{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,8,7]],"date-time":"2025-08-07T21:07:02Z","timestamp":1754600822713,"version":"3.40.3"},"publisher-location":"Cham","reference-count":30,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319495859"},{"type":"electronic","value":"9783319495866"}],"license":[{"start":{"date-parts":[[2016,1,1]],"date-time":"2016-01-01T00:00:00Z","timestamp":1451606400000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2016]]},"DOI":"10.1007\/978-3-319-49586-6_51","type":"book-chapter","created":{"date-parts":[[2016,11,12]],"date-time":"2016-11-12T03:49:37Z","timestamp":1478922577000},"page":"714-725","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":9,"title":["PUEPro: A Computational Pipeline for Prediction of Urine Excretory Proteins"],"prefix":"10.1007","author":[{"given":"Yan","family":"Wang","sequence":"first","affiliation":[]},{"given":"Wei","family":"Du","sequence":"additional","affiliation":[]},{"given":"Yanchun","family":"Liang","sequence":"additional","affiliation":[]},{"given":"Xin","family":"Chen","sequence":"additional","affiliation":[]},{"given":"Chi","family":"Zhang","sequence":"additional","affiliation":[]},{"given":"Wei","family":"Pang","sequence":"additional","affiliation":[]},{"given":"Ying","family":"Xu","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2016,11,13]]},"reference":[{"key":"51_CR1","doi-asserted-by":"publisher","first-page":"443","DOI":"10.1191\/0962280204sm377ra","volume":"13","author":"S Lee","year":"2004","unstructured":"Lee, S., Huang, H., Zelen, M.: Early detection of disease and scheduling of screening examinations. Stat. Methods Med. Res. 13, 443\u2013456 (2004)","journal-title":"Stat. Methods Med. Res."},{"key":"51_CR2","doi-asserted-by":"publisher","first-page":"3881","DOI":"10.1021\/pr070328s","volume":"6","author":"V Thongboonkerd","year":"2007","unstructured":"Thongboonkerd, V.: Practical points in urinary proteomics. J. Proteome Res. 6, 3881\u20133890 (2007)","journal-title":"J. Proteome Res."},{"issue":"M111","key":"51_CR3","first-page":"010975","volume":"10","author":"C Shao","year":"2011","unstructured":"Shao, C., Li, M., Li, X., Wei, L., Zhu, L., Yang, F., Jia, L., Mu, Y., Wang, J., Guo, Z., Zhang, D., Yin, J., Wang, Z., Sun, W., Zhang, Z., Gao, Y.: A tool for biomarker discovery in the urinary proteome: a manually curated human and animal urine protein biomarker database. Mol. Cell. Proteomics 10(M111), 010975 (2011)","journal-title":"Mol. Cell. Proteomics"},{"key":"51_CR4","doi-asserted-by":"publisher","first-page":"2641","DOI":"10.1002\/cncr.26544","volume":"118","author":"F Abogunrin","year":"2012","unstructured":"Abogunrin, F., O\u2019Kane, H.F., Ruddock, M.W., Stevenson, M., Reid, C.N., O\u2019Sullivan, J.M., Anderson, N.H., O\u2019Rourke, D., Duggan, B., Lamont, J.V., Boyd, R.E., Hamilton, P., Nambirajan, T., Williamson, K.E.: The impact of biomarkers in multivariate algorithms for bladder cancer diagnosis in patients with hematuria. Cancer 118, 2641\u20132650 (2012)","journal-title":"Cancer"},{"key":"51_CR5","doi-asserted-by":"publisher","first-page":"1220","DOI":"10.1039\/c3mb25582d","volume":"9","author":"F Raimondo","year":"2013","unstructured":"Raimondo, F., Morosi, L., Corbetta, S., Chinello, C., Brambilla, P., Della Mina, P., Villa, A., Albo, G., Battaglia, C., Bosari, S., Magni, F., Pitto, M.: Differential protein profiling of renal cell carcinoma urinary exosomes. Mol. BioSyst. 9, 1220\u20131233 (2013)","journal-title":"Mol. BioSyst."},{"key":"51_CR6","doi-asserted-by":"publisher","first-page":"23","DOI":"10.1002\/(SICI)1097-0045(19980101)34:1<23::AID-PROS3>3.0.CO;2-L","volume":"34","author":"B Malavaud","year":"1998","unstructured":"Malavaud, B., Salama, G., Miedouge, M., Vincent, C., Rischmann, P., Sarramon, J.P., Serre, G.: Influence of digital rectal massage on urinary prostate-specific antigen: interest for the detection of local recurrence after radical prostatectomy. Prostate 34, 23\u201328 (1998)","journal-title":"Prostate"},{"key":"51_CR7","doi-asserted-by":"publisher","first-page":"953","DOI":"10.1007\/s00192-011-1401-8","volume":"22","author":"G Ghoniem","year":"2011","unstructured":"Ghoniem, G., Faruqui, N., Elmissiry, M., Mahdy, A., Abdelwahab, H., Oommen, M., Abdel-Mageed, A.B.: Differential profile analysis of urinary cytokines in patients with overactive bladder. Int. Urogynecol. J. 22, 953\u2013961 (2011)","journal-title":"Int. Urogynecol. J."},{"key":"51_CR8","doi-asserted-by":"publisher","first-page":"58","DOI":"10.1186\/1477-5956-8-58","volume":"8","author":"SS Abdullah-Soheimi","year":"2010","unstructured":"Abdullah-Soheimi, S.S., Lim, B.K., Hashim, O.H., Shuib, A.S.: Patients with ovarian carcinoma excrete different altered levels of urine CD59, kininogen-1 and fragments of inter-alpha-trypsin inhibitor heavy chain H4 and albumin. Proteome Sci. 8, 58 (2010)","journal-title":"Proteome Sci."},{"key":"51_CR9","doi-asserted-by":"publisher","first-page":"1976","DOI":"10.1002\/elps.201000598","volume":"32","author":"Y Li","year":"2011","unstructured":"Li, Y., Zhang, Y., Qiu, F., Qiu, Z.: Proteomic identification of exosomal LRG1: a potential urinary biomarker for detecting NSCLC. Electrophoresis 32, 1976\u20131983 (2011)","journal-title":"Electrophoresis"},{"key":"51_CR10","doi-asserted-by":"publisher","first-page":"390","DOI":"10.7150\/jca.4280","volume":"3","author":"MA Abdalla","year":"2012","unstructured":"Abdalla, M.A., Haj-Ahmad, Y.: Promising urinary protein biomarkers for the early detection of hepatocellular carcinoma among high-risk hepatitis C virus Egyptian patients. J Cancer. 3, 390\u2013403 (2012)","journal-title":"J Cancer."},{"key":"51_CR11","doi-asserted-by":"publisher","first-page":"e16875","DOI":"10.1371\/journal.pone.0016875","volume":"6","author":"CS Hong","year":"2011","unstructured":"Hong, C.S., Cui, J., Ni, Z., Su, Y., Puett, D., Li, F., Xu, Y.: A computational method for prediction of excretory proteins and application to identification of gastric cancer markers in urine. PLoS ONE 6, e16875 (2011)","journal-title":"PLoS ONE"},{"key":"51_CR12","doi-asserted-by":"publisher","first-page":"D907","DOI":"10.1093\/nar\/gkn849","volume":"37","author":"SJ Li","year":"2009","unstructured":"Li, S.J., Peng, M., Li, H., Liu, B.S., Wang, C., Wu, J.R., Li, Y.X., Zeng, R.: Sys-BodyFluid: a systematical database for human body fluid proteome research. Nucleic Acids Res. 37, D907\u2013D912 (2009)","journal-title":"Nucleic Acids Res."},{"issue":"M111","key":"51_CR13","first-page":"009993","volume":"10","author":"P Legrain","year":"2011","unstructured":"Legrain, P., Aebersold, R., Archakov, A., Bairoch, A., Bala, K., Beretta, L., Bergeron, J., Borchers, C.H., Corthals, G.L., Costello, C.E., Deutsch, E.W., Domon, B., Hancock, W., He, F., Hochstrasser, D., Marko-Varga, G., Salekdeh, G.H., Sechi, S., Snyder, M., Srivastava, S., Uhlen, M., Wu, C.H., Yamamoto, T., Paik, Y.K., Omenn, G.S.: The human proteome project: current state and future direction. Mol. Cell. Proteomics 10(M111), 009993 (2011)","journal-title":"Mol. Cell. Proteomics"},{"key":"51_CR14","doi-asserted-by":"publisher","first-page":"R80","DOI":"10.1186\/gb-2006-7-9-r80","volume":"7","author":"J Adachi","year":"2006","unstructured":"Adachi, J., Kumar, C., Zhang, Y., Olsen, J.V., Mann, M.: The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins. Genome Biol. 7, R80 (2006)","journal-title":"Genome Biol."},{"key":"51_CR15","doi-asserted-by":"publisher","first-page":"823","DOI":"10.1002\/rcm.4441","volume":"24","author":"QR Li","year":"2010","unstructured":"Li, Q.R., Fan, K.X., Li, R.X., Dai, J., Wu, C.C., Zhao, S.L., Wu, J.R., Shieh, C.H., Zeng, R.: A comprehensive and non-prefractionation on the protein level approach for the human urinary proteome: touching phosphorylation in urine. Rapid Commun. Mass Spectrom. 24, 823\u2013832 (2010)","journal-title":"Rapid Commun. Mass Spectrom."},{"key":"51_CR16","doi-asserted-by":"publisher","first-page":"2734","DOI":"10.1021\/pr2003038","volume":"10","author":"A Marimuthu","year":"2011","unstructured":"Marimuthu, A., O\u2019Meally, R.N., Chaerkady, R., Subbannayya, Y., Nanjappa, V., Kumar, P., Kelkar, D.S., Pinto, S.M., Sharma, R., Renuse, S., Goel, R., Christopher, R., Delanghe, B., Cole, R.N., Harsha, H.C., Pandey, A.: A comprehensive map of the human urinary proteome. J. Proteome Res. 10, 2734\u20132743 (2011)","journal-title":"J. Proteome Res."},{"key":"51_CR17","doi-asserted-by":"publisher","first-page":"1850","DOI":"10.1074\/mcp.R800001-MCP200","volume":"7","author":"S Decramer","year":"2008","unstructured":"Decramer, S., Gonzalez de Peredo, A., Breuil, B., Mischak, H., Monsarrat, B., Bascands, J.L., Schanstra, J.P.: Urine in clinical proteomics. Mol. Cell. Proteomics 7, 1850\u20131862 (2008)","journal-title":"Mol. Cell. Proteomics"},{"key":"51_CR18","doi-asserted-by":"publisher","first-page":"283","DOI":"10.1111\/j.1440-1797.2005.00387.x","volume":"10","author":"EJ Hoorn","year":"2005","unstructured":"Hoorn, E.J., Pisitkun, T., Zietse, R., Gross, P., Frokiaer, J., Wang, N.S., Gonzales, P.A., Star, R.A., Knepper, M.A.: Prospects for urinary proteomics: exosomes as a source of urinary biomarkers. Nephrology (Carlton) 10, 283\u2013290 (2005)","journal-title":"Nephrology (Carlton)"},{"key":"51_CR19","doi-asserted-by":"publisher","first-page":"e66911","DOI":"10.1371\/journal.pone.0066911","volume":"8","author":"L Jia","year":"2013","unstructured":"Jia, L., Li, X., Shao, C., Wei, L., Li, M., Guo, Z., Liu, Z., Gao, Y.: Using an isolated rat kidney model to identify kidney origin proteins in urine. PLoS ONE 8, e66911 (2013)","journal-title":"PLoS ONE"},{"key":"51_CR20","doi-asserted-by":"publisher","first-page":"206","DOI":"10.1038\/nrurol.2013.24","volume":"10","author":"SL Wood","year":"2013","unstructured":"Wood, S.L., Knowles, M.A., Thompson, D., Selby, P.J., Banks, R.E.: Proteomic studies of urinary biomarkers for prostate, bladder and kidney cancers. Nat. Rev. Urol. 10, 206\u2013218 (2013)","journal-title":"Nat. Rev. Urol."},{"key":"51_CR21","doi-asserted-by":"publisher","first-page":"2370","DOI":"10.1093\/bioinformatics\/btn418","volume":"24","author":"J Cui","year":"2008","unstructured":"Cui, J., Liu, Q., Puett, D., Xu, Y.: Computational prediction of human proteins that can be secreted into the bloodstream. Bioinformatics 24, 2370\u20132375 (2008)","journal-title":"Bioinformatics"},{"key":"51_CR22","doi-asserted-by":"publisher","first-page":"D222","DOI":"10.1093\/nar\/gkt1223","volume":"42","author":"RD Finn","year":"2014","unstructured":"Finn, R.D., Bateman, A., Clements, J., Coggill, P., Eberhardt, R.Y., Eddy, S.R., Heger, A., Hetherington, K., Holm, L., Mistry, J., Sonnhammer, E.L., Tate, J., Punta, M.: Pfam: the protein families database. Nucleic Acids Res. 42, D222\u2013D230 (2014)","journal-title":"Nucleic Acids Res."},{"key":"51_CR23","doi-asserted-by":"publisher","first-page":"9440","DOI":"10.1073\/pnas.1530509100","volume":"100","author":"JD Storey","year":"2003","unstructured":"Storey, J.D., Tibshirani, R.: Statistical significance for genomewide studies. Proc. Natl. Acad. Sci. U.S.A. 100, 9440\u20139445 (2003)","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"51_CR24","doi-asserted-by":"publisher","first-page":"389","DOI":"10.1023\/A:1012487302797","volume":"46","author":"I Guyon","year":"2002","unstructured":"Guyon, I., Weston, J., Barnhill, S., Vapnik, V.: Gene selection for cancer classification using support vector machines. Mach. Learn. 46, 389\u2013422 (2002)","journal-title":"Mach. Learn."},{"key":"51_CR25","doi-asserted-by":"publisher","first-page":"1443","DOI":"10.1162\/089976601750264965","volume":"13","author":"B Scholkopf","year":"2001","unstructured":"Scholkopf, B., Platt, J.C., Shawe-Taylor, J., Smola, A.J., Williamson, R.C.: Estimating the support of a high-dimensional distribution. Neural Comput. 13, 1443\u20131471 (2001)","journal-title":"Neural Comput."},{"key":"51_CR26","first-page":"1958","volume":"296","author":"T Hampton","year":"2006","unstructured":"Hampton, T.: Cancer genome atlas. JAMA 296, 1958 (2006)","journal-title":"JAMA"},{"key":"51_CR27","unstructured":"Harris, N.S., Winter, W.E.: Multiple myeloma and related serum protein disorders: an electrophoretic guide, Demos Medical Publishing (2012)"},{"key":"51_CR28","doi-asserted-by":"publisher","first-page":"D71","DOI":"10.1093\/nar\/gkr981","volume":"40","author":"Consortium, U","year":"2012","unstructured":"Consortium, U: Reorganizing the protein space at the Universal Protein Resource (UniProt). Nucleic Acids Res. 40, D71\u2013D75 (2012)","journal-title":"Nucleic Acids Res."},{"key":"51_CR29","doi-asserted-by":"publisher","first-page":"44","DOI":"10.1038\/nprot.2008.211","volume":"4","author":"DW Huang","year":"2009","unstructured":"Huang, D.W., Sherman, B.T., Lempicki, R.A.: Systematic and integrative analysis of large gene lists using DAVID Bioinformatics Resources. Nature Protoc. 4, 44\u201357 (2009)","journal-title":"Nature Protoc."},{"key":"51_CR30","doi-asserted-by":"crossref","unstructured":"Nolen, B.M., Lomakin, A., Marrangoni, A., Velikokhatnaya, L., Prosser, D., Lokshin, A.E.: Urinary protein biomarkers in the early detection of lung cancer. Cancer Prev. Res. (Phila) (2014)","DOI":"10.1158\/1940-6207.CAPR-14-0210"}],"container-title":["Lecture Notes in Computer Science","Advanced Data Mining and Applications"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-49586-6_51","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,3,13]],"date-time":"2024-03-13T16:00:26Z","timestamp":1710345626000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-3-319-49586-6_51"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016]]},"ISBN":["9783319495859","9783319495866"],"references-count":30,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-49586-6_51","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2016]]},"assertion":[{"value":"13 November 2016","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}},{"value":"ADMA","order":1,"name":"conference_acronym","label":"Conference Acronym","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"International Conference on Advanced Data Mining and Applications","order":2,"name":"conference_name","label":"Conference Name","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Gold Coast","order":3,"name":"conference_city","label":"Conference City","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Australia","order":4,"name":"conference_country","label":"Conference Country","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2016","order":5,"name":"conference_year","label":"Conference Year","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"12 December 2016","order":7,"name":"conference_start_date","label":"Conference Start Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"15 December 2016","order":8,"name":"conference_end_date","label":"Conference End Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"12","order":9,"name":"conference_number","label":"Conference Number","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"adma2016","order":10,"name":"conference_id","label":"Conference ID","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"http:\/\/cs.adelaide.edu.au\/~adma2016\/index.html","order":11,"name":"conference_url","label":"Conference URL","group":{"name":"ConferenceInfo","label":"Conference Information"}}]}}