{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,27]],"date-time":"2025-03-27T21:28:06Z","timestamp":1743110886420,"version":"3.40.3"},"publisher-location":"Cham","reference-count":18,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783319949673"},{"type":"electronic","value":"9783319949680"}],"license":[{"start":{"date-parts":[[2018,1,1]],"date-time":"2018-01-01T00:00:00Z","timestamp":1514764800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018]]},"DOI":"10.1007\/978-3-319-94968-0_26","type":"book-chapter","created":{"date-parts":[[2018,7,12]],"date-time":"2018-07-12T14:13:51Z","timestamp":1531404831000},"page":"265-271","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":4,"title":["Predicting Gene-Disease Associations with Manifold Learning"],"prefix":"10.1007","author":[{"given":"Ping","family":"Luo","sequence":"first","affiliation":[]},{"given":"Li-Ping","family":"Tian","sequence":"additional","affiliation":[]},{"given":"Bolin","family":"Chen","sequence":"additional","affiliation":[]},{"given":"Qianghua","family":"Xiao","sequence":"additional","affiliation":[]},{"given":"Fang-Xiang","family":"Wu","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2018,7,13]]},"reference":[{"issue":"7","key":"26_CR1","doi-asserted-by":"publisher","first-page":"e39932","DOI":"10.1371\/journal.pone.0039932","volume":"7","author":"E Glaab","year":"2012","unstructured":"Glaab, E., Bacardit, J., Garibaldi, J.M., Natalio, K.: Using rule-based machine learning for candidate disease gene prioritization and sample classification of cancer gene expression data. PLoS ONE 7(7), e39932 (2012)","journal-title":"PLoS ONE"},{"issue":"9","key":"26_CR2","doi-asserted-by":"publisher","first-page":"15161523","DOI":"10.1097\/MIB.0000000000001222","volume":"23","author":"O Isakov","year":"2017","unstructured":"Isakov, O., Dotan, I., Ben-Shachar, S.: Machine learningbased gene prioritization identifies novel candidate risk genes for inflammatory bowel disease. Inflamm. Bowel Dis. 23(9), 15161523 (2017)","journal-title":"Inflamm. Bowel Dis."},{"key":"26_CR3","doi-asserted-by":"publisher","first-page":"389","DOI":"10.1186\/1471-2105-12-389","volume":"12","author":"F Mordelet","year":"2011","unstructured":"Mordelet, F., Vert, J.P.: Prodige: prioritization of disease genes with multitask machine learning from positive and unlabeled examples. BMC Bioinf. 12, 389 (2011)","journal-title":"BMC Bioinf."},{"issue":"3","key":"26_CR4","doi-asserted-by":"publisher","first-page":"165","DOI":"10.1109\/TNB.2013.2264097","volume":"12","author":"B Chen","year":"2016","unstructured":"Chen, B., Wu, F.X.: Identifying protein complexes based on multiple topological structures in PPI networks. IEEE Trans. Nanobiosci. 12(3), 165\u2013172 (2016)","journal-title":"IEEE Trans. Nanobiosci."},{"issue":"11","key":"26_CR5","doi-asserted-by":"publisher","first-page":"1054","DOI":"10.1007\/s11427-014-4745-8","volume":"57","author":"B Chen","year":"2014","unstructured":"Chen, B., Li, M., Wang, J., Wu, F.X.: Disease gene identification by using graph kernels and Markov random fields. Sci. China Life Sci. 57(11), 1054\u20131063 (2014)","journal-title":"Sci. China Life Sci."},{"issue":"2","key":"26_CR6","doi-asserted-by":"publisher","first-page":"S2","DOI":"10.1186\/1755-8794-7-S2-S2","volume":"7","author":"B Chen","year":"2014","unstructured":"Chen, B., Wang, J., Li, M., Wu, F.X.: Identifying disease genes by integrating multiple data sources. BMC Med. Genomics 7(2), S2 (2014)","journal-title":"BMC Med. Genomics"},{"issue":"3","key":"26_CR7","doi-asserted-by":"publisher","first-page":"S2","DOI":"10.1186\/1755-8794-8-S3-S2","volume":"8","author":"B Chen","year":"2015","unstructured":"Chen, B., Li, M., Wang, J., Shang, X., Wu, F.X.: A fast and high performance multiple data integration algorithm for identifying human disease genes. BMC Med. Genomicse 8(3), S2 (2015)","journal-title":"BMC Med. Genomicse"},{"issue":"4","key":"26_CR8","doi-asserted-by":"publisher","first-page":"309","DOI":"10.1109\/TNB.2016.2553119","volume":"15","author":"B Chen","year":"2016","unstructured":"Chen, B., Shang, X., Li, M., Wang, J., Wu, F.X.: Identifying individual-cancer-related genes by rebalancing the training samples. IEEE Trans. Nanobiosci. 15(4), 309\u2013315 (2016)","journal-title":"IEEE Trans. Nanobiosci."},{"key":"26_CR9","doi-asserted-by":"publisher","unstructured":"Luo, P., Tian, L.P., Ruan, J., Wu, F.X.: Disease gene prediction by integrating PPI networks, clinical RNA-Seq data and OMIM data. IEEE\/ACM Trans. Comput. Biol. Bioinf. (2017, in press). \nhttps:\/\/doi.org\/10.1109\/TCBB.2017.2770120","DOI":"10.1109\/TCBB.2017.2770120"},{"issue":"12","key":"26_CR10","doi-asserted-by":"publisher","first-page":"i60","DOI":"10.1093\/bioinformatics\/btu269","volume":"30","author":"N Natarajan","year":"2014","unstructured":"Natarajan, N., Dhillon, I.S.: Inductive matrix completion for predicting genedisease associations. Bioinformatics 30(12), i60\u2013i68 (2014)","journal-title":"Bioinformatics"},{"issue":"S5","key":"26_CR11","doi-asserted-by":"publisher","first-page":"76","DOI":"10.1186\/s12920-017-0313-y","volume":"10","author":"X Zeng","year":"2017","unstructured":"Zeng, X., Ding, N., Rodrguez-Patn, A., Zou, Q.: Probability-based collaborative filtering model for predicting genedisease associations. BMC Med. Genomics 10(S5), 76 (2017)","journal-title":"BMC Med. Genomics"},{"issue":"10","key":"26_CR12","doi-asserted-by":"publisher","first-page":"1855","DOI":"10.1109\/TNNLS.2013.2296627","volume":"25","author":"L Li","year":"2014","unstructured":"Li, L., Wu, L., Zhang, H., Wu, F.X.: A fast algorithm for nonnegative matrix factorization and its convergence. IEEE Trans. Neural Netw. Learn. Syst. 25(10), 1855\u20131863 (2014)","journal-title":"IEEE Trans. Neural Netw. Learn. Syst."},{"key":"26_CR13","doi-asserted-by":"publisher","first-page":"2031","DOI":"10.1016\/j.neucom.2017.10.039","volume":"275","author":"T Li-Ping","year":"2018","unstructured":"Li-Ping, T., Luo, P., Wang, H., Huiru, Z., Wu, F.X.: CASNMF: a converged algorithm for symmetrical nonnegative matrix factorization. Neurocomputing 275, 2031\u20132040 (2018)","journal-title":"Neurocomputing"},{"issue":"6","key":"26_CR14","doi-asserted-by":"publisher","first-page":"1373","DOI":"10.1162\/089976603321780317","volume":"15","author":"M Belkin","year":"2003","unstructured":"Belkin, M., Niyogi, P.: Laplacian eigenmaps for dimensionality reduction and data representation. Neural Comput. 15(6), 1373\u20131396 (2003)","journal-title":"Neural Comput."},{"key":"26_CR15","unstructured":"Ham, J., Lee, D.D., Saul, L.K.: Semisupervised alignment of manifolds. In: AISTATS, pp. 120\u2013127 (2005)"},{"issue":"D1","key":"26_CR16","doi-asserted-by":"publisher","first-page":"D789","DOI":"10.1093\/nar\/gku1205","volume":"43","author":"JS Amberger","year":"2014","unstructured":"Amberger, J.S., Bocchini, C.A., Schiettecatte, F., Scott, A.F., Hamosh, A.: OMIM. org: online mendelian inheritance in man (OMIM\u00ae), an online catalog of human genes and genetic disorders. Nucleic Acids Res. 43(D1), D789\u2013D798 (2014)","journal-title":"Nucleic Acids Res."},{"key":"26_CR17","doi-asserted-by":"publisher","DOI":"10.1007\/b98835","volume-title":"Principal Component Analysis","author":"IT Jolliffe","year":"2002","unstructured":"Jolliffe, I.T.: Principal Component Analysis. Springer, New York (2002). \nhttps:\/\/doi.org\/10.1007\/b98835"},{"key":"26_CR18","volume-title":"Theory and Applications of Correspondence Analysis","author":"MJ Greenacre","year":"1984","unstructured":"Greenacre, M.J.: Theory and Applications of Correspondence Analysis. Academic Press, New York (1984)"}],"container-title":["Lecture Notes in Computer Science","Bioinformatics Research and Applications"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-319-94968-0_26","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,11,15]],"date-time":"2019-11-15T01:06:01Z","timestamp":1573779961000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-319-94968-0_26"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018]]},"ISBN":["9783319949673","9783319949680"],"references-count":18,"URL":"https:\/\/doi.org\/10.1007\/978-3-319-94968-0_26","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2018]]},"assertion":[{"value":"13 July 2018","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}},{"value":"ISBRA","order":1,"name":"conference_acronym","label":"Conference Acronym","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"International Symposium on Bioinformatics Research and Applications","order":2,"name":"conference_name","label":"Conference Name","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Beijing","order":3,"name":"conference_city","label":"Conference City","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"China","order":4,"name":"conference_country","label":"Conference Country","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2018","order":5,"name":"conference_year","label":"Conference Year","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"8 June 2018","order":7,"name":"conference_start_date","label":"Conference Start Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"11 June 2018","order":8,"name":"conference_end_date","label":"Conference End Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"14","order":9,"name":"conference_number","label":"Conference Number","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"isbra2018","order":10,"name":"conference_id","label":"Conference ID","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"http:\/\/alan.cs.gsu.edu\/isbra18\/","order":11,"name":"conference_url","label":"Conference URL","group":{"name":"ConferenceInfo","label":"Conference Information"}}]}}