{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,25]],"date-time":"2025-03-25T23:24:46Z","timestamp":1742945086884,"version":"3.40.3"},"publisher-location":"Cham","reference-count":16,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319595740"},{"type":"electronic","value":"9783319595757"}],"license":[{"start":{"date-parts":[[2017,1,1]],"date-time":"2017-01-01T00:00:00Z","timestamp":1483228800000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2017]]},"DOI":"10.1007\/978-3-319-59575-7_40","type":"book-chapter","created":{"date-parts":[[2017,5,30]],"date-time":"2017-05-30T09:14:49Z","timestamp":1496135689000},"page":"390-395","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":1,"title":["Evaluating the Impact of Encoding Schemes on Deep Auto-Encoders for DNA Annotation"],"prefix":"10.1007","author":[{"given":"Ning","family":"Yu","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Zeng","family":"Yu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Feng","family":"Gu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yi","family":"Pan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2017,5,31]]},"reference":[{"issue":"14","key":"40_CR1","doi-asserted-by":"publisher","first-page":"1744","DOI":"10.1093\/bioinformatics\/btm248","volume":"23","author":"X Wu","year":"2007","unstructured":"Wu, X., Cai, Z., Wan, X.-F., Hoang, T., Goebel, R., Lin, G.: Nucleotide composition string selection in HIV-1 subtyping using whole genomes. Bioinformatics 23(14), 1744\u20131752 (2007)","journal-title":"Bioinformatics"},{"key":"40_CR2","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"366","DOI":"10.1007\/978-3-319-19048-8_31","volume-title":"Bioinformatics Research and Applications","author":"N Yu","year":"2015","unstructured":"Yu, N., Guo, X., Gu, F., Pan, Y.: DNA AS X: an information-coding-based model to improve the sensitivity in comparative gene analysis. In: Harrison, R., Li, Y., M\u0103ndoiu, I. (eds.) ISBRA 2015. LNCS, vol. 9096, pp. 366\u2013377. Springer, Cham (2015). doi:10.1007\/978-3-319-19048-8_31"},{"key":"40_CR3","doi-asserted-by":"publisher","first-page":"279","DOI":"10.1186\/1471-2105-9-279","volume":"9","author":"J Wu","year":"2008","unstructured":"Wu, J., Wan, X.F., Xu, L., Lin, G., Cai, Z., Goebel, R.: Identifying a few foot-and-mouth disease virus signature nucleotide strings for computational genotyping. BMC Bioinform. 9, 279 (2008)","journal-title":"BMC Bioinform."},{"issue":"6","key":"40_CR4","first-page":"197","volume":"1","author":"A Nair","year":"2006","unstructured":"Nair, A., Sreenadhan, S.: A coding measure scheme employing electron-ion interaction pseudopotential (EIIP). Bioinformation 1(6), 197\u2013202 (2006)","journal-title":"Bioinformation"},{"doi-asserted-by":"crossref","unstructured":"Arniker, S.B., Kwan, H.K., Law, N.F., Lun, D.P.K.: DNA numerical representation and neural network based human promoter prediction system. In: 2011 Annual IEEE India Conference, pp. 1\u20134, December 2011","key":"40_CR5","DOI":"10.1109\/INDCON.2011.6139326"},{"issue":"16","key":"40_CR6","doi-asserted-by":"publisher","first-page":"2016","DOI":"10.1093\/bioinformatics\/btg273","volume":"19","author":"G Kauer","year":"2003","unstructured":"Kauer, G., Bl\u00f6cker, H.: Applying signal theory to the analysis of biomolecules. Bioinformatics 19(16), 2016\u20132021 (2003)","journal-title":"Bioinformatics"},{"issue":"333","key":"40_CR7","doi-asserted-by":"publisher","first-page":"143","DOI":"10.1016\/j.gene.2004.02.043","volume":"26","author":"K Jabbari","year":"2004","unstructured":"Jabbari, K., Bernardi, G.: Cytosine methylation and CpG, TpG (CpA) and TpA frequencies. Gene 26(333), 143\u2013149 (2004)","journal-title":"Gene"},{"unstructured":"Rosen, G.L.: Signal processing for bibiological-inspired gradient source localization and DNA sequence analysis. Ph.D. dissertation, Georgia Institute of Technology, School of Electrical and Computer Engineering, August 2006","key":"40_CR8"},{"issue":"5214","key":"40_CR9","doi-asserted-by":"publisher","first-page":"1158","DOI":"10.1126\/science.7761831","volume":"268","author":"G Hinton","year":"1995","unstructured":"Hinton, G., Dayan, P., Frey, B., Neal, R.: The \u201cwake-sleep\u201d algorithm for unsupervised neural networks. Science 268(5214), 1158\u20131161 (1995)","journal-title":"Science"},{"issue":"10","key":"40_CR10","doi-asserted-by":"publisher","first-page":"428","DOI":"10.1016\/j.tics.2007.09.004","volume":"11","author":"GE Hintonemail","year":"2007","unstructured":"Hintonemail, G.E.: Learning multiple layers of representation. Trends Cogn. Sci. 11(10), 428\u2013434 (2007)","journal-title":"Trends Cogn. Sci."},{"doi-asserted-by":"crossref","unstructured":"Deng, L., Hinton, G., Kingsbury, B.: New types of deep neural network learning for speech recognition and related applications: an overview. In: 2013 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), pp. 8599\u20138603, May 2013","key":"40_CR11","DOI":"10.1109\/ICASSP.2013.6639344"},{"issue":"8","key":"40_CR12","doi-asserted-by":"publisher","first-page":"1798","DOI":"10.1109\/TPAMI.2013.50","volume":"35","author":"Y Bengio","year":"2013","unstructured":"Bengio, Y., Courville, A., Vincent, P.: Representation learning: a review and new perspectives. IEEE Trans. Pattern Anal. Mach. Intell. 35(8), 1798\u20131828 (2013)","journal-title":"IEEE Trans. Pattern Anal. Mach. Intell."},{"issue":"19","key":"40_CR13","doi-asserted-by":"publisher","first-page":"2449","DOI":"10.1093\/bioinformatics\/bts475","volume":"28","author":"P Di Lena","year":"2012","unstructured":"Di Lena, P., Nagata, K., Baldi, P.: Deep architectures for protein contact map prediction. Bioinformatics 28(19), 2449\u20132457 (2012)","journal-title":"Bioinformatics"},{"issue":"23","key":"40_CR14","doi-asserted-by":"publisher","first-page":"3066","DOI":"10.1093\/bioinformatics\/bts598","volume":"28","author":"J Eickholt","year":"2012","unstructured":"Eickholt, J., Cheng, J.: Predicting protein residueresidue contacts using deep networks and boosting. Bioinformatics 28(23), 3066\u20133072 (2012)","journal-title":"Bioinformatics"},{"issue":"12","key":"40_CR15","doi-asserted-by":"publisher","first-page":"i121","DOI":"10.1093\/bioinformatics\/btu277","volume":"30","author":"MKK Leung","year":"2014","unstructured":"Leung, M.K.K., Xiong, H.Y., Lee, L.J., Frey, B.J.: Deep learning of the tissue-regulated splicing code. Bioinformatics 30(12), i121\u2013i129 (2014)","journal-title":"Bioinformatics"},{"issue":"3","key":"40_CR16","doi-asserted-by":"publisher","first-page":"311","DOI":"10.1089\/cmb.1997.4.311","volume":"4","author":"M Reese","year":"1997","unstructured":"Reese, M., Eeckman, F., Kulp, D., Haussler, D.: Improved splice site detection in genie. J. Comput. Biol. 4(3), 311\u2013323 (1997)","journal-title":"J. Comput. Biol."}],"container-title":["Lecture Notes in Computer Science","Bioinformatics Research and Applications"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-59575-7_40","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,3,7]],"date-time":"2024-03-07T14:49:50Z","timestamp":1709822990000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-3-319-59575-7_40"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017]]},"ISBN":["9783319595740","9783319595757"],"references-count":16,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-59575-7_40","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2017]]},"assertion":[{"value":"31 May 2017","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}},{"value":"ISBRA","order":1,"name":"conference_acronym","label":"Conference Acronym","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"International Symposium on Bioinformatics Research and Applications","order":2,"name":"conference_name","label":"Conference Name","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Honolulu","order":3,"name":"conference_city","label":"Conference City","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"USA","order":4,"name":"conference_country","label":"Conference Country","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2017","order":5,"name":"conference_year","label":"Conference Year","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"29 May 2017","order":7,"name":"conference_start_date","label":"Conference Start Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2 June 2017","order":8,"name":"conference_end_date","label":"Conference End Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"13","order":9,"name":"conference_number","label":"Conference Number","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"isbra2017","order":10,"name":"conference_id","label":"Conference ID","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"http:\/\/alan.cs.gsu.edu\/isbra17\/","order":11,"name":"conference_url","label":"Conference URL","group":{"name":"ConferenceInfo","label":"Conference Information"}}]}}