{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,27]],"date-time":"2025-03-27T06:32:11Z","timestamp":1743057131108,"version":"3.40.3"},"publisher-location":"Cham","reference-count":32,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319694580"},{"type":"electronic","value":"9783319694597"}],"license":[{"start":{"date-parts":[[2017,1,1]],"date-time":"2017-01-01T00:00:00Z","timestamp":1483228800000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2017]]},"DOI":"10.1007\/978-3-319-69459-7_23","type":"book-chapter","created":{"date-parts":[[2017,10,20]],"date-time":"2017-10-20T04:19:29Z","timestamp":1508473169000},"page":"337-352","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":3,"title":["An Extensible Ontology Modeling Approach Using Post Coordinated Expressions for Semantic Provenance in Biomedical Research"],"prefix":"10.1007","author":[{"given":"Joshua","family":"Valdez","sequence":"first","affiliation":[]},{"given":"Michael","family":"Rueschman","sequence":"additional","affiliation":[]},{"given":"Matthew","family":"Kim","sequence":"additional","affiliation":[]},{"given":"Sara","family":"Arabyarmohammadi","sequence":"additional","affiliation":[]},{"given":"Susan","family":"Redline","sequence":"additional","affiliation":[]},{"given":"Satya S.","family":"Sahoo","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2017,10,21]]},"reference":[{"key":"23_CR1","doi-asserted-by":"publisher","first-page":"612","DOI":"10.1038\/505612a","volume":"505","author":"FS Collins","year":"2014","unstructured":"Collins, F.S., Tabak, L.A.: Policy: NIH plans to enhance reproducibility. Nature 505, 612\u2013613 (2014)","journal-title":"Nature"},{"issue":"7419","key":"23_CR2","doi-asserted-by":"publisher","first-page":"187","DOI":"10.1038\/nature11556","volume":"490","author":"SC Landis","year":"2012","unstructured":"Landis, S.C., Amara, S.G., Asadullah, K., et al.: A call for transparent reporting to optimize the predictive value of preclinical research. Nature 490(7419), 187\u2013191 (2012)","journal-title":"Nature"},{"issue":"4","key":"23_CR3","doi-asserted-by":"publisher","first-page":"465","DOI":"10.5665\/sleep.2524","volume":"36","author":"S Redline","year":"2013","unstructured":"Redline, S., Dean III, D., Sanders, M.H.: Entering the era of \u201cBig Data\u201d: getting our metrics right. SLEEP 36(4), 465\u2013469 (2013)","journal-title":"SLEEP"},{"issue":"7604","key":"23_CR4","doi-asserted-by":"publisher","first-page":"452","DOI":"10.1038\/533452a","volume":"533","author":"M Baker","year":"2016","unstructured":"Baker, M.: 1,500 scientists lift the lid on reproducibility. Nature 533(7604), 452\u2013454 (2016)","journal-title":"Nature"},{"unstructured":"NIH: Principles and Guidelines for Reporting Preclinical Research (2016). https:\/\/www.nih.gov\/research-training\/rigor-reproducibility\/principles-guidelines-reporting-preclinical-research. Accessed 20 July 2017","key":"23_CR5"},{"unstructured":"Buneman, P., Davidson, S.: Data provenance - the foundation of data quality (2010)","key":"23_CR6"},{"unstructured":"Goble, C.: Position statement: musings on provenance, workflow and (semantic web) annotations for bioinformatics. In: Workshop on Data Derivation and Provenance, Chicago (2002)","key":"23_CR7"},{"issue":"4","key":"23_CR8","doi-asserted-by":"publisher","first-page":"46","DOI":"10.1109\/MIC.2008.86","volume":"12","author":"SS Sahoo","year":"2008","unstructured":"Sahoo, S.S., Sheth, A., Henson, C.: Semantic provenance for escience: managing the deluge of scientific data. IEEE Internet Comput. 12(4), 46\u201354 (2008)","journal-title":"IEEE Internet Comput."},{"unstructured":"Valdez, J., Kim, M., Rueschman, M., Socrates, V., Redline, S., Sahoo, S.S.: ProvCaRe semantic provenance knowledgebase: evaluating scientific reproducibility of research studies. Presented at the American Medical Informatics Association (AMIA) Annual Conference, Washington DC (2017)","key":"23_CR9"},{"issue":"5","key":"23_CR10","doi-asserted-by":"publisher","first-page":"463","DOI":"10.1002\/cpe.1231","volume":"20","author":"J Zhao","year":"2008","unstructured":"Zhao, J., Goble, C., Stevens, R., Turi, D.: Mining Taverna\u2019s semantic web of provenance. J. Concurr. Comput. Practice Exp. 20(5), 463\u2013472 (2008)","journal-title":"J. Concurr. Comput. Practice Exp."},{"issue":"3","key":"23_CR11","doi-asserted-by":"publisher","first-page":"31","DOI":"10.1145\/1084805.1084812","volume":"34","author":"YL Simmhan","year":"2005","unstructured":"Simmhan, Y.L., Plale, A.B., Gannon, A.D.: A survey of data provenance in e-science. SIGMOD Rec. 34(3), 31\u201336 (2005)","journal-title":"SIGMOD Rec."},{"issue":"6","key":"23_CR12","first-page":"743","volume":"27","author":"L Moreau","year":"2010","unstructured":"Moreau, L., Clifford, B., Freire, J., et al.: The open provenance model core specification (v1.1). Future Gener. Comput. Syst. 27(6), 743\u2013756 (2010)","journal-title":"Comput. Syst."},{"unstructured":"Hitzler, P., Kr\u00f6tzsch, M., Parsia, B., Patel-Schneider, P.F., Rudolph, S.: OWL 2 Web Ontology Language Primer. In: W3C Recommendation. World Wide Web Consortium W3C (2009)","key":"23_CR13"},{"unstructured":"Sahoo, S.S., Sheth, A.: Provenir ontology: towards a framework for eScience provenance management. Presented at the Microsoft eScience Workshop, Pittsburgh, USA, October 2009","key":"23_CR14"},{"unstructured":"Moreau, L., Missier, P.: PROV Data Model (PROV-DM). In: W3C Recommendation. World Wide Web Consortium W3C (2013)","key":"23_CR15"},{"unstructured":"Lebo, T., Sahoo, S.S., McGuinness, D.; PROV-O: the PROV ontology. In: W3C Recommendation. World Wide Web Consortium W3C (2013)","key":"23_CR16"},{"unstructured":"Cheney, J., Missier, P., Moreau, L.: Constraints of the PROV data model. In: W3C Recommendation. World Wide Web Consortium W3C (2013)","key":"23_CR17"},{"issue":"5","key":"23_CR18","doi-asserted-by":"publisher","first-page":"1151","DOI":"10.5665\/sleep.5774","volume":"39","author":"DA Dean","year":"2016","unstructured":"Dean, D.A., Goldberger, A.L., Mueller, R., Kim, M., et al.: Scaling up scientific discovery in sleep medicine: the National Sleep Research Resource. SLEEP 39(5), 1151\u20131164 (2016)","journal-title":"SLEEP"},{"unstructured":"Cyganiak, R., Wood, D., Lanthaler, M.: RDF 1.1 concepts and abstract syntax. In: W3C Recommendation, World Wide Web Consortium (W3C) (2014)","key":"23_CR19"},{"issue":"2","key":"23_CR20","doi-asserted-by":"publisher","first-page":"199","DOI":"10.1016\/j.jbi.2011.10.002","volume":"45","author":"A Rector","year":"2012","unstructured":"Rector, A., Luigi, I.: Lexically suggest, logically define: quality assurance of the use of qualifiers and expected results of post-coordination in SNOMED CT. J. Biomed. Inform. 45(2), 199\u2013209 (2012)","journal-title":"J. Biomed. Inform."},{"issue":"2","key":"23_CR21","doi-asserted-by":"publisher","first-page":"190","DOI":"10.1136\/amiajnl-2011-000523","volume":"19","author":"MA Musen","year":"2012","unstructured":"Musen, M.A., Noy, N.F., Shah, N.H., Whetzel, P.L., Chute, C.G., Story, M.A., Smith, B.: NCBO team: The national center for biomedical ontology. J. Am. Med. Inform. Assoc. 19(2), 190\u2013195 (2012)","journal-title":"J. Am. Med. Inform. Assoc."},{"key":"23_CR22","doi-asserted-by":"publisher","first-page":"966","DOI":"10.1093\/nar\/gkt1026","volume":"42","author":"S K\u00f6hler","year":"2014","unstructured":"K\u00f6hler, S., Doelken, S.C., Mungall, C.J., et al.: The human phenotype ontology project: linking molecular biology and disease through phenotype data. Nucleic Acids Res. 42, 966\u2013974 (2014). Database Issue","journal-title":"Nucleic Acids Res."},{"key":"23_CR23","first-page":"7","volume":"5","author":"K Giannangelo","year":"2008","unstructured":"Giannangelo, K., Fenton, S.: SNOMED CT survey: an assessment of implementation in EMR\/EHR applications. Perspect Health Inf. Manag. 5, 7 (2008)","journal-title":"Perspect Health Inf. Manag."},{"issue":"3","key":"23_CR24","doi-asserted-by":"publisher","first-page":"256","DOI":"10.1093\/bib\/bbl027","volume":"7","author":"O Bodenreider","year":"2006","unstructured":"Bodenreider, O., Stevens, R.: Bio-ontologies: current trends and future directions. Brief. Bioinform. 7(3), 256\u2013274 (2006)","journal-title":"Brief. Bioinform."},{"key":"23_CR25","doi-asserted-by":"publisher","first-page":"78","DOI":"10.1016\/j.jbi.2013.11.002","volume":"52","author":"I Sim","year":"2014","unstructured":"Sim, I., Tu, S.W., Carini, S., Lehmann, H.P., Pollock, B.H., Peleg, M., Wittkowski, K.M.: The ontology of clinical research (OCRe): an informatics foundation for the science of clinical research. J. Biomed. Inform. 52, 78\u201391 (2014)","journal-title":"J. Biomed. Inform."},{"issue":"2","key":"23_CR26","doi-asserted-by":"publisher","first-page":"239","DOI":"10.1016\/j.jbi.2010.09.007","volume":"44","author":"SW Tu","year":"2011","unstructured":"Tu, S.W., Peleg, M., Carini, S., Bobak, M., Ross, J., Rubin, D., Sim, I.: A practical method for transforming free-text eligibility criteria into computable criteria. J. Biomed. Inform. 44(2), 239\u2013250 (2011)","journal-title":"J. Biomed. Inform."},{"issue":"4","key":"23_CR27","doi-asserted-by":"publisher","first-page":"e0154556","DOI":"10.1371\/journal.pone.0154556","volume":"11","author":"A Bandrowski","year":"2016","unstructured":"Bandrowski, A., Brinkman, R., Brochhausen, M., et al.: The ontology for biomedical investigations. Plos One 11(4), e0154556 (2016)","journal-title":"Plos One"},{"unstructured":"Huang, X., Lin, J., Demner-Fushman, D.: Evaluation of PICO as a knowledge representation for clinical questions. Presented at the AMIA Annual Symposium Proceedings (2006)","key":"23_CR28"},{"unstructured":"Overell, P.: Augmented BNF for Syntax Specifications: ABNF. https:\/\/tools.ietf.org\/html\/rfc5234. Accessed 20 Aug 2017","key":"23_CR29"},{"doi-asserted-by":"crossref","unstructured":"Hearst, M.A.: Untangling text data mining. In: 37th the Association for Computational Linguistics on Computational Linguistics meeting, pp. 3\u201310 (1999)","key":"23_CR30","DOI":"10.3115\/1034678.1034679"},{"unstructured":"Rindflesch, T.C., Pakhomov, S.V., Fiszman, M., Kilicoglu, H., Sanchez, V.R.: Medical facts to support inferencing in natural language processing. Presented at the AMIA Annual Symposium Proceedings (2005)","key":"23_CR31"},{"issue":"12","key":"23_CR32","doi-asserted-by":"publisher","first-page":"1159","DOI":"10.1164\/rccm.200712-1809OC","volume":"179","author":"GT O\u2019Connor","year":"2009","unstructured":"O\u2019Connor, G.T., Caffo, B., Newman, A.B., Quan, S.F., Rapoport, D.M., Redline, S., Resnick, H.E., Samet, J., Shahar, E.: Prospective study of sleep-disordered breathing and hypertension: the sleep heart health study. Am. J. Respir. Crit. Care Med. 179(12), 1159\u20131164 (2009)","journal-title":"Am. J. Respir. Crit. Care Med."}],"container-title":["Lecture Notes in Computer Science","On the Move to Meaningful Internet Systems. OTM 2017 Conferences"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-69459-7_23","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,3,7]],"date-time":"2024-03-07T13:43:32Z","timestamp":1709819012000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-3-319-69459-7_23"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017]]},"ISBN":["9783319694580","9783319694597"],"references-count":32,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-69459-7_23","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2017]]},"assertion":[{"value":"21 October 2017","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}},{"value":"OTM","order":1,"name":"conference_acronym","label":"Conference Acronym","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"OTM Confederated International Conferences \"On the Move to Meaningful Internet Systems\"","order":2,"name":"conference_name","label":"Conference Name","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Rhodes","order":3,"name":"conference_city","label":"Conference City","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Greece","order":4,"name":"conference_country","label":"Conference Country","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2017","order":5,"name":"conference_year","label":"Conference Year","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"23 October 2017","order":7,"name":"conference_start_date","label":"Conference Start Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"28 October 2017","order":8,"name":"conference_end_date","label":"Conference End Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"otm2017","order":10,"name":"conference_id","label":"Conference ID","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"http:\/\/www.otmconferences.org\/","order":11,"name":"conference_url","label":"Conference URL","group":{"name":"ConferenceInfo","label":"Conference Information"}}]}}