{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,27]],"date-time":"2025-03-27T08:29:05Z","timestamp":1743064145185,"version":"3.40.3"},"publisher-location":"Cham","reference-count":27,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319700861"},{"type":"electronic","value":"9783319700878"}],"license":[{"start":{"date-parts":[[2017,1,1]],"date-time":"2017-01-01T00:00:00Z","timestamp":1483228800000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2017]]},"DOI":"10.1007\/978-3-319-70087-8_65","type":"book-chapter","created":{"date-parts":[[2017,10,23]],"date-time":"2017-10-23T21:10:19Z","timestamp":1508793019000},"page":"628-638","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":7,"title":["A Hybrid Evolutionary Algorithm for Protein Structure Prediction Using the Face-Centered Cubic Lattice Model"],"prefix":"10.1007","author":[{"given":"Daniel","family":"Varela","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jos\u00e9","family":"Santos","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2017,10,24]]},"reference":[{"key":"65_CR1","volume-title":"Protein Structure Prediction. Concepts and Applications","author":"A Tramontano","year":"2006","unstructured":"Tramontano, A.: Protein Structure Prediction. Concepts and Applications. Wiley-VCH, Weinheim (2006)"},{"issue":"96","key":"65_CR2","doi-asserted-by":"publisher","first-page":"223","DOI":"10.1126\/science.181.4096.223","volume":"181","author":"C Anfinsen","year":"1973","unstructured":"Anfinsen, C.: Principles that govern the folding of proteins. Science 181(96), 223\u2013230 (1973)","journal-title":"Science"},{"key":"65_CR3","unstructured":"Rosetta system. http:\/\/www.rosettacommons.org"},{"key":"65_CR4","doi-asserted-by":"publisher","first-page":"1029","DOI":"10.1016\/j.asoc.2007.03.012","volume":"8","author":"X Zhao","year":"2008","unstructured":"Zhao, X.: Advances on protein folding simulations based on the lattice HP models with natural computing. Appl. Soft Comput. 8, 1029\u20131040 (2008)","journal-title":"Appl. Soft Comput."},{"key":"65_CR5","doi-asserted-by":"publisher","first-page":"7133","DOI":"10.1021\/bi00483a001","volume":"29","author":"K Dill","year":"1990","unstructured":"Dill, K.: Dominant forces in protein folding. Biochemistry 29, 7133\u20137155 (1990)","journal-title":"Biochemistry"},{"issue":"1","key":"65_CR6","doi-asserted-by":"publisher","first-page":"75","DOI":"10.1006\/jmbi.1993.1258","volume":"231","author":"R Unger","year":"1993","unstructured":"Unger, R., Moult, J.: Genetic algorithms for protein folding simulations. J. Mol. Biol. 231(1), 75\u201381 (1993)","journal-title":"J. Mol. Biol."},{"key":"65_CR7","unstructured":"Patton, W., Punch, W., Goldman, E.: A standard genetic algorithm approach to native protein conformation prediction. In: Proceedings of 6th International Conference on Genetic Algorithms, pp. 574\u2013581 (1995)"},{"key":"65_CR8","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"769","DOI":"10.1007\/3-540-45712-7_74","volume-title":"Parallel Problem Solving from Nature \u2013 PPSN VII","author":"N Krasnogor","year":"2002","unstructured":"Krasnogor, N., Blackburne, B.P., Burke, E.K., Hirst, J.D.: Multimeme algorithms for protein structure prediction. In: Guerv\u00f3s, J.J.M., Adamidis, P., Beyer, H.G., Schwefel, H.P., Fern\u00e1ndez-Villaca\u00f1as, J.L. (eds.) PPSN 2002. LNCS, vol. 2439, pp. 769\u2013778. Springer, Heidelberg (2002). doi:10.1007\/3-540-45712-7_74"},{"key":"65_CR9","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"323","DOI":"10.1007\/978-3-642-21344-1_34","volume-title":"Foundations on Natural and Artificial Computation","author":"J Santos","year":"2011","unstructured":"Santos, J., Di\u00e9guez, M.: Differential evolution for protein structure prediction using the HP model. In: Ferr\u00e1ndez, J.M., \u00c1lvarez S\u00e1nchez, J.R., de la Paz, F., Toledo, F.J. (eds.) IWINAC 2011. LNCS, vol. 6686, pp. 323\u2013333. Springer, Heidelberg (2011). doi:10.1007\/978-3-642-21344-1_34"},{"key":"65_CR10","doi-asserted-by":"crossref","unstructured":"Garza-Fabre, M., Toscano-Pulido, G., Rodriguez-Tello, E.: Handling constraints in the HP model for protein structure prediction by multiobjective optimization. In: Proceedings of the IEEE Congress on Evolutionary Computation, pp. 2728\u20132735 (2013)","DOI":"10.1109\/CEC.2013.6557899"},{"issue":"1","key":"65_CR11","doi-asserted-by":"publisher","first-page":"101","DOI":"10.1109\/TEVC.2006.880328","volume":"11","author":"V Cutello","year":"2007","unstructured":"Cutello, V., Nicosia, G., Pavone, M., Timmis, J.: An immune algorithm for protein structure prediction on lattice models. IEEE Trans. Evol. Comput. 11(1), 101\u2013117 (2007)","journal-title":"IEEE Trans. Evol. Comput."},{"key":"65_CR12","first-page":"30","volume":"6","author":"A Shmygelska","year":"2005","unstructured":"Shmygelska, A., Hoos, H.: An ant colony optimisation algorithm for the 2D and 3D hydrophobic polar protein folding problem. Bioinformatics 6, 30 (2005)","journal-title":"Bioinformatics"},{"key":"65_CR13","doi-asserted-by":"crossref","unstructured":"Olson, B., De-Jong, K., Shehu, A.: Off-lattice protein structure prediction with homologous crossover. In: Proceedings Conference on Genetic and evolutionary computation - GECCO 2013, pp. 287\u2013294 (2013)","DOI":"10.1145\/2463372.2463407"},{"key":"65_CR14","series-title":"Natural Computing Series","doi-asserted-by":"publisher","DOI":"10.1007\/3-540-31306-0","volume-title":"Differential Evolution. A Practical Approach to Global Optimization","author":"K Price","year":"2005","unstructured":"Price, K., Storn, R.M., Lampinen, J.A.: Differential Evolution. A Practical Approach to Global Optimization. Natural Computing Series. Springer, Heidelberg (2005). doi:10.1007\/3-540-31306-0"},{"issue":"6","key":"65_CR15","doi-asserted-by":"publisher","first-page":"904","DOI":"10.1007\/s11390-007-9097-4","volume":"22","author":"H Lopes","year":"2007","unstructured":"Lopes, H., Bitello, R.: Differential evolution approach for protein folding using a lattice model. J. Comput. Sci. Technol. 22(6), 904\u2013908 (2007)","journal-title":"J. Comput. Sci. Technol."},{"key":"65_CR16","doi-asserted-by":"publisher","DOI":"10.1007\/978-1-4757-6568-7","volume-title":"Sphere Packings, Lattices and Groups","author":"J Conway","year":"1998","unstructured":"Conway, J., Sloane, N.J.A.: Sphere Packings, Lattices and Groups. Springer, New York (1998). doi:10.1007\/978-1-4757-6568-7"},{"issue":"6","key":"65_CR17","doi-asserted-by":"publisher","first-page":"1620","DOI":"10.1109\/TCBB.2011.41","volume":"8","author":"I Dotu","year":"2011","unstructured":"Dotu, I., Cebri\u00e1n, M., Hentenryck, P.V., Clote, P.: On lattice protein structure prediction revisited. IEEE\/ACM Trans. Comput. Biol. Bioinf. 8(6), 1620\u20131632 (2011)","journal-title":"IEEE\/ACM Trans. Comput. Biol. Bioinf."},{"key":"65_CR18","doi-asserted-by":"crossref","unstructured":"Shatabda, S., Newton, M., Pham, D., Sattar, A.: Memory-based local search for simplified protein structure prediction. In: Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine - BCB 2012, pp. 345\u2013352 (2012)","DOI":"10.1145\/2382936.2382980"},{"key":"65_CR19","doi-asserted-by":"crossref","unstructured":"Shatabda, S., Newton, M., Sattar, A.: Mixed heuristic local search for protein structure prediction. In: Proceedings of the Twenty-Seventh AAAI Conference on Artificial Intelligence, pp. 867\u2013882 (2013)","DOI":"10.1609\/aaai.v27i1.8602"},{"key":"65_CR20","doi-asserted-by":"crossref","unstructured":"Rashid, M., Newton, M., Hoque, M., Sattar, A.: A local search embedded genetic algorithm for simplified protein structure prediction. In: Proceedings IEEE Congress on Evolutionary Computation - IEEE-CEC 2013, pp. 1091\u20131098 (2013)","DOI":"10.1109\/CEC.2013.6557688"},{"key":"65_CR21","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"107","DOI":"10.1007\/978-3-642-35101-3_10","volume-title":"AI 2012: Advances in Artificial Intelligence","author":"MA Rashid","year":"2012","unstructured":"Rashid, M.A., Hoque, M.T., Newton, M.A.H., Pham, D.N., Sattar, A.: A new genetic algorithm for simplified protein structure prediction. In: Thielscher, M., Zhang, D. (eds.) AI 2012. LNCS, vol. 7691, pp. 107\u2013119. Springer, Berlin, Heidelberg (2012). doi:10.1007\/978-3-642-35101-3_10"},{"key":"65_CR22","doi-asserted-by":"crossref","unstructured":"Shatabda, S., Newton, M., Rashid, M., Sattar, A.: An efficient encoding for simplified protein structure prediction using genetic algorithms. In: Proceedings of the IEEE Congress on Evolutionary Computation - IEEE-CEC 2013, pp. 1217\u20131224 (2013)","DOI":"10.1109\/CEC.2013.6557704"},{"key":"65_CR23","doi-asserted-by":"publisher","first-page":"S19","DOI":"10.1186\/1477-5956-11-S1-S19","volume":"11","author":"J Tsay","year":"2013","unstructured":"Tsay, J., Su, S.: An effective evolutionary algorithm for protein folding on 3D FCC HP model by lattice rotation and generalized move sets. Prot. Sci. 11, S19 (2013)","journal-title":"Prot. Sci."},{"issue":"1","key":"65_CR24","doi-asserted-by":"publisher","first-page":"5","DOI":"10.1007\/s10601-006-6848-8","volume":"11","author":"R Backofen","year":"2006","unstructured":"Backofen, R., Will, S.: A constraint-based approach to fast and exact structure prediction in three-dimensional protein models. Constraints 11(1), 5\u201330 (2006)","journal-title":"Constraints"},{"key":"65_CR25","unstructured":"Backofen, R., Will, S., Clote, P.: Algorithmic approach to quantifying the hydrophobic force contribution in protein folding. In: Proceedings of the Pacific Symposium on Biocomputing, pp. 92\u2013103. Citeseer (2000)"},{"key":"65_CR26","unstructured":"Krasnogor, N., Hart, W., Smith, J., Pelta, D.: Protein structure prediction with evolutionary algorithms. In: Proceedings of the Genetic and Evolutionary Computation Conference - GECCO 1999, pp. 1596\u20131601 (1999)"},{"key":"65_CR27","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"5","DOI":"10.1007\/3-540-58484-6_245","volume-title":"Parallel Problem Solving from Nature \u2013 PPSN III","author":"D Whitley","year":"1994","unstructured":"Whitley, D., Gordon, V.S., Mathias, K.: Lamarckian evolution, the Baldwin effect and function optimization. In: Davidor, Y., Schwefel, H.P., M\u00e4nner, R. (eds.) PPSN 1994. LNCS, vol. 866, pp. 5\u201315. Springer, Berlin, Heidelberg (1994). doi:10.1007\/3-540-58484-6_245"}],"container-title":["Lecture Notes in Computer Science","Neural Information Processing"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-70087-8_65","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,3,13]],"date-time":"2024-03-13T15:23:07Z","timestamp":1710343387000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-3-319-70087-8_65"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017]]},"ISBN":["9783319700861","9783319700878"],"references-count":27,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-70087-8_65","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2017]]},"assertion":[{"value":"24 October 2017","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}},{"value":"ICONIP","order":1,"name":"conference_acronym","label":"Conference Acronym","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"International Conference on Neural Information Processing","order":2,"name":"conference_name","label":"Conference Name","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Guangzhou","order":3,"name":"conference_city","label":"Conference City","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"China","order":4,"name":"conference_country","label":"Conference Country","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2017","order":5,"name":"conference_year","label":"Conference Year","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"14 November 2017","order":7,"name":"conference_start_date","label":"Conference Start Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"18 November 2017","order":8,"name":"conference_end_date","label":"Conference End Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"24","order":9,"name":"conference_number","label":"Conference Number","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"iconip2017","order":10,"name":"conference_id","label":"Conference ID","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"http:\/\/www.iconip2017.org\/index.html","order":11,"name":"conference_url","label":"Conference URL","group":{"name":"ConferenceInfo","label":"Conference Information"}}]}}