{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,25]],"date-time":"2025-03-25T14:23:05Z","timestamp":1742912585483,"version":"3.40.3"},"publisher-location":"Cham","reference-count":53,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319595740"},{"type":"electronic","value":"9783319595757"}],"license":[{"start":{"date-parts":[[2017,1,1]],"date-time":"2017-01-01T00:00:00Z","timestamp":1483228800000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2017]]},"DOI":"10.1007\/978-3-319-59575-7_18","type":"book-chapter","created":{"date-parts":[[2017,5,30]],"date-time":"2017-05-30T09:14:49Z","timestamp":1496135689000},"page":"196-210","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":7,"title":["Coestimation of Gene Trees and Reconciliations Under a Duplication-Loss-Coalescence Model"],"prefix":"10.1007","author":[{"given":"Bo","family":"Zhang","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yi-Chieh","family":"Wu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2017,5,31]]},"reference":[{"issue":"2","key":"18_CR1","doi-asserted-by":"publisher","first-page":"132","DOI":"10.2307\/2412519","volume":"28","author":"M Goodman","year":"1979","unstructured":"Goodman, M., Czelusniak, J., Moore, G.W., Romero-Herrera, A.E., Matsuda, G.: Fitting the gene lineage into its species lineage, a parsimony strategy illustrated by cladograms constructed from globin sequences. Syst. Zool. 28(2), 132\u2013163 (1979)","journal-title":"Syst. Zool."},{"issue":"1","key":"18_CR2","first-page":"58","volume":"43","author":"RDM Page","year":"1994","unstructured":"Page, R.D.M.: Maps between trees and cladistic analysis of historical associations among genes, organisms, and areas. Syst. Biol. 43(1), 58\u201377 (1994)","journal-title":"Syst. Biol."},{"key":"18_CR3","doi-asserted-by":"crossref","unstructured":"Arvestad, L., Berglund, A.-C., Lagergren, J., Sennblad, B.: Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution. In: Proceedings of the Eighth Annual International Conference on Research in Computational Molecular Biology, RECOMB 2004, pp. 326\u2013335. ACM, New York (2004)","DOI":"10.1145\/974614.974657"},{"issue":"2","key":"18_CR4","doi-asserted-by":"publisher","first-page":"320","DOI":"10.1089\/cmb.2006.13.320","volume":"13","author":"D Durand","year":"2006","unstructured":"Durand, D., Hall\u00f3rsson, B.V., Vernot, B.: A hybrid micro-macroevolutionary approach to gene tree reconstruction. J. Comput. Biol. 13(2), 320\u2013335 (2006)","journal-title":"J. Comput. Biol."},{"issue":"1\u20133","key":"18_CR5","doi-asserted-by":"publisher","first-page":"378","DOI":"10.1016\/j.tcs.2006.05.019","volume":"359","author":"P G\u00f3recki","year":"2006","unstructured":"G\u00f3recki, P., Tiuryn, J.: DLS-trees: a model of evolutionary scenarios. Theoret. Comput. Sci. 359(1\u20133), 378\u2013399 (2006)","journal-title":"Theoret. Comput. Sci."},{"key":"18_CR6","doi-asserted-by":"publisher","first-page":"572","DOI":"10.1093\/nar\/gkj118","volume":"34","author":"H Li","year":"2006","unstructured":"Li, H., Coghlan, A., Ruan, J., Coin, L.J., H\u2019erich\u2019e, J.-K., Osmotherly, L., Li, R., Liu, T., Zhang, Z., Bolund, L., Wong, G.K.-S., Zheng, W., Dehal, P., Wang, J., Durbin, R.: TreeFam: a curated database of phylogenetic trees of animal gene families. Nucleic Acids Res. 34, 572\u2013580 (2006)","journal-title":"Nucleic Acids Res."},{"issue":"7","key":"18_CR7","doi-asserted-by":"publisher","first-page":"141","DOI":"10.1186\/gb-2007-8-7-r141","volume":"8","author":"M Hahn","year":"2007","unstructured":"Hahn, M.: Bias in phylogenetic tree reconciliation methods: implications for vertebrate genome evolution. Genome Biol. 8(7), 141 (2007)","journal-title":"Genome Biol."},{"issue":"12","key":"18_CR8","doi-asserted-by":"publisher","first-page":"1932","DOI":"10.1101\/gr.7105007","volume":"17","author":"MD Rasmussen","year":"2007","unstructured":"Rasmussen, M.D., Kellis, M.: Accurate gene-tree reconstruction by learning gene- and species-specific substitution rates across multiple complete genomes. Genome Res. 17(12), 1932\u20131942 (2007)","journal-title":"Genome Res."},{"issue":"1","key":"18_CR9","doi-asserted-by":"publisher","first-page":"273","DOI":"10.1093\/molbev\/msq189","volume":"28","author":"MD Rasmussen","year":"2011","unstructured":"Rasmussen, M.D., Kellis, M.: A Bayesian approach for fast and accurate gene tree reconstruction. Mol. Biol. Evol. 28(1), 273\u2013290 (2011)","journal-title":"Mol. Biol. Evol."},{"issue":"3","key":"18_CR10","doi-asserted-by":"publisher","first-page":"235","DOI":"10.1016\/0304-4149(82)90011-4","volume":"13","author":"JFC Kingman","year":"1982","unstructured":"Kingman, J.F.C.: The coalescent. Stoch. Proc. Appl. 13(3), 235\u2013248 (1982)","journal-title":"Stoch. Proc. Appl."},{"issue":"5","key":"18_CR11","first-page":"568","volume":"5","author":"P Pamilo","year":"1988","unstructured":"Pamilo, P., Nei, M.: Relationships between gene trees and species trees. Mol. Biol. Evol. 5(5), 568\u2013583 (1988)","journal-title":"Mol. Biol. Evol."},{"issue":"4","key":"18_CR12","doi-asserted-by":"crossref","first-page":"957","DOI":"10.1093\/genetics\/122.4.957","volume":"122","author":"N Takahata","year":"1989","unstructured":"Takahata, N.: Gene genealogy in three related populations: consistency probability between gene and population trees. Genetics 122(4), 957\u2013966 (1989)","journal-title":"Genetics"},{"issue":"3","key":"18_CR13","doi-asserted-by":"publisher","first-page":"523","DOI":"10.1093\/sysbio\/46.3.523","volume":"46","author":"WP Maddison","year":"1997","unstructured":"Maddison, W.P.: Gene trees in species trees. Syst. Biol. 46(3), 523\u2013536 (1997)","journal-title":"Syst. Biol."},{"issue":"2","key":"18_CR14","doi-asserted-by":"publisher","first-page":"225","DOI":"10.1006\/tpbi.2001.1568","volume":"61","author":"NA Rosenberg","year":"2002","unstructured":"Rosenberg, N.A.: The probability of topological concordance of gene trees and species trees. Theor. Popul. Biol. 61(2), 225\u2013247 (2002)","journal-title":"Theor. Popul. Biol."},{"issue":"4","key":"18_CR15","doi-asserted-by":"crossref","first-page":"1645","DOI":"10.1093\/genetics\/164.4.1645","volume":"164","author":"B Rannala","year":"2003","unstructured":"Rannala, B., Yang, Z.: Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci. Genetics 164(4), 1645\u20131656 (2003)","journal-title":"Genetics"},{"issue":"6","key":"18_CR16","doi-asserted-by":"publisher","first-page":"332","DOI":"10.1016\/j.tree.2009.01.009","volume":"24","author":"JH Degnan","year":"2009","unstructured":"Degnan, J.H., Rosenberg, N.A.: Gene tree discordance, phylogenetic inference and the multispecies coalescent. Trends Ecol. Evol. 24(6), 332\u2013340 (2009)","journal-title":"Trends Ecol. Evol."},{"key":"18_CR17","volume-title":"Coalescent Theory: An Introduction","author":"J Wakeley","year":"2009","unstructured":"Wakeley, J.: Coalescent Theory: An Introduction. Roberts & Company Publishers, Greenwood Village (2009)"},{"issue":"3","key":"18_CR18","doi-asserted-by":"publisher","first-page":"570","DOI":"10.1093\/molbev\/msp274","volume":"27","author":"J Heled","year":"2010","unstructured":"Heled, J., Drummond, A.J.: Bayesian inference of species trees from multilocus data. Mol. Biol. Evol. 27(3), 570\u2013580 (2010)","journal-title":"Mol. Biol. Evol."},{"issue":"3","key":"18_CR19","doi-asserted-by":"publisher","first-page":"475","DOI":"10.1101\/gr.161968.113","volume":"24","author":"Y-C Wu","year":"2014","unstructured":"Wu, Y.-C., Rasmussen, M.D., Bansal, M.S., Kellis, M.: Most parsimonious reconciliation in the presence of gene duplication, loss, and deep coalescence using labeled coalescent trees. Genome Res. 24(3), 475\u2013486 (2014)","journal-title":"Genome Res."},{"key":"18_CR20","doi-asserted-by":"publisher","first-page":"755","DOI":"10.1101\/gr.123901.111","volume":"22","author":"MD Rasmussen","year":"2012","unstructured":"Rasmussen, M.D., Kellis, M.: Unified modeling of gene duplication, loss, and coalescence using a locus tree. Genome Res. 22, 755\u2013765 (2012)","journal-title":"Genome Res."},{"issue":"5","key":"18_CR21","doi-asserted-by":"publisher","first-page":"361","DOI":"10.1038\/nrg1603","volume":"6","author":"F Delsuc","year":"2005","unstructured":"Delsuc, F., Brinkmann, H., Philippe, H.: Phylogenomics and the reconstruction of the tree of life. Nat. Rev. Genet. 6(5), 361\u2013375 (2005)","journal-title":"Nat. Rev. Genet."},{"issue":"2","key":"18_CR22","doi-asserted-by":"publisher","first-page":"117","DOI":"10.1093\/sysbio\/syq072","volume":"60","author":"JG Burleigh","year":"2011","unstructured":"Burleigh, J.G., Bansal, M.S., Eulenstein, O., Hartmann, S., Wehe, A., Vision, T.J.: Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees. Syst. Biol. 60(2), 117\u2013125 (2011)","journal-title":"Syst. Biol."},{"key":"18_CR23","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"148","DOI":"10.1007\/978-3-642-21260-4_17","volume-title":"Bioinformatics Research and Applications","author":"P G\u00f3recki","year":"2011","unstructured":"G\u00f3recki, P., Eulenstein, O.: A linear time algorithm for error-corrected reconciliation of unrooted gene trees. In: Chen, J., Wang, J., Zelikovsky, A. (eds.) ISBRA 2011. LNCS, vol. 6674, pp. 148\u2013159. Springer, Heidelberg (2011). doi:10.1007\/978-3-642-21260-4_17"},{"issue":"1","key":"18_CR24","doi-asserted-by":"publisher","first-page":"110","DOI":"10.1093\/sysbio\/sys076","volume":"62","author":"Y-C Wu","year":"2013","unstructured":"Wu, Y.-C., Rasmussen, M.D., Bansal, M.S., Kellis, M.: TreeFix: statistically informed gene tree error correction using species trees. Syst. Biol. 62(1), 110\u2013120 (2013)","journal-title":"Syst. Biol."},{"issue":"3","key":"18_CR25","doi-asserted-by":"publisher","first-page":"503","DOI":"10.1080\/10635150802164587","volume":"57","author":"JC Avise","year":"2008","unstructured":"Avise, J.C., Robinson, T.J.: Hemiplasy: a new term in the lexicon of phylogenetics. Syst. Biol. 57(3), 503\u2013507 (2008)","journal-title":"Syst. Biol."},{"key":"18_CR26","unstructured":"Dubb, L.: A likelihood model of gene family evolution. Ph.D. thesis, University of Washington, Seattle (2005)"},{"issue":"14","key":"18_CR27","doi-asserted-by":"publisher","first-page":"5714","DOI":"10.1073\/pnas.0806251106","volume":"106","author":"\u00d6 \u00c5kerborg","year":"2009","unstructured":"\u00c5kerborg, \u00d6., Sennblad, B., Arvestad, L., Lagergren, J.: Simultaneous Bayesian gene tree reconstruction and reconciliation analysis. Proc. Natl. Acad. Sci. U.S.A. 106(14), 5714\u20135719 (2009)","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"18_CR28","doi-asserted-by":"publisher","first-page":"21","DOI":"10.1016\/B978-1-4832-3211-9.50009-7","volume-title":"Mammalian Protein Metabolism","author":"TH Jukes","year":"1969","unstructured":"Jukes, T.H., Cantor, C.R.: Evolution of protein molecules. In: Munro, M.N. (ed.) Mammalian Protein Metabolism, vol. III, pp. 21\u2013132. Academic Press, New York (1969)"},{"issue":"2","key":"18_CR29","doi-asserted-by":"publisher","first-page":"160","DOI":"10.1007\/BF02101694","volume":"22","author":"M Hasegawa","year":"1985","unstructured":"Hasegawa, M., Kishino, H., Yano, T.-A.: Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22(2), 160\u2013174 (1985)","journal-title":"J. Mol. Evol."},{"key":"18_CR30","first-page":"57","volume":"17","author":"S Tavar\u00e9","year":"1986","unstructured":"Tavar\u00e9, S.: Some probabilistic and statistical problems in the analysis of DNA sequences. Lect. Math. Life Sci. 17, 57\u201386 (1986)","journal-title":"Lect. Math. Life Sci."},{"issue":"Suppl. 1","key":"18_CR31","doi-asserted-by":"publisher","first-page":"7","DOI":"10.1093\/bioinformatics\/btg1000","volume":"19","author":"L Arvestad","year":"2003","unstructured":"Arvestad, L., Berglund, A.-C., Lagergren, J., Sennblad, B.: Bayesian gene\/species tree reconciliation and orthology analysis using MCMC. Bioinformatics 19(Suppl. 1), 7\u201315 (2003)","journal-title":"Bioinformatics"},{"issue":"2","key":"18_CR32","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1145\/1502793.1502796","volume":"56","author":"L Arvestad","year":"2009","unstructured":"Arvestad, L., Lagergren, J., Sennblad, B.: The gene evolution model and computing its associated probabilities. J. ACM 56(2), 1\u201344 (2009)","journal-title":"J. ACM"},{"key":"18_CR33","volume-title":"Inferring Phylogenies","author":"J Felsenstein","year":"2003","unstructured":"Felsenstein, J.: Inferring Phylogenies, 2nd edn. Sinauer Associates, Sunderland (2003)","edition":"2"},{"issue":"2","key":"18_CR34","doi-asserted-by":"publisher","first-page":"356","DOI":"10.1093\/sysbio\/syu084","volume":"64","author":"T Flouri","year":"2015","unstructured":"Flouri, T., Izquierdo-Carrasco, F., Darriba, D., Aberer, A.J., Nguyen, L.-T., Minh, B.Q., Von Haeseler, A., Stamatakis, A.: The phylogenetic likelihood library. Syst. Biol. 64(2), 356\u2013362 (2015)","journal-title":"Syst. Biol."},{"issue":"1","key":"18_CR35","doi-asserted-by":"publisher","first-page":"26","DOI":"10.1109\/TCBB.2011.64","volume":"9","author":"J-P Doyon","year":"2012","unstructured":"Doyon, J.-P., Chauve, C., Hamel, S.: An efficient method for exploring the space of gene tree\/species tree reconciliations in a probabilistic framework. IEEE\/ACM Trans. Comput. Biol. Bioinform. 9(1), 26\u201339 (2012)","journal-title":"IEEE\/ACM Trans. Comput. Biol. Bioinform."},{"key":"18_CR36","doi-asserted-by":"crossref","unstructured":"Drosophila 12 Genomes Consortium: Evolution of genes and genomes on the Drosophila phylogeny. Nature 450(7167), 203\u2013218 (2007)","DOI":"10.1038\/nature06341"},{"issue":"1","key":"18_CR37","doi-asserted-by":"publisher","first-page":"36","DOI":"10.1093\/molbev\/msg236","volume":"21","author":"K Tamura","year":"2004","unstructured":"Tamura, K., Subramanian, S., Kumar, S.: Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks. Mol. Biol. Evol. 21(1), 36\u201344 (2004)","journal-title":"Mol. Biol. Evol."},{"issue":"11","key":"18_CR38","doi-asserted-by":"publisher","first-page":"197","DOI":"10.1371\/journal.pgen.0030197","volume":"3","author":"MW Hahn","year":"2007","unstructured":"Hahn, M.W., Han, M.V., Han, S.-G.: Gene family evolution across 12 Drosophila genomes. PLoS Genet. 3(11), 197 (2007)","journal-title":"PLoS Genet."},{"issue":"4","key":"18_CR39","doi-asserted-by":"crossref","first-page":"1161","DOI":"10.1093\/genetics\/132.4.1161","volume":"132","author":"SA Sawyer","year":"1992","unstructured":"Sawyer, S.A., Hartl, D.L.: Population genetics of polymorphism and divergence. Genetics 132(4), 1161\u20131176 (1992)","journal-title":"Genetics"},{"issue":"10","key":"18_CR40","doi-asserted-by":"publisher","first-page":"173","DOI":"10.1371\/journal.pgen.0020173","volume":"2","author":"DA Pollard","year":"2006","unstructured":"Pollard, D.A., Iyer, V.N., Moses, A.M., Eisen, M.B.: Widespread discordance of gene trees with species tree in Drosophila: evidence for incomplete lineage sorting. PLoS Genet. 2(10), 173 (2006)","journal-title":"PLoS Genet."},{"key":"18_CR41","doi-asserted-by":"publisher","first-page":"195","DOI":"10.1038\/nrg2526","volume":"10","author":"B Charlesworth","year":"2009","unstructured":"Charlesworth, B.: Fundamental concepts in genetics: effective population size and patterns of molecular evolution and variation. Nat. Rev. Genet. 10, 195\u2013205 (2009)","journal-title":"Nat. Rev. Genet."},{"issue":"5129","key":"18_CR42","doi-asserted-by":"publisher","first-page":"624","DOI":"10.1038\/217624a0","volume":"217","author":"M Kimura","year":"1968","unstructured":"Kimura, M.: Evolutionary rate at the molecular level. Nature 217(5129), 624\u201326 (1968)","journal-title":"Nature"},{"issue":"7123","key":"18_CR43","doi-asserted-by":"publisher","first-page":"82","DOI":"10.1038\/nature05388","volume":"445","author":"C Haag-Liautard","year":"2007","unstructured":"Haag-Liautard, C., Dorris, M., Maside, X., Macaskill, S., Halligan, D.L., Charlesworth, B., Keightley, P.D.: Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila. Nature 445(7123), 82\u201385 (2007)","journal-title":"Nature"},{"key":"18_CR44","first-page":"235","volume":"13","author":"A Rambaut","year":"1997","unstructured":"Rambaut, A., Grassly, N.C.: Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Comput. Appl. Biosci. 13, 235\u2013238 (1997)","journal-title":"Comput. Appl. Biosci."},{"issue":"21","key":"18_CR45","doi-asserted-by":"publisher","first-page":"2688","DOI":"10.1093\/bioinformatics\/btl446","volume":"22","author":"A Stamatakis","year":"2006","unstructured":"Stamatakis, A.: RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22(21), 2688\u20132690 (2006)","journal-title":"Bioinformatics"},{"key":"18_CR46","doi-asserted-by":"crossref","unstructured":"Bork, D., Cheng, R., Wang, J., Sung, J., Libeskind-Hadas, R.: On the computational complexity of the maximum parsimony reconciliation problem in the duplication-loss-coalescence model. Algorithm Mol. Biol. 12(6) (2017). https:\/\/almob.biomedcentral.com\/articles\/10.1186\/s13015-017-0098-8","DOI":"10.1186\/s13015-017-0098-8"},{"issue":"7247","key":"18_CR47","doi-asserted-by":"publisher","first-page":"657","DOI":"10.1038\/nature08064","volume":"459","author":"G Butler","year":"2009","unstructured":"Butler, G., Rasmussen, M.D., Lin, M.F., Santos, M.A.S., Sakthikumar, S., Munro, C.A., Rheinbay, E., Grabherr, M., Forche, A., Reedy, J.L., Agrafioti, I., Arnaud, M.B., Bates, S., Brown, A.J.P., Brunke, S., Costanzo, M.C., Fitzpatrick, D.A., de Groot, P.W.J., Harris, D., Hoyer, L.L., Hube, B., Klis, F.M., Kodira, C., Lennard, N., Logue, M.E., Martin, R., Neiman, A.M., Nikolaou, E., Quail, M.A., Quinn, J., Santos, M.C., Schmitzberger, F.F., Sherlock, G., Shah, P., Silverstein, K.A.T., Skrzypek, M.S., Soll, D., Staggs, R., Stansfield, I., Stumpf, M.P.H., Sudbery, P.E., Srikantha, T., Zeng, Q., Berman, J., Berriman, M., Heitman, J., Gow, N.A.R., Lorenz, M.C., Birren, B.W., Kellis, M., Cuomo, C.A.: Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Nature 459(7247), 657\u2013662 (2009)","journal-title":"Nature"},{"issue":"7158","key":"18_CR48","doi-asserted-by":"publisher","first-page":"54","DOI":"10.1038\/nature06107","volume":"449","author":"I Wapinski","year":"2007","unstructured":"Wapinski, I., Pfeffer, A., Friedman, N., Regev, A.: Natural history and evolutionary principles of gene duplication in fungi. Nature 449(7158), 54\u201361 (2007)","journal-title":"Nature"},{"issue":"27","key":"18_CR49","doi-asserted-by":"publisher","first-page":"9272","DOI":"10.1073\/pnas.0803466105","volume":"105","author":"M Lynch","year":"2008","unstructured":"Lynch, M., Sung, W., Morris, K., Coffey, N., Landry, C.R., Dopman, E.B., Dickinson, W.J., Okamoto, K., Kulkarni, S., Hartl, D.L., Thomas, W.K.: A genome-wide view of the spectrum of spontaneous mutations in yeast. Proc. Natl. Acad. Sci. U.S.A. 105(27), 9272\u20139277 (2008)","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"issue":"2","key":"18_CR50","doi-asserted-by":"publisher","first-page":"327","DOI":"10.1101\/gr.073585.107","volume":"19","author":"AJ Vilella","year":"2009","unstructured":"Vilella, A.J., Severin, J., Ureta-Vidal, A., Heng, L., Durbin, R., Birney, E.: EnsemblCompara GeneTrees: complete, duplication-aware phylogenetic trees in vertebrates. Genome Res. 19(2), 327\u2013335 (2009)","journal-title":"Genome Res."},{"issue":"8","key":"18_CR51","doi-asserted-by":"publisher","first-page":"1153","DOI":"10.1101\/gr.3567505","volume":"15","author":"MW Hahn","year":"2005","unstructured":"Hahn, M.W., De Bie, T., Stajich, J.E., Nguyen, C., Cristianini, N.: Estimating the tempo and mode of gene family evolution from comparative genomic data. Genome Res. 15(8), 1153\u20131160 (2005)","journal-title":"Genome Res."},{"issue":"2","key":"18_CR52","doi-asserted-by":"publisher","first-page":"323","DOI":"10.1101\/gr.141978.112","volume":"23","author":"B Boussau","year":"2013","unstructured":"Boussau, B., Sz\u00f6ll\u0151si, G.J., Duret, L., Gouy, M., Tannier, E., Daubin, V.: Genome-scale coestimation of species and gene trees. Genome Res. 23(2), 323\u2013330 (2013)","journal-title":"Genome Res."},{"issue":"5934","key":"18_CR53","doi-asserted-by":"publisher","first-page":"1561","DOI":"10.1126\/science.1171243","volume":"324","author":"K Liu","year":"2009","unstructured":"Liu, K., Raghavan, S., Nelesen, S., Linder, C.R., Warnow, T.: Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees. Science 324(5934), 1561\u20131564 (2009)","journal-title":"Science"}],"container-title":["Lecture Notes in Computer Science","Bioinformatics Research and Applications"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-59575-7_18","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,3,7]],"date-time":"2024-03-07T14:48:22Z","timestamp":1709822902000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-3-319-59575-7_18"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017]]},"ISBN":["9783319595740","9783319595757"],"references-count":53,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-59575-7_18","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2017]]},"assertion":[{"value":"31 May 2017","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}},{"value":"ISBRA","order":1,"name":"conference_acronym","label":"Conference Acronym","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"International Symposium on Bioinformatics Research and Applications","order":2,"name":"conference_name","label":"Conference Name","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Honolulu","order":3,"name":"conference_city","label":"Conference City","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"USA","order":4,"name":"conference_country","label":"Conference Country","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2017","order":5,"name":"conference_year","label":"Conference Year","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"29 May 2017","order":7,"name":"conference_start_date","label":"Conference Start Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2 June 2017","order":8,"name":"conference_end_date","label":"Conference End Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"13","order":9,"name":"conference_number","label":"Conference Number","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"isbra2017","order":10,"name":"conference_id","label":"Conference ID","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"http:\/\/alan.cs.gsu.edu\/isbra17\/","order":11,"name":"conference_url","label":"Conference URL","group":{"name":"ConferenceInfo","label":"Conference Information"}}]}}