{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,6,10]],"date-time":"2025-06-10T20:40:01Z","timestamp":1749588001710,"version":"3.41.0"},"publisher-location":"Cham","reference-count":19,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319463483"},{"type":"electronic","value":"9783319463490"}],"license":[{"start":{"date-parts":[[2016,1,1]],"date-time":"2016-01-01T00:00:00Z","timestamp":1451606400000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2016]]},"DOI":"10.1007\/978-3-319-46349-0_17","type":"book-chapter","created":{"date-parts":[[2016,9,20]],"date-time":"2016-09-20T05:31:28Z","timestamp":1474349488000},"page":"192-203","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":3,"title":["Weakly-Supervised Symptom Recognition for Rare Diseases in Biomedical Text"],"prefix":"10.1007","author":[{"given":"Pierre","family":"Holat","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Nadi","family":"Tomeh","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Thierry","family":"Charnois","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Delphine","family":"Battistelli","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Marie-Christine","family":"Jaulent","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jean-Philippe","family":"M\u00e9tivier","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2016,9,21]]},"reference":[{"key":"17_CR1","doi-asserted-by":"crossref","unstructured":"Agrawal, R., Srikant, R.: Mining sequential patterns. In: Proceedings of the Eleventh International Conference on Data Engineering, pp. 3\u201314 (1995)","DOI":"10.1109\/ICDE.1995.380415"},{"key":"17_CR2","doi-asserted-by":"crossref","unstructured":"B\u00e9chet, N., Cellier, P., Charnois, T., Cr\u00e9milleux, B.: Sequence mining under multiple constraints. In: Proceedings of the 30th Annual ACM Symposium on Applied Computing, pp. 908\u2013914 (2015)","DOI":"10.1145\/2695664.2695889"},{"key":"17_CR3","unstructured":"Cohen, K.B.: BioNLP: biomedical text mining. In: Handbook of Natural Language Processing, 2nd edn. (2010)"},{"key":"17_CR4","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/j.jbi.2013.12.006","volume":"47","author":"RI Do\u011fan","year":"2014","unstructured":"Do\u011fan, R.I., Leaman, R., Lu, Z.: NCBI disease corpus: a resource for disease name recognition and concept normalization. J. Biomed. Inf. 47, 1\u201310 (2014)","journal-title":"J. Biomed. Inf."},{"key":"17_CR5","doi-asserted-by":"crossref","unstructured":"Finkel, J.R., Grenager, T., Manning, C.: Incorporating non-local information into information extraction systems by gibbs sampling. In: Proceedings of the 43rd Annual Meeting on Association for Computational Linguistics, pp. 363\u2013370 (2005)","DOI":"10.3115\/1219840.1219885"},{"issue":"2\u20133","key":"17_CR6","doi-asserted-by":"publisher","first-page":"146","DOI":"10.1080\/00437956.1954.11659520","volume":"10","author":"ZS Harris","year":"1954","unstructured":"Harris, Z.S.: Distributional structure. Word 10(2\u20133), 146\u2013162 (1954)","journal-title":"Word"},{"key":"17_CR7","unstructured":"Kokkinakis, D.: Developing resources for swedish bio-medical text mining. In: Proceedings of the 2nd International Symposium on Semantic Mining in Biomedicine (SMBM) (2006)"},{"key":"17_CR8","unstructured":"Lafferty, J., McCallum, A., Pereira, F.C.: Conditional random fields: probabilistic models for segmenting and labeling sequence data (2001)"},{"key":"17_CR9","unstructured":"Leaman, R., Miller, C., Gonzalez, G.: Enabling recognition of diseases in biomedical text with machine learning: corpus and benchmark. In: Proceedings of the 2009 Symposium on Languages in Biology and Medicine, vol. 82(9) (2009)"},{"key":"17_CR10","doi-asserted-by":"crossref","unstructured":"Martin, L., Battistelli, D., Charnois, T.: Symptom extraction issue. In: Proceedings of BioNLP 2014, pp. 107\u2013111 (2014)","DOI":"10.3115\/v1\/W14-3416"},{"key":"17_CR11","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"249","DOI":"10.1007\/978-3-319-19551-3_33","volume-title":"Artificial Intelligence in Medicine","author":"JP M\u00e9tivier","year":"2015","unstructured":"M\u00e9tivier, J.P., Serrano, L., Charnois, T., Cuissart, B., Widl\u00f6cher, A.: Automatic symptom extraction from texts to enhance knowledge discovery on rare diseases. In: Holmes, J.H., Bellazzi, R., Sacchi, L., Peek, N. (eds.) Artificial Intelligence in Medicine. LNCS, vol. 9105, pp. 249\u2013254. Springer, Heidelberg (2015). doi: 10.1007\/978-3-319-19551-3_33"},{"key":"17_CR12","unstructured":"Mikolov, T., Chen, K., Corrado, G., Dean, J.: Efficient estimation of word representations in vector space. arXiv preprint arXiv:1301.3781 (2013)"},{"key":"17_CR13","unstructured":"Mikolov, T., Sutskever, I., Chen, K., Corrado, G.S., Dean, J.: Distributed representations of words and phrases and their compositionality. In: Advances in Neural Information Processing Systems, pp. 3111\u20133119 (2013)"},{"issue":"2","key":"17_CR14","doi-asserted-by":"publisher","first-page":"133","DOI":"10.1007\/s10844-006-0006-z","volume":"28","author":"J Pei","year":"2007","unstructured":"Pei, J., Han, J., Wang, W.: Constraint-based sequential pattern mining: the pattern-growth methods. J. Intell. Inf. Syst. 28(2), 133\u2013160 (2007)","journal-title":"J. Intell. Inf. Syst."},{"issue":"5","key":"17_CR15","doi-asserted-by":"publisher","first-page":"507","DOI":"10.1136\/jamia.2009.001560","volume":"17","author":"GK Savova","year":"2010","unstructured":"Savova, G.K., Masanz, J.J., Ogren, P.V., Zheng, J., Sohn, S., Kipper-Schuler, K.C., Chute, C.G.: Mayo clinical text analysis and knowledge extraction system (ctakes): architecture, component evaluation and applications. J. Am. Med. Inf. Assoc. 17(5), 507\u2013513 (2010)","journal-title":"J. Am. Med. Inf. Assoc."},{"issue":"9","key":"17_CR16","first-page":"1","volume":"10","author":"BR South","year":"2009","unstructured":"South, B.R., Shen, S., Jones, M., Garvin, J., Samore, M.H., Chapman, W.W., Gundlapalli, A.V.: Developing a manually annotated clinical document corpus to identify phenotypic information for inflammatory bowel disease. BMC Bioinform. 10(9), 1 (2009)","journal-title":"BMC Bioinform."},{"key":"17_CR17","doi-asserted-by":"crossref","unstructured":"Srikant, R., Agrawal, R.: Mining sequential patterns: generalizations and performance improvements. In: Proceedings of the 5th International Conference on Extending Database Technology: Advances in Database Technology, pp. 3\u201317 (1996)","DOI":"10.1007\/BFb0014140"},{"issue":"5","key":"17_CR18","doi-asserted-by":"publisher","first-page":"552","DOI":"10.1136\/amiajnl-2011-000203","volume":"18","author":"\u00d6 Uzuner","year":"2011","unstructured":"Uzuner, \u00d6., South, B.R., Shen, S., DuVall, S.L.: 2010 i2b2\/va challenge on concepts, assertions, and relations in clinical text. J. Am. Med. Inf. Assoc. 18(5), 552\u2013556 (2011)","journal-title":"J. Am. Med. Inf. Assoc."},{"issue":"1","key":"17_CR19","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/2041-1480-4-3","volume":"4","author":"KB Wagholikar","year":"2013","unstructured":"Wagholikar, K.B., Torii, M., Jonnalagadda, S.R., Liu, H.: Pooling annotated corpora for clinical concept extraction. J. Biomed. Semant. 4(1), 1\u201310 (2013)","journal-title":"J. Biomed. Semant."}],"container-title":["Lecture Notes in Computer Science","Advances in Intelligent Data Analysis XV"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-46349-0_17","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,10]],"date-time":"2025-06-10T20:11:09Z","timestamp":1749586269000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-319-46349-0_17"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016]]},"ISBN":["9783319463483","9783319463490"],"references-count":19,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-46349-0_17","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2016]]},"assertion":[{"value":"21 September 2016","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}},{"value":"IDA","order":1,"name":"conference_acronym","label":"Conference Acronym","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"International Symposium on Intelligent Data Analysis","order":2,"name":"conference_name","label":"Conference Name","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Stockholm","order":3,"name":"conference_city","label":"Conference City","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Sweden","order":4,"name":"conference_country","label":"Conference Country","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2016","order":5,"name":"conference_year","label":"Conference Year","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"13 October 2016","order":7,"name":"conference_start_date","label":"Conference Start Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"15 October 2016","order":8,"name":"conference_end_date","label":"Conference End Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"15","order":9,"name":"conference_number","label":"Conference Number","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"ida2016","order":10,"name":"conference_id","label":"Conference ID","group":{"name":"ConferenceInfo","label":"Conference Information"}}]}}