{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,6,9]],"date-time":"2025-06-09T14:27:05Z","timestamp":1749479225512},"publisher-location":"Cham","reference-count":16,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319463483"},{"type":"electronic","value":"9783319463490"}],"license":[{"start":{"date-parts":[[2016,1,1]],"date-time":"2016-01-01T00:00:00Z","timestamp":1451606400000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2016]]},"DOI":"10.1007\/978-3-319-46349-0_18","type":"book-chapter","created":{"date-parts":[[2016,9,20]],"date-time":"2016-09-20T01:31:28Z","timestamp":1474335088000},"page":"204-214","source":"Crossref","is-referenced-by-count":5,"title":["Estimating Sequence Similarity from Read Sets for Clustering Sequencing Data"],"prefix":"10.1007","author":[{"given":"Petr","family":"Ry\u0161av\u00fd","sequence":"first","affiliation":[]},{"given":"Filip","family":"\u017delezn\u00fd","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2016,9,21]]},"reference":[{"issue":"18","key":"18_CR1","doi-asserted-by":"crossref","first-page":"2502","DOI":"10.1093\/bioinformatics\/btr447","volume":"27","author":"E Bao","year":"2011","unstructured":"Bao, E., Jiang, T., Kaloshian, I., Girke, T.: Seed: efficient clustering of next-generation sequences. Bioinformatics 27(18), 2502\u20132509 (2011)","journal-title":"Bioinformatics"},{"issue":"383","key":"18_CR2","doi-asserted-by":"crossref","first-page":"553","DOI":"10.1080\/01621459.1983.10478008","volume":"78","author":"EB Fowlkes","year":"1983","unstructured":"Fowlkes, E.B., Mallows, C.L.: A method for comparing two hierarchical clusterings. J. Am. Stat. Assoc. 78(383), 553\u2013569 (1983)","journal-title":"J. Am. Stat. Assoc."},{"issue":"5","key":"18_CR3","doi-asserted-by":"crossref","first-page":"802","DOI":"10.1101\/gr.072033.107","volume":"18","author":"D Hernandez","year":"2008","unstructured":"Hernandez, D., et al.: De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer. Genome Res. 18(5), 802\u2013809 (2008)","journal-title":"Genome Res."},{"key":"18_CR4","unstructured":"Jalovec, K., \u017delezn\u00fd, F.: Binary classification of metagenomic samples using discriminative dna superstrings. In: 8th International Workshop on Machine Learning in Systems Biology, MLSB 2014 (2014)"},{"issue":"7333","key":"18_CR5","doi-asserted-by":"crossref","first-page":"187","DOI":"10.1038\/nature09792","volume":"470","author":"E Lander","year":"2011","unstructured":"Lander, E.: Initial impact of the sequencing of the human genome. Nature 470(7333), 187\u2013197 (2011)","journal-title":"Nature"},{"issue":"8","key":"18_CR6","first-page":"707","volume":"10","author":"VI Levenshtein","year":"1966","unstructured":"Levenshtein, V.I.: Binary codes capable of correcting deletions, insertions, and reversals. Sov. Phys. Dokl. 10(8), 707\u2013710 (1966)","journal-title":"Sov. Phys. Dokl."},{"key":"18_CR7","unstructured":"Malhotra, R., Elleder, D., Bao, L., Hunter, D.R., Acharya, R., Poss, M.: Clustering pipeline for determining consensus sequences in targeted next-generation sequencing. arXiv (Conrell University Library) arXiv:1410.1608 (2016)"},{"key":"18_CR8","unstructured":"Monge, A.E., Elkan, C.P.: The webfind tool for finding scientific papers over the worldwide web. In: Proceedings of the 3rd International Congress on Computer Science Research (1996)"},{"issue":"3","key":"18_CR9","doi-asserted-by":"crossref","first-page":"443","DOI":"10.1016\/0022-2836(70)90057-4","volume":"48","author":"SB Needleman","year":"1970","unstructured":"Needleman, S.B., Wunsch, C.D.: A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol. 48(3), 443\u2013453 (1970)","journal-title":"J. Mol. Biol."},{"issue":"4","key":"18_CR10","first-page":"406","volume":"4","author":"N Saitou","year":"1987","unstructured":"Saitou, N., Nei, M.: The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4(4), 406\u2013425 (1987)","journal-title":"Mol. Biol. Evol."},{"issue":"6","key":"18_CR11","doi-asserted-by":"crossref","first-page":"1117","DOI":"10.1101\/gr.089532.108","volume":"9","author":"JT Simpson","year":"2009","unstructured":"Simpson, J.T., et al.: ABySS: a parallel assembler for short read sequence data. Genome Res. 9(6), 1117\u20131123 (2009)","journal-title":"Genome Res."},{"key":"18_CR12","first-page":"1409","volume":"38","author":"RR Sokal","year":"1958","unstructured":"Sokal, R.R., Michener, C.D.: A statistical method for evaluating systematic relationships. Univ. Kansas Sci. Bull. 38, 1409\u20131438 (1958)","journal-title":"Univ. Kansas Sci. Bull."},{"key":"18_CR13","unstructured":"\u017delezn\u00fd, F., Jalovec, K., Tolar, J.: Learning meets sequencing: a generality framework for read-sets. In: 24th International Conference on Inductive Logic Programming, Late-Breaking Papers, ILP 2014 (2014)"},{"issue":"1","key":"18_CR14","doi-asserted-by":"crossref","first-page":"168","DOI":"10.1145\/321796.321811","volume":"21","author":"RA Wagner","year":"1974","unstructured":"Wagner, R.A., Fischer, M.J.: The string-to-string correction problem. J. ACM 21(1), 168\u2013173 (1974). http:\/\/doi.acm.org\/10.1145\/321796.321811","journal-title":"J. ACM"},{"issue":"4","key":"18_CR15","doi-asserted-by":"crossref","first-page":"500","DOI":"10.1093\/bioinformatics\/btl629","volume":"23","author":"RL Warren","year":"2007","unstructured":"Warren, R.L., et al.: Assembling millions of short DNA sequences using SSAKE. Bioinformatics 23(4), 500\u2013501 (2007)","journal-title":"Bioinformatics"},{"issue":"1","key":"18_CR16","doi-asserted-by":"crossref","first-page":"869","DOI":"10.1186\/1756-0500-7-869","volume":"7","author":"E Weitschek","year":"2014","unstructured":"Weitschek, E., Santoni, D., Fiscon, G., Cola, M.C.D., Bertolazzi, P., Felici, G.: Next generation sequencing reads comparison with an alignment-free distance. BMC Res. Notes 7(1), 869 (2014)","journal-title":"BMC Res. Notes"}],"container-title":["Lecture Notes in Computer Science","Advances in Intelligent Data Analysis XV"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-46349-0_18","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2017,6,24]],"date-time":"2017-06-24T19:12:34Z","timestamp":1498331554000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-319-46349-0_18"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016]]},"ISBN":["9783319463483","9783319463490"],"references-count":16,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-46349-0_18","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2016]]}}}