{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,9,25]],"date-time":"2025-09-25T16:45:49Z","timestamp":1758818749389,"version":"3.37.3"},"publisher-location":"Berlin, Heidelberg","reference-count":25,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540213000"},{"type":"electronic","value":"9783540247456"}],"license":[{"start":{"date-parts":[[2004,1,1]],"date-time":"2004-01-01T00:00:00Z","timestamp":1072915200000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2004]]},"DOI":"10.1007\/978-3-540-24745-6_6","type":"book-chapter","created":{"date-parts":[[2010,7,28]],"date-time":"2010-07-28T00:13:54Z","timestamp":1280276034000},"page":"79-94","source":"Crossref","is-referenced-by-count":37,"title":["On the Application of Formal Principles to Life Science Data: a Case Study in the Gene Ontology"],"prefix":"10.1007","author":[{"given":"Barry","family":"Smith","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jacob","family":"K\u00f6hler","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Anand","family":"Kumar","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"6_CR1","doi-asserted-by":"crossref","unstructured":"K\u00f6hler, J.: Integration of Life Science Databases. BioSilico (March 2004)","DOI":"10.1016\/S1741-8364(04)02392-3"},{"key":"6_CR2","doi-asserted-by":"crossref","first-page":"12","DOI":"10.1109\/2.116884","volume":"24","author":"W. Kim","year":"1991","unstructured":"Kim, W., Seo, J.: Classifying Schematic and Data Heterogeneity in Multidatabase Systems. IEEE COMPUTER\u00a024, 12\u201318 (1991)","journal-title":"IEEE COMPUTER"},{"key":"6_CR3","unstructured":"Madhavan, J., Bernstein, P.A., Rahm, E.: Generic Schema Matching with Cupid. In: Proc. 27th Int. Conf. on Very Large Data Bases, VLDB (2001)"},{"key":"6_CR4","doi-asserted-by":"crossref","unstructured":"K\u00f6hler, J., Philippi, S., Lange, M.: SEMEDA: Ontology Based Semantic Integration of Biological Databases. Bioinformatics\u00a019 (2003)","DOI":"10.1093\/bioinformatics\/btg340"},{"key":"6_CR5","doi-asserted-by":"crossref","unstructured":"K\u00f6hler, J., Lange, M., Hofest\u00e4dt, R., Schulze-Kremer, S.: Logical and Semantic Database Integration. In: Proc. Bioinformatics and Biomedical Engineering, pp. 77\u201380 (2000)","DOI":"10.1109\/BIBE.2000.889592"},{"key":"6_CR6","unstructured":"Baker, P.G., Brass, A., Bechhofer, S., Goble, C., Paton, N., Stevens, R.: TAMBIS: Transparent Access to Multiple Bioinformatics Information Sources. An Overview. In: Proc. sixth International Conference on Intelligent Systems for Molecular Biology (1998)"},{"key":"6_CR7","doi-asserted-by":"publisher","first-page":"184","DOI":"10.1093\/bioinformatics\/16.2.184","volume":"16","author":"R. Stevens","year":"2000","unstructured":"Stevens, R., Baker, P., Bechhofer, S., Ng, G., Jacoby, A., Paton, N.W., Goble, C.A., Brass, A.: TAMBIS: transparent access to multiple bioinformatics information sources. Bioinformatics\u00a016, 184\u2013185 (2000)","journal-title":"Bioinformatics"},{"key":"6_CR8","unstructured":"Lud\u00e4scher, B., Gupta, A., Martone, M.E.: Model-Based Mediation with Domain Maps. In: Proc. 17th Intl. Conference on Data Engineering, ICDE (2001)"},{"key":"6_CR9","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1038\/75556","volume":"25","author":"M. Ashburner","year":"2000","unstructured":"Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., Davis, A. P., Dolinski, K., Dwight, S. S., Eppig, J. T., Harris, M. A., Hill, D. P., Issel-Tarver, L., Kasarskis, A., Lewis, S., Matese, J. C., Richardson, J. E., Ringwald, M., Rubin, G. M., Sherlock, G.: Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25 (2000) 25-9.","journal-title":"Nat Genet"},{"key":"6_CR10","unstructured":"Smith, B.: The Logic of Biological Classification and the Foundations of Biomedical Ontology (Invited paper). In: Proc. 10th International Conference in Logic Methodology and Philosophy of Science, Oviedo, Spain (2003)"},{"key":"6_CR11","doi-asserted-by":"crossref","unstructured":"Lord, P.W., Stevens, R.D., Brass, A., Goble, C.A.: Semantic similarity measures as tools for exploring the gene ontology. In: Pac. Symp. Biocomput. pp. 601\u2013612 (2003)","DOI":"10.1142\/9789812776303_0056"},{"key":"6_CR12","unstructured":"Knight, K., Luk, S.: Building a Large-Scale Knowledge Base for Machine Translation. In: Proc. National Conference on Artificial Intelligence - AAAI (1994)"},{"key":"6_CR13","doi-asserted-by":"publisher","first-page":"1564","DOI":"10.1093\/bioinformatics\/btg194","volume":"19","author":"P. Lambrix","year":"2003","unstructured":"Lambrix, P., Habbouche, M., Perez, M.: Evaluation of ontology development tools for bioinformatics. Bioinformatics\u00a019, 1564\u20131571 (2003)","journal-title":"Bioinformatics"},{"issue":"Suppl.1","key":"6_CR14","first-page":"1180","volume":"19","author":"J.D. Kim","year":"2003","unstructured":"Kim, J.D., Ohta, T., Tateisi, Y., Tsujii, J.: GENIA corpus-a semantically annotated corpus for bio-textmining. Bioinformatics\u00a019(Suppl.1), 1180\u20131182 (2003)","journal-title":"Bioinformatics"},{"key":"6_CR15","doi-asserted-by":"publisher","first-page":"33","DOI":"10.1016\/S1386-5056(02)00055-2","volume":"67","author":"G. Nenadic","year":"2002","unstructured":"Nenadic, G., Mima, H., Spasic, I., Ananiadou, S., Tsujii, J.: Terminology-driven literature mining and knowledge acquisition in biomedicine. Int. J. Med. Inf.\u00a067, 33\u201348 (2002)","journal-title":"Int. J. Med. Inf."},{"key":"6_CR16","doi-asserted-by":"publisher","first-page":"1417","DOI":"10.1093\/bioinformatics\/btg160","volume":"19","author":"J.H. Chiang","year":"2003","unstructured":"Chiang, J.H., Yu, H.C.: MeKE: discovering the functions of gene products from biomedical literature via sentence alignment. Bioinformatics\u00a019, 1417\u20131422 (2003)","journal-title":"Bioinformatics"},{"key":"6_CR17","doi-asserted-by":"publisher","first-page":"241","DOI":"10.1093\/bioinformatics\/19.2.241","volume":"19","author":"I. Yeh","year":"2003","unstructured":"Yeh, I., Karp, P.D., Noy, N.F., Altman, R.B.: Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO). Bioinformatics\u00a019, 241\u2013248 (2003)","journal-title":"Bioinformatics"},{"key":"6_CR18","unstructured":"Smith, B., Rosse, C.: The Role of Foundational Relations in Biomedical Ontology Alignment (under review)"},{"key":"6_CR19","doi-asserted-by":"crossref","first-page":"111","DOI":"10.1007\/978-94-017-0073-3_7","volume-title":"The Semantics of Relationships: An Interdisciplinary Perspective","author":"N. Guarino","year":"2002","unstructured":"Guarino, N., Welty, C.: Identity and subsumption. In: Green, R., Bean, C.A., Hyon Myaeng, S. (eds.) The Semantics of Relationships: An Interdisciplinary Perspective, pp. 111\u2013126. Kluwer Academic Publishers, Dordrecht (2002)"},{"key":"6_CR20","doi-asserted-by":"publisher","first-page":"147","DOI":"10.1007\/s004410100413","volume":"305","author":"G.S. Hafner","year":"2001","unstructured":"Hafner, G.S., Tokarski, T.R.: Retinal development in the lobster Homarus americanus. Comparison with compound eyes of insects and other crustaceans. Cell Tissue Res\u00a0305, 147\u2013158 (2001)","journal-title":"Cell Tissue Res"},{"key":"6_CR21","doi-asserted-by":"publisher","first-page":"28","DOI":"10.1093\/nar\/gkg033","volume":"31","author":"D.L. Wheeler","year":"2003","unstructured":"Wheeler, D.L., Church, D.M., Federhen, S., Lash, A.E., Madden, T.L., Pontius, J.U., Schuler, G.D., Schriml, L.M., Sequeira, E., Tatusova, T.A., Wagner, L.: Database resources of the National Center for Biotechnology. Nucleic Acids Res.\u00a031, 28\u201333 (2003)","journal-title":"Nucleic Acids Res."},{"key":"6_CR22","unstructured":"Smith, B., Williams, J., Schulze-Kremer, S.: The Ontology of the Gene Ontology. In: Proc. Annual Symposium of the American Medical Informatics Association, pp. 609\u2013613 (2003)"},{"key":"6_CR23","doi-asserted-by":"crossref","unstructured":"Rosse, C., Mejino Jr., J.L.V.: A Reference Ontology for Bioinformatics: The Foundational Model of Anatomy. Journal of Biomedical Informatics in press (2003)","DOI":"10.1016\/j.jbi.2003.11.007"},{"key":"6_CR24","unstructured":"Michael, J., Mejino Jr., J.L., Rosse, C.: The role of definitions in biomedical concept representation. In: Proc AMIA Symp. pp. 463\u2013467 (2001)"},{"key":"6_CR25","unstructured":"Ogren, P.V., Cohen, K.B., Acquaah-Mensah, G.K., Eberlein, J., Hunter, L.T.: The Compositional Structure of Gene Ontology Terms. In: Proc. Proceedings of the Pacific Symposium on Biocomputing - PSB (2004)"}],"container-title":["Lecture Notes in Computer Science","Data Integration in the Life Sciences"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-540-24745-6_6","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,2,23]],"date-time":"2025-02-23T12:28:52Z","timestamp":1740313732000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-540-24745-6_6"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2004]]},"ISBN":["9783540213000","9783540247456"],"references-count":25,"URL":"https:\/\/doi.org\/10.1007\/978-3-540-24745-6_6","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2004]]}}}