{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,6,13]],"date-time":"2025-06-13T04:10:44Z","timestamp":1749787844196,"version":"3.41.0"},"publisher-location":"Cham","reference-count":28,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319489582"},{"type":"electronic","value":"9783319489599"}],"license":[{"start":{"date-parts":[[2016,1,1]],"date-time":"2016-01-01T00:00:00Z","timestamp":1451606400000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2016]]},"DOI":"10.1007\/978-3-319-48959-9_11","type":"book-chapter","created":{"date-parts":[[2016,11,30]],"date-time":"2016-11-30T14:17:29Z","timestamp":1480515449000},"page":"116-127","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":4,"title":["Analysis of Next-Generation Sequencing Data of miRNA for the Prediction of Breast Cancer"],"prefix":"10.1007","author":[{"given":"Indrajit","family":"Saha","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Shib Sankar","family":"Bhowmick","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Filippo","family":"Geraci","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Marco","family":"Pellegrini","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Debotosh","family":"Bhattacharjee","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ujjwal","family":"Maulik","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Dariusz","family":"Plewczynski","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2016,12,1]]},"reference":[{"issue":"8","key":"11_CR1","doi-asserted-by":"publisher","first-page":"e11","DOI":"10.1038\/jid.2013.248","volume":"133","author":"A Grada","year":"2013","unstructured":"Grada, A., Weinbrecht, K.: Next-generation sequencing: methodology and application. J. Invest. Dermatol. 133(8), e11 (2013)","journal-title":"J. Invest. Dermatol."},{"issue":"44","key":"11_CR2","doi-asserted-by":"publisher","first-page":"29897","DOI":"10.1074\/jbc.M804612200","volume":"283","author":"T Miller","year":"2008","unstructured":"Miller, T., Ghoshal, K., Ramaswamy, B., Roy, S., Datta, J., Shapiro, C., Jacob, S., Majumder, S.: MicroRNA-221\/222 confers tamoxifen resistance in breast cancer by targeting p27Kip1. J. Biol. Chem. 283(44), 29897\u201329903 (2008)","journal-title":"J. Biol. Chem."},{"key":"11_CR3","doi-asserted-by":"publisher","first-page":"215","DOI":"10.1016\/j.cell.2009.01.002","volume":"136","author":"D Bartel","year":"2009","unstructured":"Bartel, D.: MicroRNAs: target recognition and regulatory functions. Cell 136, 215\u2013233 (2009)","journal-title":"Cell"},{"issue":"11","key":"11_CR4","doi-asserted-by":"publisher","first-page":"1325","DOI":"10.1038\/nsmb.2678","volume":"20","author":"A Jacobsen","year":"2013","unstructured":"Jacobsen, A., Silber, J., Harinath, G., Huse, J., Schultz, N., Sander, C.: Analysis of microRNA-target interactions across diverse cancer types. Nat. Struct. Mol. Biol. 20(11), 1325\u20131332 (2013)","journal-title":"Nat. Struct. Mol. Biol."},{"issue":"1","key":"11_CR5","doi-asserted-by":"publisher","first-page":"97","DOI":"10.1186\/1471-2164-12-97","volume":"12","author":"C Bang-Berthelsen","year":"2011","unstructured":"Bang-Berthelsen, C., Pedersen, L., Fl\u00f8yel, T., Hagedorn, P., Gylvin, T., Pociot, F.: Independent component and pathway-based analysis of miRNA-regulated gene expression in a model of type 1 diabetes. BMC Genomics 12(1), 97 (2011)","journal-title":"BMC Genomics"},{"issue":"1","key":"11_CR6","doi-asserted-by":"publisher","first-page":"257","DOI":"10.1186\/1471-2334-13-257","volume":"13","author":"H Song","year":"2013","unstructured":"Song, H., Wang, Q., Guo, Y., Liu, S., Song, R., Gao, X., Dai, L., Li, B., Zhang, D., Cheng, J.: Microarray analysis of microRNA expression in peripheral blood mononuclear cells of critically ill patients with influenza A (H1N1). BMC Infect. Dis. 13(1), 257 (2013)","journal-title":"BMC Infect. Dis."},{"issue":"4","key":"11_CR7","first-page":"450","volume":"5","author":"J Hunsberger","year":"2013","unstructured":"Hunsberger, J., Fessler, E., Chibane, F., Leng, Y., Maric, D., Elkahloun, A., Chuang, D.: Mood stabilizer-regulated miRNAs in neuropsychiatric and neurodegenerative diseases: identifying associations and functions. Am. J. Transl. Res. 5(4), 450\u2013464 (2013)","journal-title":"Am. J. Transl. Res."},{"issue":"3","key":"11_CR8","doi-asserted-by":"publisher","first-page":"241","DOI":"10.1261\/rna.7240905","volume":"11","author":"S Baskerville","year":"2005","unstructured":"Baskerville, S., Bartel, D.: Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes. RNA 11(3), 241\u2013247 (2005)","journal-title":"RNA"},{"issue":"10a","key":"11_CR9","doi-asserted-by":"publisher","first-page":"1902","DOI":"10.1101\/gr.2722704","volume":"14","author":"A Rodriguez","year":"2004","unstructured":"Rodriguez, A., Griffiths-Jones, S., Ashurst, J., Bradley, A.: Identification of mammalian microRNA host genes and transcription units. Genome Res. 14(10a), 1902\u20131910 (2004)","journal-title":"Genome Res."},{"key":"11_CR10","doi-asserted-by":"publisher","first-page":"e188","DOI":"10.1093\/nar\/gnh186","volume":"32","author":"Y Sun","year":"2004","unstructured":"Sun, Y., Koo, S., White, N., Peralta, E., Esau, C., Dean, N., Perera, R.: Development of a micro-array to detect human and mouse microRNAs and characterization of expression in human organs. Nucleic Acids Res. 32, e188 (2004)","journal-title":"Nucleic Acids Res."},{"issue":"1","key":"11_CR11","doi-asserted-by":"publisher","first-page":"91","DOI":"10.1016\/j.molcel.2007.06.017","volume":"27","author":"A Grimson","year":"2007","unstructured":"Grimson, A., Farh, K., Johnston, W., Garrett-Engele, P., Lim, L., Bartel, D.: MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Mol. Cell 27(1), 91\u2013105 (2007)","journal-title":"Mol. Cell"},{"issue":"13","key":"11_CR12","doi-asserted-by":"publisher","first-page":"2232","DOI":"10.1016\/j.ins.2009.03.004","volume":"179","author":"E Rashedi","year":"2009","unstructured":"Rashedi, E., Nezamabadi-Pour, H., Saryazdi, S.: GSA: a gravitational search algorithm. Inf. Sci. 179(13), 2232\u20132248 (2009)","journal-title":"Inf. Sci."},{"key":"11_CR13","doi-asserted-by":"crossref","unstructured":"Boser, B.E., Guyon, I.M., Vapnik, N.V.: A training algorithm for optimal margin classifiers. In: Proceedings of the 5th Annual Workshop on Computational Learning Theory, pp. 144\u2013152 (1992)","DOI":"10.1145\/130385.130401"},{"key":"11_CR14","doi-asserted-by":"publisher","first-page":"531","DOI":"10.1126\/science.286.5439.531","volume":"286","author":"TR Golub","year":"1999","unstructured":"Golub, T.R., Slonim, D.K., Tamayo, P., Huard, C., Gassenbeek, M., Mesirov, J.P., Coller, H., Loh, M.L., Downing, J.R., Caligiuri, M.A., Bloomeld, D.D., Lander, E.S.: Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 286, 531\u2013537 (1999)","journal-title":"Science"},{"key":"11_CR15","volume-title":"Mathematical Statistics: Basic Ideas and Selected Topics","author":"PJ Bickel","year":"1977","unstructured":"Bickel, P.J., Doksum, K.A.: Mathematical Statistics: Basic Ideas and Selected Topics. Holden-Day, San Francisco (1977)"},{"key":"11_CR16","volume-title":"Nonparametric Statistical Methods","author":"M Hollander","year":"1999","unstructured":"Hollander, M., Wolfe, D.A.: Nonparametric Statistical Methods, vol. 2. Wiley, New York (1999)"},{"key":"11_CR17","unstructured":"Yang, H., Moody, J.: Feature selection based on joint mutual information. In: Proceedings of the International Symposium on Advances in Intelligent Data Analysis, pp. 22\u201325 (1999)"},{"issue":"8","key":"11_CR18","doi-asserted-by":"publisher","first-page":"1226","DOI":"10.1109\/TPAMI.2005.159","volume":"27","author":"H Peng","year":"2005","unstructured":"Peng, H., Long, F., Ding, C.: Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy. IEEE Trans. Pattern Anal. Mach. Intell. 27(8), 1226\u20131238 (2005)","journal-title":"IEEE Trans. Pattern Anal. Mach. Intell."},{"issue":"4","key":"11_CR19","doi-asserted-by":"publisher","first-page":"537","DOI":"10.1109\/72.298224","volume":"5","author":"R Battiti","year":"1994","unstructured":"Battiti, R.: Using mutual information for selecting features in supervised neural net learning. IEEE Trans. Neural Networks 5(4), 537\u2013550 (1994)","journal-title":"IEEE Trans. Neural Networks"},{"key":"11_CR20","doi-asserted-by":"crossref","unstructured":"Lancucki, A., Saha, I., Lipinski, P.: A new evolutionary gene selection technique. In: Proceedings of the International IEEE Conference on Evolutionary Computing, pp. 1612\u20131619 (2015)","DOI":"10.1109\/CEC.2015.7257080"},{"key":"11_CR21","doi-asserted-by":"publisher","first-page":"86","DOI":"10.1214\/aoms\/1177731944","volume":"11","author":"M Friedman","year":"1940","unstructured":"Friedman, M.: A comparison of alternative tests of significance for the problem of m rankings. Ann. Math. 11, 86\u201392 (1940)","journal-title":"Ann. Math."},{"issue":"5","key":"11_CR22","doi-asserted-by":"publisher","first-page":"638","DOI":"10.1093\/bioinformatics\/btt014","volume":"29","author":"B Xie","year":"2013","unstructured":"Xie, B., Ding, Q., Han, H., Wu, D.: miRCancer: a microRNA-cancer association database constructed by text mining on literature. Bioinformatics 29(5), 638\u2013644 (2013)","journal-title":"Bioinformatics"},{"issue":"2","key":"11_CR23","doi-asserted-by":"publisher","first-page":"2765","DOI":"10.1016\/j.asoc.2010.11.007","volume":"11","author":"I Saha","year":"2011","unstructured":"Saha, I., Maulik, U., Plewczynski, D.: A new multi-objective technique for differential fuzzy clustering. Appl. Soft Comput. 11(2), 2765\u20132776 (2011)","journal-title":"Appl. Soft Comput."},{"issue":"1","key":"11_CR24","doi-asserted-by":"publisher","first-page":"86","DOI":"10.1504\/IJDMB.2012.045542","volume":"6","author":"I Saha","year":"2012","unstructured":"Saha, I., Plewczynski, D., Maulik, U., Bandyopadhyay, S.: Improved differential evolution for microarray analysis. Int. J. Data Min. Bioinform. 6(1), 86\u2013103 (2012)","journal-title":"Int. J. Data Min. Bioinform."},{"issue":"7","key":"11_CR25","doi-asserted-by":"publisher","first-page":"1469","DOI":"10.1021\/ci500633c","volume":"55","author":"I Saha","year":"2015","unstructured":"Saha, I., Rak, B., Bhowmick, S.S., Maulik, U., Bhattacharjee, D., Koch, U., Lazniewski, M., Plewczynski, D.: Binding activity prediction of cyclin-dependent inhibitors. J. Chem. Inf. Model. 55(7), 1469\u20131482 (2015)","journal-title":"J. Chem. Inf. Model."},{"key":"11_CR26","doi-asserted-by":"crossref","unstructured":"Bhowmick, S.S., Saha, I., Mazzocco, G., Maulik, U., Rato, L., Bhattacharjee, D., Plewczynski, D.: Application of RotaSVM for HLA class II protein-peptide interaction prediction. In: Proceedings of the 5th International Conference on Bioinformatics, pp. 178\u2013185 (2014)","DOI":"10.5220\/0004804801780185"},{"key":"11_CR27","doi-asserted-by":"crossref","unstructured":"Mazzocco, G., Bhowmick, S.S., Saha, I., Maulik, U., Bhattacharjee, D., Plewczynski, D.: MaER: a new ensemble based multiclass classifier for binding activity prediction of HLA Class II proteins. in: Proceedings of the 6th International Conference on Pattern Recognition and Machine Intelligence, pp. 462\u2013471 (2015)","DOI":"10.1007\/978-3-319-19941-2_44"},{"issue":"4","key":"11_CR28","doi-asserted-by":"publisher","first-page":"820","DOI":"10.1039\/c3mb70486f","volume":"10","author":"I Saha","year":"2014","unstructured":"Saha, I., Zubek, J., Klingstr\u00f6m, T., Forsberg, S., Wikander, J., Kierczak, M., Maulik, U., Plewczynski, D.: Ensemble learning prediction of protein-protein interactions using proteins functional annotations. Mol. BioSyst. 10(4), 820\u2013830 (2014)","journal-title":"Mol. BioSyst."}],"container-title":["Lecture Notes in Computer Science","Swarm, Evolutionary, and Memetic Computing"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-48959-9_11","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,12]],"date-time":"2025-06-12T23:14:54Z","timestamp":1749770094000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-319-48959-9_11"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016]]},"ISBN":["9783319489582","9783319489599"],"references-count":28,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-48959-9_11","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2016]]},"assertion":[{"value":"1 December 2016","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}},{"value":"SEMCCO","order":1,"name":"conference_acronym","label":"Conference Acronym","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"International Conference on Swarm, Evolutionary, and Memetic Computing","order":2,"name":"conference_name","label":"Conference Name","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Hyderabad","order":3,"name":"conference_city","label":"Conference City","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"India","order":4,"name":"conference_country","label":"Conference Country","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2015","order":5,"name":"conference_year","label":"Conference Year","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"18 December 2015","order":7,"name":"conference_start_date","label":"Conference Start Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"19 December 2015","order":8,"name":"conference_end_date","label":"Conference End Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"6","order":9,"name":"conference_number","label":"Conference Number","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"semcco2015","order":10,"name":"conference_id","label":"Conference ID","group":{"name":"ConferenceInfo","label":"Conference Information"}}]}}