{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,11,11]],"date-time":"2026-11-11T05:40:09Z","timestamp":1794375609576,"version":"4.9.0"},"publisher-location":"Berlin, Heidelberg","reference-count":30,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"value":"9783540239871","type":"print"},{"value":"9783540305378","type":"electronic"}],"license":[{"start":{"date-parts":[[2004,1,1]],"date-time":"2004-01-01T00:00:00Z","timestamp":1072915200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2004,1,1]],"date-time":"2004-01-01T00:00:00Z","timestamp":1072915200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2004]]},"DOI":"10.1007\/978-3-540-30537-8_12","type":"book-chapter","created":{"date-parts":[[2010,3,12]],"date-time":"2010-03-12T08:41:24Z","timestamp":1268383284000},"page":"109-118","source":"Crossref","is-referenced-by-count":3,"title":["Ranking Gene Regulatory Network Models with Microarray Data and Bayesian Network"],"prefix":"10.1007","author":[{"given":"Hongqiang","family":"Li","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mi","family":"Zhou","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yan","family":"Cui","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","reference":[{"key":"12_CR1","doi-asserted-by":"publisher","first-page":"799","DOI":"10.1126\/science.1075090","volume":"298","author":"T.I. Lee","year":"2002","unstructured":"Lee, T.I., Rinaldi, N.J., Robert, F., Odom, D.T., Bar-Joseph, Z., Gerber, G.K., Hannett, N.M., Harbison, C.T., Thompson, C.M., Simon, I., Zeitlinger, J., Jennings, E.G., Murray, H.L., Gordon, D.B., Ren, B., Wyrick, J.J., Tagne, J.B., Volkert, T.L., Fraenkel, E., Gifford, D.K., Young, R.A.: Transcriptional Regulatory Networks in Saccharomyces cerevisiae. Science\u00a0298, 799\u2013804 (2002)","journal-title":"Science"},{"key":"12_CR2","doi-asserted-by":"publisher","first-page":"60","DOI":"10.1038\/ng873","volume":"31","author":"N. Guelzim","year":"2002","unstructured":"Guelzim, N., Bottani, S., Bourgine, P., Kepes, F.: Topological and causal structure of the yeast transcriptional regulatory network. Nat. Genet.\u00a031, 60\u201363 (2002)","journal-title":"Nat. Genet."},{"issue":"1-2","key":"12_CR3","doi-asserted-by":"publisher","first-page":"31","DOI":"10.1016\/S0303-2647(02)00019-9","volume":"66","author":"D. Repsilber","year":"2002","unstructured":"Repsilber, D., Liljenstr\u00f6mb, H., Anderson, S.G.E.: Reverse engineering of regulatory networks: simulation studies on a genetic algorithm approach for ranking hypotheses. Biosystems\u00a066(1-2), 31\u201341 (2002)","journal-title":"Biosystems"},{"key":"12_CR4","volume-title":"Probabilistic Reasoning in Intelligent Systems","author":"J. Pearl","year":"1988","unstructured":"Pearl, J.: Probabilistic Reasoning in Intelligent Systems. Morgan Kaufmann Publishers, San Francisco (1988)"},{"key":"12_CR5","doi-asserted-by":"publisher","first-page":"601","DOI":"10.1089\/106652700750050961","volume":"7","author":"N. Freidman","year":"2000","unstructured":"Freidman, N., Linial, M., Nachman, I., Peer, D.: Using Bayesian Networks to Analyze Expression Data. J. Comput. Biol.\u00a07, 601\u2013620 (2000)","journal-title":"J. Comput. Biol."},{"key":"12_CR6","unstructured":"Spirtes, P., Glymour, C., Scheines., R., Kauffman, S., Aimale, V., Wimberly, F.: Constructing Bayesian Network Models of Gene Expression Networks from Microarray Data. In: Proceedings of the Atlantic Symposium on Computational Biology, Genome Information Systems and Technology (2001)"},{"key":"12_CR7","doi-asserted-by":"publisher","first-page":"S215","DOI":"10.1093\/bioinformatics\/17.suppl_1.S215","volume":"17","author":"D. Peer","year":"2001","unstructured":"Peer, D., Regev, A., Elidan, G., Friedman, N.: Inferring subnetworks from perturbed expression profiles. Bioinformatics\u00a017, S215\u2013S224 (2001)","journal-title":"Bioinformatics"},{"key":"12_CR8","doi-asserted-by":"publisher","first-page":"1147","DOI":"10.1093\/bioinformatics\/btg011","volume":"19","author":"T. Chu","year":"2003","unstructured":"Chu, T., Glymour, C., Scheines, R., Spirtes, P.: A Statistical Problem for Inference to Regulatory Structure from Associations of Gene Expression Measurement with Microarrays. Bioinformatics\u00a019, 1147\u20131152 (2003)","journal-title":"Bioinformatics"},{"key":"12_CR9","unstructured":"Gene Expression Omnibus, http:\/\/www.ncbi.nlm.nih.gov\/geo\/"},{"key":"12_CR10","unstructured":"Stanford Microarray Database , http:\/\/genome-www5.stanford.edu\/MicroArray\/SMD\/"},{"issue":"1","key":"12_CR11","doi-asserted-by":"publisher","first-page":"94","DOI":"10.1093\/nar\/gkg078","volume":"31","author":"J. Gollub","year":"2003","unstructured":"Gollub, J., Ball, C.A., Binkley, G., Demeter, J., Finkelstein, D.B., Hebert, J.M., Hernandez-Boussard, T., Jin, H., Kaloper, M., Matese, J.C., Schroeder, M., Brown, P.O., Botstein, D., Sherlock, G.: The Stanford Microarray Database: data access and quality assessment tools. Nucleic Acids Res\u00a031(1), 94\u201396 (2003)","journal-title":"Nucleic Acids Res"},{"key":"12_CR12","unstructured":"ArrayExpress at EBI, http:\/\/www.ebi.ac.uk\/arrayexpress\/"},{"key":"12_CR13","unstructured":"ExpressDB, http:\/\/arep.med.harvard.edu\/ExpressDB\/"},{"issue":"4","key":"12_CR14","doi-asserted-by":"publisher","first-page":"431","DOI":"10.1101\/gr.10.4.431","volume":"10","author":"J. Aach","year":"2000","unstructured":"Aach, J., Rindone, W., Church, G.M.: Systematic management and analysis of yeast gene expression data. Genome Res.\u00a010(4), 431\u2013445 (2000)","journal-title":"Genome Res."},{"key":"12_CR15","unstructured":"Hartemink, A.J.: Principled Computational Methods for the Validation and Discovery of Genetic Regulatory Networks. PhD thesis, MIT (2001)"},{"key":"12_CR16","unstructured":"Saccharomyces Genome Database, http:\/\/www.yeastgenome.org\/"},{"key":"12_CR17","unstructured":"BIOBASE, GmbH Databases Transfac Professional Suite, http:\/\/www.cognia.com\/"},{"key":"12_CR18","doi-asserted-by":"crossref","unstructured":"Heckerman, D.: A tutorial on learning with Bayesian networks. In: Jordan, M.I. (ed.) Learning in Graphical Models, pp. 301\u2013354 (1998)","DOI":"10.1007\/978-94-011-5014-9_11"},{"key":"12_CR19","doi-asserted-by":"publisher","first-page":"67","DOI":"10.1089\/10665270252833208","volume":"9","author":"H. de Jong","year":"2002","unstructured":"de Jong, H.: Modeling and Simulating of Genetic Regulatory Systems: A Literature Review. J. Comput. Biol.\u00a09, 67\u2013103 (2002)","journal-title":"J. Comput. Biol."},{"key":"12_CR20","volume-title":"Causality: Models, Reasoning, and Inference","author":"J. Pearl","year":"2000","unstructured":"Pearl, J.: Causality: Models, Reasoning, and Inference. Cambridge University Press, Cambridge (2000)"},{"issue":"2","key":"12_CR21","doi-asserted-by":"publisher","first-page":"166","DOI":"10.1038\/ng1165","volume":"34","author":"E. Segal","year":"2003","unstructured":"Segal, E., Shapira, M., Regev, A., Pe\u2019er, D., Botstein, D., Koller, D., Friedman, N.: Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data. Nat. Genet.\u00a034(2), 166\u2013176 (2003)","journal-title":"Nat. Genet."},{"issue":"10","key":"12_CR22","doi-asserted-by":"publisher","first-page":"1227","DOI":"10.1093\/bioinformatics\/btg147","volume":"19","author":"J. Bockhorst","year":"2003","unstructured":"Bockhorst, J., Craven, M., Page, D., Shavlik, J., Glasner, J.: A Bayesian network approach to operon prediction. Bioinformatics\u00a019(10), 1227\u20131235 (2003)","journal-title":"Bioinformatics"},{"issue":"13","key":"12_CR23","doi-asserted-by":"publisher","first-page":"2886","DOI":"10.1093\/nar\/gkf388","volume":"30","author":"C. Sabatti","year":"2002","unstructured":"Sabatti, C., Rohlin, L., Oh, M.K., Liao, J.C.: Co-expression pattern from DNA microarray experiments as a tool for operon prediction. Nucleic Acids Res.\u00a030(13), 2886\u20132893 (2002)","journal-title":"Nucleic Acids Res."},{"issue":"1","key":"12_CR24","doi-asserted-by":"publisher","first-page":"19","DOI":"10.1093\/dnares\/10.1.19","volume":"10","author":"C.J. Savoie","year":"2003","unstructured":"Savoie, C.J., Aburatani, S., Watanabe, S., Eguchi, Y., Muta, S., Imoto, S., Miyano, S., Kuhara, S., Tashiro, K.: Use of gene networks from full genome microarray libraries to identify functionally relevant drug-affected genes and gene regulation cascades. DNA Res.\u00a010(1), 19\u201325 (2003)","journal-title":"DNA Res."},{"key":"12_CR25","doi-asserted-by":"crossref","unstructured":"Smith, V.A., Jarvis, E.D., Hartemink, A.J.: Influence of network topology and data collection on network inference. In: Pac. Symp. Biocomput., pp. 164\u2013175 (2003)","DOI":"10.1142\/9789812776303_0016"},{"issue":"suppl. 1","key":"12_CR26","doi-asserted-by":"publisher","first-page":"241","DOI":"10.1093\/bioinformatics\/18.suppl_1.S241","volume":"18","author":"I.M. Ong","year":"2002","unstructured":"Ong, I.M., Glasner, J.D., Page, D.: Modelling regulatory pathways in E. coli from time series expression profiles. Bioinformatics\u00a018(suppl. 1), S241\u2013S248 (2002)","journal-title":"Bioinformatics"},{"key":"12_CR27","unstructured":"Imoto, S., Goto, T., Miyano, S.: Estimation of genetic networks and functional structures between genes by using Bayesian networks and nonparametric regression. In: Pac. Symp. Biocomput., pp. 175\u2013186 (2002)"},{"issue":"2","key":"12_CR28","doi-asserted-by":"publisher","first-page":"261","DOI":"10.1093\/bioinformatics\/18.2.261","volume":"18","author":"I. Shmulevich","year":"2002","unstructured":"Shmulevich, I., Dougherty, E.R., Kim, S., Zhang, W.: Probabilistic Boolean Networks: a rule-based uncertainty model for gene regulatory networks. Bioinformatics\u00a018(2), 261\u2013274 (2002)","journal-title":"Bioinformatics"},{"issue":"3","key":"12_CR29","doi-asserted-by":"publisher","first-page":"197","DOI":"10.1007\/BF00994016","volume":"20","author":"D. Heckerman","year":"1995","unstructured":"Heckerman, D., Geiger, D., Chickering, D.M.: Learning Bayesian networks: The combination of knowledge and statistical data. Machine Learning\u00a020(3), 197\u2013243 (1995)","journal-title":"Machine Learning"},{"key":"12_CR30","unstructured":"Graphviz , http:\/\/www.research.att.com\/sw\/tools\/graphviz"}],"container-title":["Lecture Notes in Computer Science","Data Mining and Knowledge Management"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-540-30537-8_12","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,2,19]],"date-time":"2025-02-19T07:12:55Z","timestamp":1739949175000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-3-540-30537-8_12"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2004]]},"ISBN":["9783540239871","9783540305378"],"references-count":30,"URL":"https:\/\/doi.org\/10.1007\/978-3-540-30537-8_12","relation":{"is-part-of":[{"id-type":"doi","id":"https:\/\/doi.org\/10.1007\/b104156","asserted-by":"object"}]},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"value":"0302-9743","type":"print"},{"value":"1611-3349","type":"electronic"}],"subject":[],"published":{"date-parts":[[2004]]}}}