{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,25]],"date-time":"2025-03-25T18:44:07Z","timestamp":1742928247357,"version":"3.40.3"},"publisher-location":"Cham","reference-count":20,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319639628"},{"type":"electronic","value":"9783319639628"}],"license":[{"start":{"date-parts":[[2018,1,1]],"date-time":"2018-01-01T00:00:00Z","timestamp":1514764800000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018]]},"DOI":"10.1007\/978-3-319-63962-8_32-1","type":"book-chapter","created":{"date-parts":[[2018,3,14]],"date-time":"2018-03-14T05:53:29Z","timestamp":1521006809000},"page":"1-6","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":1,"title":["Big Data Technologies for DNA Sequencing"],"prefix":"10.1007","author":[{"given":"Lena","family":"Wiese","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Armin O.","family":"Schmitt","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mehmet","family":"G\u00fcltas","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2018,2,10]]},"reference":[{"key":"32-1_CR1","volume-title":"Pflanzenz\u00fcchtung","author":"H Becker","year":"2011","unstructured":"Becker H (2011) Pflanzenz\u00fcchtung. UTB basics. UTB GmbH"},{"issue":"3","key":"32-1_CR2","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0059190","volume":"8","author":"JK Bonfield","year":"2013","unstructured":"Bonfield JK, Mahoney MV (2013) Compression of FASTQ and SAM format sequencing data. PLoS One 8(3):e59190","journal-title":"PLoS One"},{"issue":"1","key":"32-1_CR3","doi-asserted-by":"publisher","first-page":"32","DOI":"10.1186\/s13742-016-0137-2","volume":"5","author":"MD Cao","year":"2016","unstructured":"Cao MD, Ganesamoorthy D, Elliott AG, Zhang H, Cooper MA, Coin LJ (2016) Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time minion tm sequencing. GigaScience 5(1):32","journal-title":"GigaScience"},{"issue":"3","key":"32-1_CR4","doi-asserted-by":"crossref","first-page":"203","DOI":"10.1089\/153871303769201851","volume":"1","author":"R Carlson","year":"2003","unstructured":"Carlson R (2003) The pace and proliferation of biological technologies. Biosecur Bioterror Biodefense Strategy Pract Sci 1(3):203\u2013214","journal-title":"Biosecur Bioterror Biodefense Strategy Pract Sci"},{"issue":"2","key":"32-1_CR5","doi-asserted-by":"publisher","first-page":"274","DOI":"10.1093\/bioinformatics\/btn582","volume":"25","author":"S Christley","year":"2008","unstructured":"Christley S, Lu Y, Li C, Xie X (2008) Human genomes as email attachments. Bioinformatics 25(2):274\u2013275","journal-title":"Bioinformatics"},{"issue":"6","key":"32-1_CR6","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0098146","volume":"9","author":"WC Chung","year":"2014","unstructured":"Chung WC, Chen CC, Ho JM, Lin CY, Hsu WL, Wang YC, Lee DT, Lai F, Huang CW, Chang YJ (2014) Clouddoe: a user-friendly tool for deploying Hadoop clouds and analyzing high-throughput sequencing data with MapReduce. PloS one 9(6):e98146","journal-title":"PloS one"},{"issue":"2","key":"32-1_CR7","doi-asserted-by":"publisher","first-page":"139","DOI":"10.1007\/s13222-017-0254-9","volume":"17","author":"S Dorok","year":"2017","unstructured":"Dorok S, Bre\u00df S, Teubner J, L\u00e4pple H, Saake G, Markl V (2017) Efficiently storing and analyzing genome data in database systems. Datenbank-Spektrum 17(2):139\u2013154","journal-title":"Datenbank-Spektrum"},{"key":"32-1_CR8","volume-title":"Biographdb: a new graphdb collecting heterogeneous data for bioinformatics analysis","author":"A Fiannaca","year":"2016","unstructured":"Fiannaca A, La Rosa M, La Paglia L, Messina A, Urso A (2016) Biographdb: a new graphdb collecting heterogeneous data for bioinformatics analysis. In: Proceedings of BIOTECHNO"},{"issue":"24","key":"32-1_CR9","doi-asserted-by":"publisher","first-page":"3107","DOI":"10.1093\/bioinformatics\/btt549","volume":"29","author":"CT Have","year":"2013","unstructured":"Have CT, Jensen LJ (2013) Are graph databases ready for bioinformatics? Bioinformatics 29(24):3107","journal-title":"Bioinformatics"},{"issue":"4","key":"32-1_CR10","doi-asserted-by":"publisher","first-page":"351","DOI":"10.1038\/nmeth.3290","volume":"12","author":"M Jain","year":"2015","unstructured":"Jain M, Fiddes IT, Miga KH, Olsen HE, Paten B, Akeson M (2015) Improved data analysis for the minion nanopore sequencer. Nat Methods 12(4):351\u2013356","journal-title":"Nat Methods"},{"issue":"4","key":"32-1_CR11","doi-asserted-by":"publisher","first-page":"303","DOI":"10.1038\/nmeth.3327","volume":"12","author":"NJ Loman","year":"2015","unstructured":"Loman NJ, Watson M (2015) Successful test launch for nanopore sequencing. Nat methods 12(4):303","journal-title":"Nat methods"},{"key":"32-1_CR12","first-page":"190","volume":"3","author":"H Mart\u00ednez","year":"2015","unstructured":"Mart\u00ednez H, Barrachina S, Castillo M, T\u00e1rraga J, Medina I, Dopazo J, Quintana-Ort\u00ed ES (2015) Scalable RNA sequencing onclusters of multicore processors. Trustcom\/BigDataSE\/ISPA 3:190\u2013195","journal-title":"Trustcom\/BigDataSE\/ISPA"},{"issue":"1","key":"32-1_CR13","doi-asserted-by":"publisher","first-page":"71","DOI":"10.1007\/s13353-015-0292-7","volume":"57","author":"M Mielczarek","year":"2016","unstructured":"Mielczarek M, Szyda J (2016) Review of alignment and SNP calling algorithms for next-generation sequencing data. J Appl Genet 57(1):71\u201379. \n            https:\/\/doi.org\/10.1007\/s13353-015-0292-7","journal-title":"J Appl Genet"},{"key":"32-1_CR14","doi-asserted-by":"crossref","unstructured":"Mushtaq H, Liu F, Costa C, Liu G, Hofstee P, Al-Ars Z (2017) Sparkga: a spark framework for cost effective, fast and accurate dna analysis at scale. In: Proceedings of the 8th ACM international conference on bioinformatics, computational biology, and health informatics. ACM, pp 148\u2013157","DOI":"10.1145\/3107411.3107438"},{"issue":"4","key":"32-1_CR15","doi-asserted-by":"publisher","first-page":"417","DOI":"10.1038\/nmeth.4197","volume":"14","author":"R Patro","year":"2017","unstructured":"Patro R, Duggal G, Love MI, Irizarry RA, Kingsford C (2017) Salmon provides fast and bias-aware quantification of transcript expression. Nat Methods 14(4):417\u2013419","journal-title":"Nat Methods"},{"key":"32-1_CR16","first-page":"265","volume-title":"Resource management for big data platforms","author":"E Pedersen","year":"2016","unstructured":"Pedersen E, Bongo LA (2016) Big biological data management. In: Pop F, Kolodziej J, Martino BD (eds) Resource management for big data platforms. Computer communications and networks. Springer, Heidelberg, pp 265\u2013277"},{"issue":"1","key":"32-1_CR17","doi-asserted-by":"publisher","first-page":"e27","DOI":"10.1093\/nar\/gks939","volume":"41","author":"N Popitsch","year":"2012","unstructured":"Popitsch N, von Haeseler A (2012) NGC: lossless and lossy compression of aligned high-throughput sequencing data. Nucleic Acids Res 41(1):e27\u2013e27","journal-title":"Nucleic Acids Res"},{"issue":"4","key":"32-1_CR18","doi-asserted-by":"publisher","first-page":"1245","DOI":"10.1109\/TCBB.2012.49","volume":"9","author":"J Salavert Torres","year":"2012","unstructured":"Salavert Torres J, Blanquer Espert I, Tomas Dominguez A, Hernendez V, Medina I, Terraga J, Dopazo J (2012) Using GPUs for the exact alignment of short-read genetic sequences by means of the burrows-wheeler transform. IEEE\/ACM Trans Comput Biol Bioinform (TCBB) 9(4):1245\u20131256","journal-title":"IEEE\/ACM Trans Comput Biol Bioinform (TCBB)"},{"issue":"7","key":"32-1_CR19","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pbio.1002195","volume":"13","author":"ZD Stephens","year":"2015","unstructured":"Stephens ZD, Lee SY, Faghri F, Campbell RH, Zhai C, Efron MJ, Iyer R, Schatz MC, Sinha S, Robinson GE (2015) Big data: astronomical or genomical? PLoS Biol 13(7):e1002195","journal-title":"PLoS Biol"},{"issue":"12","key":"32-1_CR20","doi-asserted-by":"publisher","first-page":"S1","DOI":"10.1186\/1471-2105-11-S12-S1","volume":"11","author":"RC Taylor","year":"2010","unstructured":"Taylor RC (2010) An overview of the hadoop\/mapreduce\/hbase framework and its current applications in bioinformatics. BMC Bioinform 11(12):S1","journal-title":"BMC Bioinform"}],"container-title":["Encyclopedia of Big Data Technologies"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-63962-8_32-1","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,10]],"date-time":"2019-05-10T02:31:39Z","timestamp":1557455499000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-319-63962-8_32-1"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018]]},"ISBN":["9783319639628","9783319639628"],"references-count":20,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-63962-8_32-1","relation":{},"subject":[],"published":{"date-parts":[[2018]]},"assertion":[{"value":"10 February 2018","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}}]}}