{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,6,5]],"date-time":"2025-06-05T09:30:34Z","timestamp":1749115834483,"version":"3.40.3"},"publisher-location":"Cham","reference-count":23,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319538617"},{"type":"electronic","value":"9783319538624"}],"license":[{"start":{"date-parts":[[2017,1,1]],"date-time":"2017-01-01T00:00:00Z","timestamp":1483228800000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2017]]},"DOI":"10.1007\/978-3-319-53862-4_21","type":"book-chapter","created":{"date-parts":[[2017,2,18]],"date-time":"2017-02-18T04:41:29Z","timestamp":1487392889000},"page":"243-256","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":4,"title":["A Collaborative Simulation-Analysis Workflow for Computational Neuroscience Using HPC"],"prefix":"10.1007","author":[{"given":"Johanna","family":"Senk","sequence":"first","affiliation":[]},{"given":"Alper","family":"Yegenoglu","sequence":"additional","affiliation":[]},{"given":"Olivier","family":"Amblet","sequence":"additional","affiliation":[]},{"given":"Yury","family":"Brukau","sequence":"additional","affiliation":[]},{"given":"Andrew","family":"Davison","sequence":"additional","affiliation":[]},{"given":"David Roland","family":"Lester","sequence":"additional","affiliation":[]},{"given":"Anna","family":"L\u00fchrs","sequence":"additional","affiliation":[]},{"given":"Pietro","family":"Quaglio","sequence":"additional","affiliation":[]},{"given":"Vahid","family":"Rostami","sequence":"additional","affiliation":[]},{"given":"Andrew","family":"Rowley","sequence":"additional","affiliation":[]},{"given":"Bernd","family":"Schuller","sequence":"additional","affiliation":[]},{"given":"Alan Barry","family":"Stokes","sequence":"additional","affiliation":[]},{"given":"Sacha Jennifer","family":"van Albada","sequence":"additional","affiliation":[]},{"given":"Daniel","family":"Zielasko","sequence":"additional","affiliation":[]},{"given":"Markus","family":"Diesmann","sequence":"additional","affiliation":[]},{"given":"Benjamin","family":"Weyers","sequence":"additional","affiliation":[]},{"given":"Michael","family":"Denker","sequence":"additional","affiliation":[]},{"given":"Sonja","family":"Gr\u00fcn","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2017,2,19]]},"reference":[{"key":"21_CR1","doi-asserted-by":"crossref","unstructured":"van Albada, S.J., Rowley, A.G., Hopkins, M., Schmidt, M., Senk, J., Stokes, A.B., Galluppi, F., Lester, D.R., Diesmann, M., Furber, S.B.: Full-scale simulation of a cortical microcircuit on SpiNNaker. In: Frontiers in Neuroinformatics Conference Abstract: Neuroinformatics 2016 (2016). \n                      http:\/\/dx.doi.org\/10.3389\/conf.fninf.2016.20.00029","DOI":"10.3389\/conf.fninf.2016.20.00029"},{"issue":"9","key":"21_CR2","doi-asserted-by":"publisher","first-page":"e1004490","DOI":"10.1371\/journal.pcbi.1004490","volume":"11","author":"SJ Albada van","year":"2015","unstructured":"van Albada, S.J., Helias, M., Diesmann, M.: Scalability of asynchronous networks is limited by one-to-one mapping between effective connectivity and correlations. PLoS Comput. Biol. 11(9), e1004490 (2015). \n                      http:\/\/dx.doi.org\/10.1371\/journal.pcbi.1004490","journal-title":"PLoS Comput. Biol."},{"key":"21_CR3","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"66","DOI":"10.1007\/3-540-47849-3_4","volume-title":"SOFSEM 1999: Theory and Practice of Informatics","author":"W Appelt","year":"1999","unstructured":"Appelt, W.: WWW based collaboration with the BSCW system. In: Pavelka, J., Tel, G., Barto\u0161ek, M. (eds.) SOFSEM 1999. LNCS, vol. 1725, pp. 66\u201378. Springer, Heidelberg (1999). doi:\n                      10.1007\/3-540-47849-3_4"},{"issue":"4\u20135","key":"21_CR4","doi-asserted-by":"publisher","first-page":"263","DOI":"10.1007\/s00422-011-0435-9","volume":"104","author":"D Br\u00fcderle","year":"2011","unstructured":"Br\u00fcderle, D., Petrovici, M.A., Vogginger, B., Ehrlich, M., Pfeil, T., Millner, S., Gr\u00fcbl, A., Wendt, K., M\u00fcller, E., Schwartz, M.O., de Oliveira, D.H., Jeltsch, S., Fieres, J., Schilling, M., M\u00fcller, P., Breitwieser, O., Petkov, V., Muller, L., Davison, A.P., Krishnamurthy, P., Kremkow, J., Lundqvist, M., Muller, E., Partzsch, J., Scholze, S., Z\u00fchl, L., Mayr, C., Destexhe, A., Diesmann, M., Potjans, T.C., Lansner, A., Sch\u00fcffny, R., Schemmel, J., Meier, K.: A comprehensive workflow for general-purpose neural modeling with highly configurable neuromorphic hardware systems. Biol. Cybern. 104(4\u20135), 263\u2013296 (2011). \n                      http:\/\/dx.doi.org\/10.1007\/s00422-011-0435-9","journal-title":"Biol. Cybern."},{"issue":"11","key":"21_CR5","first-page":"204","volume":"2","author":"AP Davison","year":"2009","unstructured":"Davison, A.P., Br\u00fcderle, D., Kremkow, J., Muller, E., Pecevski, D., Perrinet, L., Yger, P.: PyNN: a common interface for neuronal network simulators. Front. Neuroinformatics 2(11), 204 (2009). \n                      http:\/\/dx.doi.org\/10.3389\/neuro.11.011.2008","journal-title":"Front. Neuroinformatics"},{"issue":"3","key":"21_CR6","doi-asserted-by":"publisher","first-page":"374","DOI":"10.3389\/neuro.01.036.2009","volume":"3","author":"AP Davison","year":"2009","unstructured":"Davison, A.P., Hines, M.L., Muller, E.: Trends in programming languages for neuroscience simulations. Front. Neurosci. 3(3), 374\u2013380 (2009). \n                      http:\/\/dx.doi.org\/10.3389\/neuro.01.036.2009","journal-title":"Front. Neurosci."},{"key":"21_CR7","unstructured":"Davison, A.P., Yger, P., Muller, E., Kremkow, J., Br\u00fcderle, D., Perrinet, L., Eppler, J., Pecevski, D., Debeissat, N., Djurfeldt, M., Schmuker, M., Kaplan, B., Natschlaeger, T., Ray, S., Zaytsev, Y., Gravier, A.: PyNN 0.7.5. \n                      https:\/\/pypi.python.org\/pypi\/PyNN\/0.7.5"},{"key":"21_CR8","unstructured":"Davison, A.P., Yger, P., Muller, E., Kremkow, J., Br\u00fcderle, D., Perrinet, L., Eppler, J., Pecevski, D., Debeissat, N., Djurfeldt, M., Schmuker, M., Kaplan, B., Natschlaeger, T., Ray, S., Zaytsev, Y., Antolik, J., Gravier, A., Close, T., Breitwieser, O., Sch\u00fccker, J., Schmidt, M.: PyNN 0.8.0 (2015). \n                      https:\/\/github.com\/NeuralEnsemble\/PyNN\/releases\/tag\/0.8.0"},{"key":"21_CR9","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"58","DOI":"10.1007\/978-3-319-50862-7_5","volume-title":"Brain-Inspired Computing","author":"M Denker","year":"2016","unstructured":"Denker, M., Gr\u00fcn, S.: Designing workflows for the reproducible analysis of electrophysiological data. In: Amunts, K., Grandinetti, L., Lippert, T., Petkov, N. (eds.) BrainComp 2015. LNCS, vol. 10087, pp. 58\u201372. Springer, Cham (2016). doi:\n                      10.1007\/978-3-319-50862-7_5"},{"key":"21_CR10","unstructured":"Dougiamas, M., Taylor, P.: Moodle: Using learning communities to create an open source course management system. In: World Conference on Educational Multimedia, Hypermedia and Telecommunications (EDMEDIA) (2003). \n                      http:\/\/research.moodle.net\/id\/eprint\/33"},{"key":"21_CR11","unstructured":"Eppler, J.M., Pauli, R., Peyser, A., Ippen, T., Morrison, A., Senk, J., Schenck, W., Bos, H., Helias, M., Schmidt, M., Kunkel, S., Jordan, J., Gewaltig, M.O., Bachmann, C., Schuecker, J., Albada, S., Zito, T., Deger, M., Michler, F., Hagen, E., Setareh, H., Riquelme, L., Shirvani, A., Duarte, R., Deepu, R., Plesser, H.E.: Nest 2.8.0 (2015). \n                      https:\/\/doi.org\/10.5281\/zenodo.32969"},{"issue":"12","key":"21_CR12","doi-asserted-by":"publisher","first-page":"2454","DOI":"10.1109\/TC.2012.142","volume":"62","author":"SB Furber","year":"2013","unstructured":"Furber, S.B., Lester, D.R., Plana, L.A., Garside, J.D., Painkras, E., Temple, S., Brown, A.D.: Overview of the SpiNNaker system architecture. IEEE Trans. Comput. 62(12), 2454\u20132467 (2013). \n                      http:\/\/dx.doi.org\/10.1109\/TC.2012.142","journal-title":"IEEE Trans. Comput."},{"key":"21_CR13","unstructured":"Garcia, S., Davison, A.P., Rodgers, C., Yger, P., Mahnoun, Y., Estabanez, L., Sobolev, A., Brizzi, T., Jaillet, F., Rautenberg, P., Wachtler, T., Dejean, C., Pr\u00f6pper, R., Guarino, D.: Neo 0.4.1. \n                      https:\/\/github.com\/NeuralEnsemble\/python-neo\/releases\/tag\/0.4.1"},{"key":"21_CR14","doi-asserted-by":"crossref","unstructured":"Garcia, S., Guarino, D., Jaillet, F., Jennings, T., Pr\u00f6pper, R., Rautenberg, P.L., Rodgers, C.C., Sobolev, A., Wachtler, T., Yger, P., Davison, A.P.: Neo: an object model for handling electrophysiology data in multiple formats. Front. Neuroinformatics 8, 10 (2014). \n                      http:\/\/dx.doi.org\/10.3389\/fninf.2014.00010","DOI":"10.3389\/fninf.2014.00010"},{"key":"21_CR15","doi-asserted-by":"crossref","unstructured":"Gewaltig, M.O., Diesmann, M.: NEST (NEural Simulation Tool). Scholarpedia 2(4) (2007). \n                      http:\/\/dx.doi.org\/10.4249\/scholarpedia.1430","DOI":"10.4249\/scholarpedia.1430"},{"key":"21_CR16","doi-asserted-by":"crossref","unstructured":"Grewe, J., Wachtler, T., Benda, J.: A bottom-up approach to data annotation in neurophysiology. Front. Neuroinformatics 5 (2011). \n                      http:\/\/dx.doi.org\/10.3389\/fninf.2011.00016","DOI":"10.3389\/fninf.2011.00016"},{"issue":"78","key":"21_CR17","first-page":"1","volume":"8","author":"S Kunkel","year":"2014","unstructured":"Kunkel, S., Schmidt, M., Eppler, J.M., Plesser, H.E., Masumoto, G., Igarashi, J., Ishii, S., Fukai, T., Morrison, A., Diesmann, M., Helias, M.: Spiking network simulation code for petascale computers. Front. Neuroinformatics 8(78), 1 (2014). \n                      http:\/\/dx.doi.org\/10.3389\/fninf.2014.00078","journal-title":"Front. Neuroinformatics"},{"issue":"3","key":"21_CR18","doi-asserted-by":"publisher","first-page":"785","DOI":"10.1093\/cercor\/bhs358","volume":"24","author":"TC Potjans","year":"2014","unstructured":"Potjans, T.C., Diesmann, M.: The cell-type specific cortical microcircuit: relating structure and activity in a full-scale spiking network model. Cereb. Cortex 24(3), 785\u2013806 (2014). \n                      http:\/\/dx.doi.org\/10.1093\/cercor\/bhs358","journal-title":"Cereb. Cortex"},{"key":"21_CR19","unstructured":"Schmidt, M., Bakker, R., Shen, K., Bezgin, G., Hilgetag, C.C., Diesmann, M., van Albada, S.J.: Full-density multi-scale account of structure and dynamics of macaque visual cortex (2015). arXiv preprint \n                      https:\/\/arxiv.org\/abs\/1511.09364"},{"key":"21_CR20","unstructured":"Stokes, A.B., Rowley, A.G.D., Knight, J., Lester, D.R., Rast, A., Hopkins, M.W., Davidson, S., Temple, S., Plana, L., Davies, S., Sharpe, T., Patterson, C., Furber, S.B.: sPyNNaker 3.0.0 (2016). \n                      https:\/\/github.com\/SpiNNakerManchester\/sPyNNaker\/releases\/tag\/3.0.0"},{"key":"21_CR21","unstructured":"Yegenoglu, A., Denker, M., Phan, L., Holstein, D., Chorley, P., Ito, J., Jennings, T., Meyes, R., Quaglio, P., Rostami, V., Sprenger, J., Torre, E., Davison, A., Gr\u00fcn, S.: Elephant - open-source tool for the analysis of electrophysiological data sets. In: Bernstein Conference 2015: Abstract Book, p. W-05 (2015). \n                      http:\/\/dx.doi.org\/10.12751\/nncn.bc2015.0126"},{"key":"21_CR22","unstructured":"Yegenoglu, A., Davison, A.P., Holstein, D., Muller, E., Torre, E., Hagen, E., Gosmann, J., Sprenger, J., Ito, J., Denker, M., Chorley, P., Yger, P., Quaglio, P., Meyes, R., Rostami, V., Ray, S., Pr\u00f6pper, R., Gerkin, R.C., Telenczuk, B.: Elephant 0.3.0. \n                      https:\/\/github.com\/NeuralEnsemble\/elephant\/releases\/tag\/0.3.0"},{"key":"21_CR23","doi-asserted-by":"crossref","unstructured":"Zehl, L., Jaillet, F., Stoewer, A., Grewe, J., Sobolev, A., Wachtler, T., Brochier, T.G., Riehle, A., Denker, M., Gr\u00fcn, S.: Handling metadata in a neurophysiology laboratory. Front. Neuroinformatics 10 (2016). \n                      http:\/\/dx.doi.org\/10.3389\/fninf.2016.00026","DOI":"10.3389\/fninf.2016.00026"}],"container-title":["Lecture Notes in Computer Science","High-Performance Scientific Computing"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-53862-4_21","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,20]],"date-time":"2019-05-20T01:47:21Z","timestamp":1558316841000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-319-53862-4_21"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017]]},"ISBN":["9783319538617","9783319538624"],"references-count":23,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-53862-4_21","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2017]]},"assertion":[{"value":"19 February 2017","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}},{"value":"JHPCS","order":1,"name":"conference_acronym","label":"Conference Acronym","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"J\u00fclich Aachen Research Alliance (JARA) High-Performance Computing Symposium","order":2,"name":"conference_name","label":"Conference Name","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Aachen","order":3,"name":"conference_city","label":"Conference City","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Germany","order":4,"name":"conference_country","label":"Conference Country","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2016","order":5,"name":"conference_year","label":"Conference Year","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"4 October 2016","order":7,"name":"conference_start_date","label":"Conference Start Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"5 October 2016","order":8,"name":"conference_end_date","label":"Conference End Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"1","order":9,"name":"conference_number","label":"Conference Number","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"jhpcs2016","order":10,"name":"conference_id","label":"Conference ID","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"http:\/\/hpc-symposium.jara.org\/","order":11,"name":"conference_url","label":"Conference URL","group":{"name":"ConferenceInfo","label":"Conference Information"}}]}}