{"issue":"3","key":"25_CR7","doi-asserted-by":"crossref","first-page":"412","DOI":"10.1002\/jcc.10384","volume":"25","author":"M Cecchini","year":"2003","unstructured":"Cecchini, M., Kolb, P., Majeux, N., et al.: Automated docking of highly flexible ligands by genetic algorithms: a critical assessment. J. Comput. Chem. 25(3), 412\u2013422 (2003)","journal-title":"J. Comput. Chem."},{"key":"25_CR8","doi-asserted-by":"crossref","first-page":"2644","DOI":"10.1002\/1521-3773(20020802)41:15<2644::AID-ANIE2644>3.0.CO;2-O","volume":"41","author":"H Gohlke","year":"2002","unstructured":"Gohlke, H., Klebe, G.: Approaches to the description and prediction of the binding affinity of small-molecule ligands to macromolecular receptors. Angew. Chem. Int. Ed. 41, 2644\u20132676 (2002)","journal-title":"Angew. Chem. Int. Ed."},{"key":"25_CR9","doi-asserted-by":"publisher","first-page":"445","DOI":"10.1007\/s10822-005-8483-7","volume":"19","author":"JRH Tame","year":"2005","unstructured":"Tame, J.R.H.: Scoring functions\u2013the first 100 years. J. Comput. Aided Mol. Des. 19, 445\u2013451 (2005). doi: 10.1007\/s10822-005-8483-7","journal-title":"J. Comput. Aided Mol. Des."},{"key":"25_CR10","doi-asserted-by":"crossref","first-page":"516","DOI":"10.1016\/S0167-7799(00)89015-0","volume":"13","author":"P Willett","year":"1995","unstructured":"Willett, P.: Genetic algorithms in molecular recognition and design. Trends Biotechnol. 13, 516\u2013521 (1995)","journal-title":"Trends Biotechnol."},{"issue":"3","key":"25_CR11","doi-asserted-by":"crossref","first-page":"727","DOI":"10.1006\/jmbi.1996.0897","volume":"267","author":"G Jones","year":"1997","unstructured":"Jones, G., Willett, P., Glen, R.C., et al.: Development and validation of a genetic algorithm for flexible docking. J. Mol. Biol. 267(3), 727\u2013748 (1997)","journal-title":"J. Mol. Biol."},{"key":"25_CR12","doi-asserted-by":"crossref","unstructured":"Ross, B.J.: A Lamarckian evolution strategy for genetic algorithms. In: The Practical Handbook of Genetic Algorithms, p. 16. CRC Press, Boca Raton (1999)","DOI":"10.1201\/9781420050080.ch1"},{"key":"25_CR13","doi-asserted-by":"publisher","first-page":"379","DOI":"10.1016\/j.asoc.2014.10.049","volume":"28","author":"E L\u00f3pez-Camacho","year":"2015","unstructured":"L\u00f3pez-Camacho, E., Garc\u00eda Godoy, M.J., Garc\u00eda-Nieto, J., et al.: Solving molecular flexible docking problems with metaheuristics: a comparative study. Appl. Soft Comput. 28, 379\u2013393 (2015). doi: 10.1016\/j.asoc.2014.10.049","journal-title":"Appl. Soft Comput."},{"key":"25_CR14","doi-asserted-by":"crossref","first-page":"10","DOI":"10.1214\/ss\/1177011077","volume":"8","author":"D Bertsimas","year":"1993","unstructured":"Bertsimas, D., Tsitsiklis, J.: Simulated annealing. Stat. Sci. 8, 10\u201315 (1993)","journal-title":"Stat. Sci."},{"key":"25_CR15","doi-asserted-by":"publisher","first-page":"19","DOI":"10.1109\/101.17235","volume":"5","author":"RA Rutenbar","year":"1989","unstructured":"Rutenbar, R.A.: Simulated annealing algorithms: an overview. IEEE Circuits Devices Mag. 5, 19\u201326 (1989). doi: 10.1109\/101.17235","journal-title":"IEEE Circuits Devices Mag."},{"key":"25_CR16","doi-asserted-by":"crossref","first-page":"1143","DOI":"10.1057\/palgrave.jors.2602068","volume":"10","author":"B Suman","year":"2006","unstructured":"Suman, B., Kumar, P.: A survey of simulated annealing as a tool for single and multiobjective optimization. J. Oper. Res. Soc. 10, 1143 (2006)","journal-title":"J. Oper. Res. Soc."},{"issue":"5","key":"25_CR17","doi-asserted-by":"crossref","first-page":"435","DOI":"10.1023\/A:1008005918983","volume":"13","author":"M Liu","year":"1999","unstructured":"Liu, M., Wang, S.: MCDOCK: a Monte Carlo simulation approach to the molecular docking problem. J. Comput. Aided Mol. Des. 13(5), 435\u2013451 (1999)","journal-title":"J. Comput. Aided Mol. Des."},{"key":"25_CR18","doi-asserted-by":"publisher","first-page":"1739","DOI":"10.1021\/jm0306430","volume":"47","author":"RA Friesner","year":"2004","unstructured":"Friesner, R.A., Banks, J.L., Murphy, R.B., et al.: Glide: a new approach for rapid, accurate docking and scoring. 1. method and assessment of docking accuracy. J. Med. Chem. 47, 1739\u20131749 (2004). doi: 10.1021\/jm0306430","journal-title":"J. Med. Chem."},{"key":"25_CR19","doi-asserted-by":"publisher","first-page":"29","DOI":"10.1109\/3477.484436","volume":"26","author":"M Dorigo","year":"1996","unstructured":"Dorigo, M., Maniezzo, V., Colorni, A.: Ant system: optimization by a colony of cooperating agents. IEEE Trans. Syst. Man Cybern. Part B 26, 29\u201341 (1996). doi: 10.1109\/3477.484436","journal-title":"IEEE Trans. Syst. Man Cybern. Part B"},{"key":"25_CR20","doi-asserted-by":"crossref","first-page":"1942","DOI":"10.1109\/ICNN.1995.488968","volume":"4","author":"J Kennedy","year":"1995","unstructured":"Kennedy, J., Eberhart, R.C.: Particle swarm optimization. IEEE Int. Conf. Neural Netw. (ICNN) 4, 1942\u20131948 (1995)","journal-title":"IEEE Int. Conf. Neural Netw. (ICNN)"},{"key":"25_CR21","doi-asserted-by":"crossref","unstructured":"Kennedy, J.: Small worlds and megaminds: effects of neighborhood topology on particle swarm performance. In: Conference on Evolutionary Computation, pp. 1931\u20131938 (1999)","DOI":"10.1109\/CEC.1999.785509"},{"key":"25_CR22","doi-asserted-by":"publisher","unstructured":"Ghosh, A., Ghosh, A., Chowdhury, A., Hazra, J.: An evolutionary approach to drug-design using quantam binary particle swarm optimization algorithm. In: 2012 IEEE Students\u2019 Conference on Electrical, Electronics and Computer Science, pp. 1\u20134 (2012). doi: 10.1109\/SCEECS.2012.6184776","DOI":"10.1109\/SCEECS.2012.6184776"},{"key":"25_CR23","doi-asserted-by":"publisher","first-page":"67","DOI":"10.1002\/jcc.23108","volume":"34","author":"Y Liu","year":"2013","unstructured":"Liu, Y., Zhao, L., Li, W., Yang, Y.L.: FIPSDock: a new molecular docking technique driven by fully informed swarm optimization algorithm. J. Comput. Chem. 34, 67\u201375 (2013). doi: 10.1002\/jcc.23108","journal-title":"J. Comput. Chem."},{"key":"25_CR24","doi-asserted-by":"publisher","first-page":"64","DOI":"10.1063\/1.1897527","volume":"58","author":"HC Berg","year":"2005","unstructured":"Berg, H.C., Berry, R.M.: E.coli in motion. Phys. Today 58, 64\u201365 (2005). doi: 10.1063\/1.1897527","journal-title":"Phys. Today"},{"key":"25_CR25","doi-asserted-by":"publisher","first-page":"2635","DOI":"10.1073\/pnas.1019199108","volume":"108","author":"R Stocker","year":"2009","unstructured":"Stocker, R.: Reverse and flick: hybrid locomotion in bacteria. PNAS 108, 2635\u20132636 (2009). doi: 10.1073\/pnas.1019199108","journal-title":"PNAS"},{"key":"25_CR26","doi-asserted-by":"publisher","first-page":"487","DOI":"10.1126\/science.1172667","volume":"325","author":"M Polin","year":"2009","unstructured":"Polin, M., Tuval, I., Drescher, K., Gollub, J.P., Goldstein, R.E.: Chlamydomonas swims with two \u201cGears\u201d in a eukaryotic version of run-and-tumble locomotion. Science 325, 487\u20134890 (2009). doi: 10.1126\/science.1172667","journal-title":"Science"},{"key":"25_CR27","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1001004","author":"MD Egbert","year":"2010","unstructured":"Egbert, M.D., Barandiaran, X.E., di Paolo, E.A.: A minimal model of metabolism-based chemotaxis. PLoS Comput. Biol. (2010). doi: 10.1371\/journal.pcbi.1001004","journal-title":"PLoS Comput. Biol."},{"key":"25_CR28","doi-asserted-by":"publisher","first-page":"1","DOI":"10.4018\/jsir.2010010101","volume":"1","author":"KM Passino","year":"2010","unstructured":"Passino, K.M.: Bacterial foraging optimization. Int. J. Swarm Intell. Res. 1, 1\u201316 (2010). doi: 10.4018\/jsir.2010010101","journal-title":"Int. J. Swarm Intell. Res."},{"key":"25_CR29","doi-asserted-by":"publisher","first-page":"8987","DOI":"10.1073\/pnas.83.23.8987","volume":"83","author":"JE Segall","year":"1986","unstructured":"Segall, J.E., Block, S.M., Berg, H.C.: Temporal comparisons in bacterial chemotaxis. Proc. Natl. Acad. Sci. USA 83, 8987\u20138991 (1986). doi: 10.1073\/pnas.83.23.8987","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"25_CR30","volume-title":"Brock Microbiology","author":"MT Madigan","year":"2012","unstructured":"Madigan, M.T., Martinko, J.M., Stahl, D.A., Clark, D.P.: Brock Microbiology, 13th edn. Pearson, Glenview (2012)","edition":"13"},{"key":"25_CR31","doi-asserted-by":"publisher","first-page":"3259","DOI":"10.1128\/JB.00083-10","volume":"192","author":"L Turner","year":"2010","unstructured":"Turner, L., Zhang, R., Darnton, N.C., Berg, H.C.: Visualization of flagella during bacterial swarming. J. Bacteriol. 192, 3259\u20133267 (2010). doi: 10.1128\/JB.00083-10","journal-title":"J. Bacteriol."},{"key":"25_CR32","doi-asserted-by":"publisher","first-page":"2082","DOI":"10.1016\/j.bpj.2010.01.053","volume":"98","author":"NC Damton","year":"2010","unstructured":"Damton, N.C., Turner, L., Rojevsky, S., Berg, H.C.: Dynamics of bacterial swarming. Biophys. J. 98, 2082\u20132090 (2010). doi: 10.1016\/j.bpj.2010.01.053","journal-title":"Biophys. J."},{"issue":"3","key":"25_CR33","doi-asserted-by":"publisher","first-page":"23","DOI":"10.1007\/978-3-642-01085-9_2","volume":"3","author":"S Das","year":"2009","unstructured":"Das, S., Biswas, A., Dasgupta, S., Abraham, A.: Bacterial foraging optimization algorithm: theoretical foundations, analysis, and applications. Found. Comput. Intell. 3(3), 23\u201355 (2009). doi: 10.1007\/978-3-642-01085-9_2","journal-title":"Found. Comput. Intell."},{"key":"25_CR34","doi-asserted-by":"publisher","first-page":"0295","DOI":"10.1371\/journal.pbio.0030045","volume":"3","author":"EJ Stewart","year":"2005","unstructured":"Stewart, E.J., Madden, R., Paul, G., Taddei, F.: Aging and death in an organism that reproduces by morphologically symmetric division. PLoS Biol. 3, 0295\u20130300 (2005). doi: 10.1371\/journal.pbio.0030045","journal-title":"PLoS Biol."},{"key":"25_CR35","doi-asserted-by":"publisher","first-page":"52","DOI":"10.1109\/MCS.2002.1004010","volume":"22","author":"KM Passino","year":"2010","unstructured":"Passino, K.M.: Biomimicry of bacterial foraging for distributed optimization and control. IEEE Control Syst. Mag. 22, 52\u201367 (2010). doi: 10.1109\/MCS.2002.1004010","journal-title":"IEEE Control Syst. Mag."},{"key":"25_CR36","volume-title":"Biomimicry for Optimization, Control and Automation","author":"KM Passino","year":"2004","unstructured":"Passino, K.M.: Biomimicry for Optimization, Control and Automation. Springer-Verlag, London (2004)"},{"key":"25_CR37","series-title":"Advances in Soft Computing","doi-asserted-by":"publisher","first-page":"255","DOI":"10.1007\/978-3-540-74972-1_34","volume-title":"Innovations in Hybrid Intelligent Systems","author":"A Biswas","year":"2008","unstructured":"Biswas, A., Dasgupta, S., Das, S., Abraham, A.: Synergy of PSO and bacterial foraging optimization-a comparative study on numerical benchmarks. In: Corchado, E., Corchado, J.M., Abraham, A. (eds.) Innovations in Hybrid Intelligent Systems. Advances in Soft Computing, vol. 44, pp. 255\u2013263. Springer, Heidelberg (2008). doi: 10.1007\/978-3-540-74972-1_34"},{"key":"25_CR38","doi-asserted-by":"publisher","unstructured":"Shen, H., Zhu, Y., Zhou, X., Guo, H., Chang, C.: Bacterial foraging optimization algorithm with particle swarm optimization strategy for global numerical optimization, pp. 497\u2013504. ACM (2009). doi: 10.1145\/1543834.1543901","DOI":"10.1145\/1543834.1543901"},{"key":"25_CR39","unstructured":"Sharma, V., Pattnaik, S.S., Garg, T.: A review of bacterial foraging optimization and its applications. In: IJCA, pp. 9\u201312 (2012)"}],"container-title":["Lecture Notes in Computer Science","Computational Science and Its Applications -- ICCSA 2016"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-42111-7_25","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,3]],"date-time":"2025-06-03T23:32:15Z","timestamp":1748993535000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-319-42111-7_25"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016]]},"ISBN":["9783319421100","9783319421117"],"references-count":39,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-42111-7_25","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2016]]}}}