{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,25]],"date-time":"2025-03-25T14:45:43Z","timestamp":1742913943419,"version":"3.40.3"},"publisher-location":"Cham","reference-count":13,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319787220"},{"type":"electronic","value":"9783319787237"}],"license":[{"start":{"date-parts":[[2018,1,1]],"date-time":"2018-01-01T00:00:00Z","timestamp":1514764800000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018]]},"DOI":"10.1007\/978-3-319-78723-7_20","type":"book-chapter","created":{"date-parts":[[2018,3,27]],"date-time":"2018-03-27T05:16:28Z","timestamp":1522127788000},"page":"235-244","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":2,"title":["A Graph-Based Approach for Querying Protein-Ligand Structural Patterns"],"prefix":"10.1007","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-6740-9711","authenticated-orcid":false,"given":"Renzo","family":"Angles","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mauricio","family":"Arenas","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2018,3,28]]},"reference":[{"key":"20_CR1","volume-title":"Molecular Biology of the Cell","author":"B Alberts","year":"2002","unstructured":"Alberts, B., Johnson, A., Lewis, J., Raff, M., Roberts, K., Walter, P.: Molecular Biology of the Cell, 4th edn. Garland Science, New York (2002)","edition":"4"},{"issue":"11","key":"20_CR2","doi-asserted-by":"publisher","first-page":"1069","DOI":"10.1007\/s10822-014-9783-6","volume":"28","author":"M Arenas-Salinas","year":"2014","unstructured":"Arenas-Salinas, M., Ortega-Salazar, S., Gonzales-Nilo, F., Pohl, E., Holmes, D.S., Quatrini, R.: AFAL: a web service for profiling amino acids surrounding ligands in proteins. J. Comput. Aided Mol. Des. 28(11), 1069\u20131076 (2014)","journal-title":"J. Comput. Aided Mol. Des."},{"key":"20_CR3","unstructured":"Berg, J.M., Tymoczko, J.L., Stryer, L.: Protein structure and function. In: Biochemistry, 5th edn. W. H. Freeman (2002)"},{"issue":"2","key":"20_CR4","doi-asserted-by":"publisher","first-page":"144","DOI":"10.3390\/ijms17020144","volume":"17","author":"X Du","year":"2016","unstructured":"Du, X., Li, Y., Xia, Y.L., Ai, S.M., Liang, J., Sang, P., Ji, X.L., Liu, S.Q.: Insights into protein-ligand interactions: mechanisms, models, and methods. Int. J. Mol. Sci. 17(2), 144 (2016)","journal-title":"Int. J. Mol. Sci."},{"issue":"1","key":"20_CR5","doi-asserted-by":"publisher","first-page":"337","DOI":"10.1093\/nar\/gkx333","volume":"45","author":"R Fahrrolfes","year":"2017","unstructured":"Fahrrolfes, R., Bietz, S., Flachsenberg, F., Meyder, A., Nittinger, E., Otto, T., Volkamer, A., Rarey, M.: ProteinsPlus: a web portal for structure analysis of macromolecules. Nucleic Acids Res. 45(1), 337\u2013343 (2017)","journal-title":"Nucleic Acids Res."},{"issue":"4","key":"20_CR6","doi-asserted-by":"publisher","first-page":"625","DOI":"10.1007\/PL00000885","volume":"58","author":"S Iuchi","year":"2001","unstructured":"Iuchi, S.: Three classes of C2H2 zinc finger proteins. Cell. Mol. Life Sci. 58(4), 625\u2013635 (2001)","journal-title":"Cell. Mol. Life Sci."},{"key":"20_CR7","doi-asserted-by":"publisher","first-page":"995","DOI":"10.1038\/nrm2281","volume":"8","author":"D Lee","year":"2007","unstructured":"Lee, D., Redfern, O., Orengo, C.: Predicting protein function from sequence and structure. Nat. Rev. Mol. Cell Biol. 8, 995\u20131005 (2007)","journal-title":"Nat. Rev. Mol. Cell Biol."},{"key":"20_CR8","doi-asserted-by":"publisher","first-page":"4","DOI":"10.1186\/s13040-015-0038-4","volume":"8","author":"P Meysman","year":"2015","unstructured":"Meysman, P., Zhou, C., Cule, B., Goethals, B., Laukens, K.: Mining the entire Protein DataBank for frequent spatially cohesive amino acid patterns. BioData Min. 8, 4 (2015)","journal-title":"BioData Min."},{"issue":"1","key":"20_CR9","doi-asserted-by":"publisher","first-page":"267","DOI":"10.1002\/prot.21933","volume":"72","author":"R Minai","year":"2008","unstructured":"Minai, R., Matsuo, Y., Onuki, H., Hirot, H.: Method for comparing the structures of protein ligand-binding sites and application for predicting protein drug interactions. Proteins 72(1), 267\u2013381 (2008)","journal-title":"Proteins"},{"key":"20_CR10","series-title":"Methods in Molecular Biology (Methods and Protocols)","doi-asserted-by":"publisher","first-page":"3","DOI":"10.1007\/978-1-62703-398-5_1","volume-title":"Protein-Ligand Interactions","author":"MA Williams","year":"2013","unstructured":"Williams, M.A.: Protein-ligand interactions: fundamentals. In: Williams, M., Daviter, T. (eds.) Protein-Ligand Interactions. Methods in Molecular Biology (Methods and Protocols), vol. 1008, pp. 3\u201334. Humana Press, Totowa (2013). https:\/\/doi.org\/10.1007\/978-1-62703-398-5_1"},{"issue":"17","key":"20_CR11","doi-asserted-by":"publisher","first-page":"2517","DOI":"10.2174\/092986711795933731","volume":"18","author":"T Mavromoustakos","year":"2011","unstructured":"Mavromoustakos, T., Durdagi, S., Koukoulitsa, C., Simcic, M., Papadopoulos, M.G., Hodoscek, M., Golic Grdadolnik, S.: Strategies in the rational drug design. Curr. Med. Chem. 18(17), 2517\u20132530 (2011)","journal-title":"Curr. Med. Chem."},{"issue":"9","key":"20_CR12","doi-asserted-by":"publisher","first-page":"901","DOI":"10.2174\/1568026615666150825142002","volume":"16","author":"T Wang","year":"2016","unstructured":"Wang, T., Wu, M.B., Zhang, R.H., Chen, Z.J., Hua, C., Lin, J.P., Yang, L.R.: Advances in computational structure-based drug design and application in drug discovery. Curr. Top. Med. Chem. 16(9), 901\u2013916 (2016)","journal-title":"Curr. Top. Med. Chem."},{"issue":"1","key":"20_CR13","doi-asserted-by":"publisher","first-page":"235","DOI":"10.1093\/nar\/28.1.235","volume":"28","author":"HM Berman","year":"2000","unstructured":"Berman, H.M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T.N., Weissig, H., Shindyalov, I.N., Bourne, P.E.: The protein data bank. Nucleic Acids Res. 28(1), 235\u2013242 (2000)","journal-title":"Nucleic Acids Res."}],"container-title":["Lecture Notes in Computer Science","Bioinformatics and Biomedical Engineering"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-78723-7_20","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,3,7]],"date-time":"2024-03-07T15:16:58Z","timestamp":1709824618000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-3-319-78723-7_20"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018]]},"ISBN":["9783319787220","9783319787237"],"references-count":13,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-78723-7_20","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2018]]},"assertion":[{"value":"28 March 2018","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}},{"value":"IWBBIO","order":1,"name":"conference_acronym","label":"Conference Acronym","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"International Conference on Bioinformatics and Biomedical Engineering","order":2,"name":"conference_name","label":"Conference Name","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Granada","order":3,"name":"conference_city","label":"Conference City","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Spain","order":4,"name":"conference_country","label":"Conference Country","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2018","order":5,"name":"conference_year","label":"Conference Year","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"25 April 2018","order":7,"name":"conference_start_date","label":"Conference Start Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"27 April 2018","order":8,"name":"conference_end_date","label":"Conference End Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"6","order":9,"name":"conference_number","label":"Conference Number","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"iwbbio2018","order":10,"name":"conference_id","label":"Conference ID","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"http:\/\/iwbbio.ugr.es\/","order":11,"name":"conference_url","label":"Conference URL","group":{"name":"ConferenceInfo","label":"Conference Information"}}]}}