{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,25]],"date-time":"2025-03-25T14:45:51Z","timestamp":1742913951183,"version":"3.40.3"},"publisher-location":"Cham","reference-count":15,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319787220"},{"type":"electronic","value":"9783319787237"}],"license":[{"start":{"date-parts":[[2018,1,1]],"date-time":"2018-01-01T00:00:00Z","timestamp":1514764800000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018]]},"DOI":"10.1007\/978-3-319-78723-7_37","type":"book-chapter","created":{"date-parts":[[2018,3,27]],"date-time":"2018-03-27T05:16:28Z","timestamp":1522127788000},"page":"429-438","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":1,"title":["Quality Assessment of High-Throughput DNA Sequencing Data via Range Analysis"],"prefix":"10.1007","author":[{"given":"Ali","family":"Fotouhi","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mina","family":"Majidi","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"M. O\u011fuzhan","family":"K\u00fclekci","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2018,3,28]]},"reference":[{"issue":"1","key":"37_CR1","doi-asserted-by":"publisher","first-page":"485","DOI":"10.1186\/1471-2105-11-485","volume":"11","author":"MP Cox","year":"2010","unstructured":"Cox, M.P., Peterson, D.A., Biggs, P.J.: SolexaQA: at-a-glance quality assessment of illumina second-generation sequencing data. BMC Bioinf. 11(1), 485 (2010)","journal-title":"BMC Bioinf."},{"issue":"1","key":"37_CR2","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/1471-2105-14-1","volume":"14","author":"X Yang","year":"2013","unstructured":"Yang, X., Liu, D., Liu, F., Wu, J., Zou, J., Xiao, X., Zhao, F., Zhu, B.: HTQC: a fast quality control toolkit for illumina sequencing data. BMC Bioinf. 14(1), 1 (2013)","journal-title":"BMC Bioinf."},{"issue":"18","key":"37_CR3","doi-asserted-by":"publisher","first-page":"2438","DOI":"10.1093\/bioinformatics\/btp429","volume":"25","author":"A Mart\u00ednez-Alc\u00e1ntara","year":"2009","unstructured":"Mart\u00ednez-Alc\u00e1ntara, A., Ballesteros, E., Feng, C., Rojas, M., Koshinsky, H., Fofanov, V., Havlak, P., Fofanov, Y.: PIQA: pipeline for illumina G1 genome analyzer data quality assessment. Bioinformatics 25(18), 2438\u20132439 (2009)","journal-title":"Bioinformatics"},{"issue":"6","key":"37_CR4","doi-asserted-by":"publisher","first-page":"238","DOI":"10.1016\/S1672-0229(11)60027-2","volume":"9","author":"T Zhang","year":"2011","unstructured":"Zhang, T., Luo, Y., Liu, K., Pan, L., Zhang, B., Yu, J., Hu, S.: BIGpre: a quality assessment package for next-generation sequencing data. Genomics Proteomics Bioinf. 9(6), 238\u2013244 (2011)","journal-title":"Genomics Proteomics Bioinf."},{"issue":"2","key":"37_CR5","doi-asserted-by":"publisher","first-page":"e30619","DOI":"10.1371\/journal.pone.0030619","volume":"7","author":"RK Patel","year":"2012","unstructured":"Patel, R.K., Jain, M.: NGS QC toolkit: a toolkit for quality control of next generation sequencing data. PLoS ONE 7(2), e30619 (2012)","journal-title":"PLoS ONE"},{"key":"37_CR6","unstructured":"Andrews, S.: FastQC: a quality control tool for high throughput sequence data (2010). http:\/\/www.bioinformatics.babraham.ac.uk\/projects\/fastqc"},{"key":"37_CR7","first-page":"11.10.1","volume":"43","author":"GA Auwera","year":"2013","unstructured":"Auwera, G.A., Carneiro, M.O., Hartl, C., Poplin, R., del Angel, G., Levy-Moonshine, A., Jordan, T., Shakir, K., Roazen, D., Thibault, J., et al.: From FastQ data to high-confidence variant calls: the genome analysis toolkit best practices pipeline. Curr. Protoc. Bioinf. 43, 11.10.1\u201311.10.33 (2013)","journal-title":"Curr. Protoc. Bioinf."},{"key":"37_CR8","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"166","DOI":"10.1007\/978-3-319-46049-9_17","volume-title":"String Processing and Information Retrieval","author":"MO K\u00fclekci","year":"2016","unstructured":"K\u00fclekci, M.O.: Inverse range selection queries. In: Inenaga, S., Sadakane, K., Sakai, T. (eds.) SPIRE 2016. LNCS, vol. 9954, pp. 166\u2013177. Springer, Cham (2016). https:\/\/doi.org\/10.1007\/978-3-319-46049-9_17"},{"issue":"5","key":"37_CR9","doi-asserted-by":"publisher","first-page":"589","DOI":"10.1093\/bioinformatics\/btp698","volume":"26","author":"H Li","year":"2010","unstructured":"Li, H., Durbin, R.: Fast and accurate long-read alignment with burrows-wheeler transform. Bioinformatics 26(5), 589\u2013595 (2010)","journal-title":"Bioinformatics"},{"issue":"3","key":"37_CR10","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/gb-2009-10-3-r25","volume":"10","author":"B Langmead","year":"2009","unstructured":"Langmead, B., Trapnell, C., Pop, M., Salzberg, S.L.: Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10(3), 1 (2009)","journal-title":"Genome Biol."},{"issue":"5","key":"37_CR11","doi-asserted-by":"publisher","first-page":"473","DOI":"10.1093\/bib\/bbq015","volume":"11","author":"H Li","year":"2010","unstructured":"Li, H., Homer, N.: A survey of sequence alignment algorithms for next-generation sequencing. Brief. Bioinf. 11(5), 473\u2013483 (2010)","journal-title":"Brief. Bioinf."},{"key":"37_CR12","unstructured":"Coriell Institute: \u201cNA12878,\u201d International HapMap Project. https:\/\/catalog.coriell.org\/0\/Sections\/Search\/Sample_Detail.aspx?Ref=GM12878"},{"key":"37_CR13","unstructured":"University of California, Berkeley: SMaSH a benchmarking toolkit for variant calling. http:\/\/smash.cs.berkeley.edu\/datasets.html"},{"key":"37_CR14","unstructured":"DNA Data Bank of Japan: \u201cDDBJ FTP repository,\u201d DDBJ Center. ftp:\/\/ftp.ddbj.nig.ac.jp\/ddbj_database\/dra\/fastq\/SRA096\/SRA096885\/SRX517292"},{"key":"37_CR15","unstructured":"NCBI: 1000genomes. ftp:\/\/ftp-trace.ncbi.nih.gov\/1000genomes\/ftp\/phase3\/integrated_sv_map\/supporting\/NA12878\/pacbio\/fastq\/"}],"container-title":["Lecture Notes in Computer Science","Bioinformatics and Biomedical Engineering"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-78723-7_37","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,3,7]],"date-time":"2024-03-07T15:18:26Z","timestamp":1709824706000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-3-319-78723-7_37"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018]]},"ISBN":["9783319787220","9783319787237"],"references-count":15,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-78723-7_37","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2018]]},"assertion":[{"value":"28 March 2018","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}},{"value":"IWBBIO","order":1,"name":"conference_acronym","label":"Conference Acronym","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"International Conference on Bioinformatics and Biomedical Engineering","order":2,"name":"conference_name","label":"Conference Name","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Granada","order":3,"name":"conference_city","label":"Conference City","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Spain","order":4,"name":"conference_country","label":"Conference Country","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2018","order":5,"name":"conference_year","label":"Conference Year","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"25 April 2018","order":7,"name":"conference_start_date","label":"Conference Start Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"27 April 2018","order":8,"name":"conference_end_date","label":"Conference End Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"6","order":9,"name":"conference_number","label":"Conference Number","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"iwbbio2018","order":10,"name":"conference_id","label":"Conference ID","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"http:\/\/iwbbio.ugr.es\/","order":11,"name":"conference_url","label":"Conference URL","group":{"name":"ConferenceInfo","label":"Conference Information"}}]}}