{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,8]],"date-time":"2025-10-08T16:16:54Z","timestamp":1759940214689},"publisher-location":"Berlin, Heidelberg","reference-count":24,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540252085"},{"type":"electronic","value":"9783540322511"}],"license":[{"start":{"date-parts":[[2005,1,1]],"date-time":"2005-01-01T00:00:00Z","timestamp":1104537600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2005]]},"DOI":"10.1007\/978-3-540-32251-1_3","type":"book-chapter","created":{"date-parts":[[2010,3,1]],"date-time":"2010-03-01T16:35:34Z","timestamp":1267461334000},"page":"20-31","source":"Crossref","is-referenced-by-count":3,"title":["Distributed Cell Biology Simulations with E-Cell System"],"prefix":"10.1007","author":[{"given":"Masahiro","family":"Sugimoto","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Kouichi","family":"Takahashi","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tomoya","family":"Kitayama","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Daiki","family":"Ito","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Masaru","family":"Tomita","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"3_CR1","doi-asserted-by":"publisher","first-page":"1585","DOI":"10.1093\/bioinformatics\/btg192","volume":"19","author":"K.B. Li","year":"2003","unstructured":"Li, K.B.: ClustalW-MPI: ClustalW Analysis using Distributed and Parallel Computing. Bioinformatics\u00a019, 1585\u20131586 (2003)","journal-title":"Bioinformatics"},{"key":"3_CR2","doi-asserted-by":"publisher","first-page":"441","DOI":"10.1093\/bioinformatics\/btg007","volume":"19","author":"K. Hokamp","year":"2003","unstructured":"Hokamp, K., Shields, D.C., Wolfe, K.H., Caffrey, D.R.: Wrapping up BLAST and Other Applications for Use on Unix Clusters. Bioinformatics\u00a019, 441\u2013442 (2003)","journal-title":"Bioinformatics"},{"key":"3_CR3","doi-asserted-by":"publisher","first-page":"502","DOI":"10.1093\/bioinformatics\/18.3.502","volume":"18","author":"H.A. Schmidt","year":"2002","unstructured":"Schmidt, H.A., Strimmer, K., Vingron, M., Haeseler, A.: TREE-PUZZLE: Maximum Likelihood Phylogenetic Analysis using Quartets and Parallel Computing. Bioinformatics\u00a018, 502\u2013504 (2002)","journal-title":"Bioinformatics"},{"key":"3_CR4","doi-asserted-by":"publisher","first-page":"72","DOI":"10.1093\/bioinformatics\/15.1.72","volume":"15","author":"M. Tomita","year":"1999","unstructured":"Tomita, M., Hashimoto, K., Takahashi, K., Shimizu, T., Matsuzaki, Y., Miyoshi, F., Saito, K., Tanida, S., Yugi, K., Venter, J.C., Hutchison, C.: E-Cell: Software Environment for Whole Cell Simulation. Bioinformatics\u00a015, 72\u201384 (1999)","journal-title":"Bioinformatics"},{"key":"3_CR5","doi-asserted-by":"publisher","first-page":"64","DOI":"10.1109\/MIS.2002.1039834","volume":"17","author":"K. Takahashi","year":"2002","unstructured":"Takahashi, K., Yugi, K., Hashimoto, K., Yamada, Y., Pickett, C.F., Tomita, M.: Computational Challenges in Cell Simulation. IEEE Intelligent Systems\u00a017, 64\u201371 (2002)","journal-title":"IEEE Intelligent Systems"},{"key":"3_CR6","doi-asserted-by":"publisher","first-page":"1727","DOI":"10.1093\/bioinformatics\/btg221","volume":"19","author":"K. Takahashi","year":"2003","unstructured":"Takahashi, K., Ishikawa, N., Sadamoto, Y., Sasamoto, H., Ohta, S., Shiozawa, A., Miyoshi, F., Naito, Y., Nakayama, Y., Tomita, M.: E-Cell 2: Multi-platform E-Cell Simulation System. Bioinformatics\u00a019, 1727\u20131729 (2003)","journal-title":"Bioinformatics"},{"key":"3_CR7","first-page":"294","volume":"14","author":"K. Takahashi","year":"2003","unstructured":"Takahashi, K., Sakurada, T., Kaizu, K., Kitayama, T., Arjunan, S., Ishida, T., Bereczki, G., Ito, D., Sugimoto, M., Komori, T., Seiji, O., Tomita, M.: E-CELL System Version 3: A Software Platform for Integrative Computational Biology. Genome Informatics\u00a014, 294\u2013295 (2003)","journal-title":"Genome Informatics"},{"key":"3_CR8","unstructured":"Arjunan, S., Takahashi, K., Tomita, M.: Shared-Memory Multiprocessing of Gillespie\u2019s Stochastic Simulation Algorithm on E-Cell3. In: 4th International Conference on Systems Biology in St.Louis, MO (2003); poster 253"},{"key":"3_CR9","doi-asserted-by":"publisher","first-page":"115","DOI":"10.1177\/109434209701100205","volume":"11","author":"I. Foster","year":"1997","unstructured":"Foster, I., Kesselman, C.: Globus: A Metacomputing Infrastructure Toolkit. Int. J. Supercomput. Appl.\u00a011, 115\u2013128 (1997)","journal-title":"Int. J. Supercomput. Appl."},{"key":"3_CR10","doi-asserted-by":"publisher","first-page":"225","DOI":"10.1093\/bioinformatics\/btg1031","volume":"19","author":"A. Rowe","year":"2003","unstructured":"Rowe, A., Kalaitzopoulos, D., Osmond, M., Ghanem, M., Guo, Y.: The Discovery Net System for High Throughput Bioinformatics. Bioinformatics\u00a019, 225\u2013231 (2003)","journal-title":"Bioinformatics"},{"key":"3_CR11","doi-asserted-by":"publisher","first-page":"212","DOI":"10.1093\/bioinformatics\/btg1028","volume":"19","author":"T.M. Oinn","year":"2003","unstructured":"Oinn, T.M.: Talisman - Rapid Application Development for The Grid. Bioinformatics\u00a019, 212\u2013214 (2003)","journal-title":"Bioinformatics"},{"key":"3_CR12","doi-asserted-by":"publisher","first-page":"302","DOI":"10.1093\/bioinformatics\/btg1041","volume":"19","author":"R.D. Steavens","year":"2003","unstructured":"Steavens, R.D., Robinson, A.J., Goble, C.A.: \n                    my\n                  Grid: Personalized Bioinformatics of The Information Grid. Bioinformatics\u00a019, 302\u2013304 (2003)","journal-title":"Bioinformatics"},{"key":"3_CR13","first-page":"535","volume":"14","author":"F. Konishi","year":"2003","unstructured":"Konishi, F., Shiroto, Y., Umetcu, R., Konagaya, A.: Scalable BLAST Service in OBIGrid Environment. Genome Informatics\u00a014, 535\u2013536 (2003)","journal-title":"Genome Informatics"},{"key":"3_CR14","doi-asserted-by":"publisher","first-page":"1646","DOI":"10.1093\/bioinformatics\/bth122","volume":"20","author":"S. Kimura","year":"2004","unstructured":"Kimura, S., Kawasaki, T., Hatakeyama, M., Naka, T., Konishi, F., Konagaya, A.: OBIYagns: A Grid-based Biochemical Simulator with A Parameter Estimator. Bioinformatics\u00a020, 1646\u20131648 (2004)","journal-title":"Bioinformatics"},{"key":"3_CR15","doi-asserted-by":"crossref","unstructured":"Buyya, R., Abramson, D., Giddy, J.: Nimrod\/G: An architecture for a Resource Management and Scheduling System in A Global Computational Grid. In: Proceedings of the HPC ASIA 2000, China (2000)","DOI":"10.1109\/HPC.2000.846563"},{"key":"3_CR16","first-page":"288","volume":"14","author":"S. Andrew","year":"2003","unstructured":"Andrew, S., Ishikawa, N., Yamazaki, T., Fujita, A., Kaneko, I., Fukui, Y., Ebisuzaki, T.: Ecell2d: Distributed E-Cell2. Genome Informatics\u00a014, 288\u2013289 (2003)","journal-title":"Genome Informatics"},{"key":"3_CR17","doi-asserted-by":"publisher","first-page":"643","DOI":"10.1093\/bioinformatics\/btg027","volume":"19","author":"S. Kikuchi","year":"2003","unstructured":"Kikuchi, S., Tominaga, D., Arita, M., Takahashi, K., Tomita, M.: Dynamic Modeling of Genetic Networks using Genetic Algorithm and S-system. Bioinformatics\u00a019, 643\u2013650 (2003)","journal-title":"Bioinformatics"},{"key":"3_CR18","unstructured":"Hu, B., Tomita, M.: A Stochastic E. coli Heat Shock Model Using E-Cell v3. In: 4th International Conference on Systems Biology, in St. Louis, MO (2003)"},{"key":"3_CR19","first-page":"141","volume":"10","author":"E. Cantu-Paz","year":"1997","unstructured":"Cantu-Paz, E.: A Survey of Parallel Genetic Algorithms. Calculateurs Paralleles, Reseaux et Systems Repartis\u00a010, 141\u2013171 (1997)","journal-title":"Calculateurs Paralleles, Reseaux et Systems Repartis"},{"key":"3_CR20","first-page":"113","volume-title":"Parallel and Distributed Evolutionary Algorithms: A Review","author":"M. Tomassini","year":"1999","unstructured":"Tomassini, M.: Parallel and Distributed Evolutionary Algorithms: A Review, pp. 113\u2013133. John Wiley and Sons, Chichester (1999)"},{"key":"3_CR21","doi-asserted-by":"crossref","unstructured":"Horii, H., Kunifuji, S., Matsuzawa, T.: Asynchronous Island Parallel GA Using Multiform Subpopulations. LNCS, pp. 122\u2013129 (1999)","DOI":"10.1007\/3-540-48873-1_17"},{"key":"3_CR22","volume-title":"Computational Analysis of Biochemical Systems","author":"E.O. Voit","year":"2000","unstructured":"Voit, E.O.: Computational Analysis of Biochemical Systems. Cambridge University Press, Cambridge (2000)"},{"key":"3_CR23","unstructured":"Athel, C.B.: Fundamentals of Enzyme Kinetics. Portland Press (1995)"},{"key":"3_CR24","volume-title":"Genetic Programming: On the Programming of Computers by Means of Natural Selection","author":"J.R. Koza","year":"1992","unstructured":"Koza, J.R.: Genetic Programming: On the Programming of Computers by Means of Natural Selection. The MIT Press, Cambridge (1992)"}],"container-title":["Lecture Notes in Computer Science","Grid Computing in Life Science"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-540-32251-1_3","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,19]],"date-time":"2019-05-19T17:27:07Z","timestamp":1558286827000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-540-32251-1_3"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2005]]},"ISBN":["9783540252085","9783540322511"],"references-count":24,"URL":"https:\/\/doi.org\/10.1007\/978-3-540-32251-1_3","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2005]]}}}