{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,5]],"date-time":"2024-09-05T06:02:37Z","timestamp":1725516157511},"publisher-location":"Berlin, Heidelberg","reference-count":20,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540693864"},{"type":"electronic","value":"9783540693871"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2008]]},"DOI":"10.1007\/978-3-540-69387-1_42","type":"book-chapter","created":{"date-parts":[[2008,7,31]],"date-time":"2008-07-31T06:38:34Z","timestamp":1217486314000},"page":"379-386","source":"Crossref","is-referenced-by-count":6,"title":["Noncanonical Base Pairing in RNA: Topological and NBO Analysis of Hoogsteen Edge - Sugar Edge Interactions"],"prefix":"10.1007","author":[{"given":"Purshotam","family":"Sharma","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Harjinder","family":"Singh","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Abhijit","family":"Mitra","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"42_CR1","doi-asserted-by":"crossref","first-page":"5291","DOI":"10.1039\/b704781a","volume":"9","author":"J. \u010cerny","year":"2007","unstructured":"\u010cerny, J., Hobza, P.: Non-covalent interactions in biomacromolecules. Phys. Chem. Chem. Phys.\u00a09, 5291\u20135303 (2007)","journal-title":"Phys. Chem. Chem. Phys."},{"key":"42_CR2","doi-asserted-by":"crossref","first-page":"2231","DOI":"10.1135\/cccc20032231","volume":"68","author":"J. \u0160poner","year":"2003","unstructured":"\u0160poner, J., Hobza, P.: Molecular interactions of nucleic acid bases. A review of quantum-chemical studies. Collect; Czech Chem. Commun.\u00a068, 2231\u20132282 (2003)","journal-title":"A review of quantum-chemical studies. Collect; Czech Chem. Commun."},{"key":"42_CR3","doi-asserted-by":"publisher","first-page":"499","DOI":"10.1017\/S1355838201002515","volume":"7","author":"N.B. Leontis","year":"2001","unstructured":"Leontis, N.B., Westhof, E.: Geometric nomenclature and classification of RNA base pairs. RNA\u00a07, 499\u2013512 (2001)","journal-title":"RNA"},{"key":"42_CR4","doi-asserted-by":"publisher","first-page":"3497","DOI":"10.1093\/nar\/gkf481","volume":"30","author":"N.B. Leontis","year":"2002","unstructured":"Leontis, N.B., Stombaugh, J., Westhof, E.: The non-Watson-Crick base pairs and their associated isostericity matrices. Nucleic Acids Res.\u00a030, 3497\u20133531 (2002)","journal-title":"Nucleic Acids Res."},{"key":"42_CR5","doi-asserted-by":"crossref","first-page":"2292","DOI":"10.1021\/jp050132k","volume":"A 109","author":"J.E. \u0160poner","year":"2005","unstructured":"\u0160poner, J.E., Spackov, N., Pulhanek, P., Lesczynski, J., \u0160poner, J.: Non-Watson-Crick Base Pairing in RNA. Quantum chemical analysis of the cis Watson-Crick\/Sugar Edge base pair family. J. Phys. Chem.\u00a0A 109, 2292\u20132301 (2005)","journal-title":"J. Phys. Chem."},{"key":"42_CR6","doi-asserted-by":"crossref","unstructured":"Das, R., Baker, D.: Automated de novo prediction of native-like RNA tertiary structures. Proc. Natl. Acad. Sci.\u00a0104, 14664\u201314669","DOI":"10.1073\/pnas.0703836104"},{"key":"42_CR7","doi-asserted-by":"publisher","first-page":"809","DOI":"10.1007\/s12038-007-0082-4","volume":"32","author":"D. Bhattacharyya","year":"2007","unstructured":"Bhattacharyya, D., Koripella, S.C., Mitra, A., Rajendran, V.B., Sinha, B.: Theoretical analysis of noncanonical base pairing interactions in RNA molecules. J. Biosci.\u00a032, 809\u2013825 (2007)","journal-title":"J. Biosci."},{"key":"42_CR8","doi-asserted-by":"publisher","first-page":"525","DOI":"10.1007\/s12039-007-0066-9","volume":"119","author":"P. Sharma","year":"2007","unstructured":"Sharma, P., Mitra, A., Sharma, S., Singh, H.: Basepairing in RNA: A computational study of structural aspects and interaction energies. J. Chem. Sci.\u00a0119, 525\u2013531 (2007)","journal-title":"J. Chem. Sci."},{"key":"42_CR9","doi-asserted-by":"crossref","unstructured":"Sharma, P., Mitra, A., Sharma, S., Singh, H., Bhattacharyya, D.: Quantum chemical studies of noncanonical RNA base pairs: The trans Watson-Crick: Watson-Crick family. J. Biomol. Struct. Dyn. (in press)","DOI":"10.1080\/07391102.2008.10507216"},{"key":"42_CR10","unstructured":"Frisch, M.J., et al.: Gaussian03, revision B.05; Gaussian, Inc.: Pittsburgh, PA (2003)"},{"key":"42_CR11","doi-asserted-by":"crossref","first-page":"149","DOI":"10.1080\/07391102.2006.10507108","volume":"24","author":"J. Das","year":"2006","unstructured":"Das, J., Mukherjee, S., Mitra, A., Bhattacharyya, D.: Noncanonical base pairs and higher order structures in nucleic acids: Crystal structure database analysis. J. Biomol. Struct. Dyn.\u00a024, 149\u2013162 (2006)","journal-title":"J. Biomol. Struct. Dyn."},{"key":"42_CR12","doi-asserted-by":"crossref","first-page":"11399","DOI":"10.1021\/jp051126r","volume":"B 109","author":"J.E. \u0160poner","year":"2005","unstructured":"\u0160poner, J.E., Spackova, L.J., \u0160poner, J.: Principles of RNA Base Pairing: Structures and Energies of the Trans Watson-Crick\/Sugar Edge Base Pairs. J. Phys. Chem.\u00a0B 109, 11399\u201311410 (2005)","journal-title":"J. Phys. Chem."},{"key":"42_CR13","doi-asserted-by":"publisher","first-page":"5648","DOI":"10.1063\/1.464913","volume":"98","author":"A.D. Becke","year":"1993","unstructured":"Becke, A.D.: Density-functional thermochemistry. III. The role of exact exchange. J. Chem. Phys.\u00a098, 5648\u20135652 (1993)","journal-title":"J. Chem. Phys."},{"key":"42_CR14","doi-asserted-by":"crossref","first-page":"785","DOI":"10.1103\/PhysRevB.37.785","volume":"B 37","author":"C. Lee","year":"1988","unstructured":"Lee, C., Yang, P.R.G.: Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density. Phys. Rev.\u00a0B 37, 785\u2013789 (1988)","journal-title":"Phys. Rev."},{"key":"42_CR15","doi-asserted-by":"publisher","first-page":"10142","DOI":"10.1021\/ja048436s","volume":"126","author":"J. \u0160poner","year":"2004","unstructured":"\u0160poner, J., Jurecka, P., Hobza, P.: Accurate Interaction Energies of Hydrogen-Bonded Nucleic Acid Base Pairs. J. Am. Chem. Soc.\u00a0126, 10142\u201310151 (2004)","journal-title":"J. Am. Chem. Soc."},{"key":"42_CR16","doi-asserted-by":"publisher","first-page":"735","DOI":"10.1063\/1.449486","volume":"83","author":"A.E. Reed","year":"1985","unstructured":"Reed, A.E., Weinstock, R.B., Weinhold, F.J.: Natural population analysis. J. Chem. Phys.\u00a083, 735\u2013746 (1985)","journal-title":"J. Chem. Phys."},{"key":"42_CR17","doi-asserted-by":"crossref","DOI":"10.1093\/oso\/9780198551683.001.0001","volume-title":"Atoms in molecules. A Quantum Theory","author":"R.F.W. Bader","year":"1990","unstructured":"Bader, R.F.W.: Atoms in molecules. A Quantum Theory. The Clarendon Press, Oxford (1990)"},{"key":"42_CR18","doi-asserted-by":"publisher","first-page":"33","DOI":"10.1016\/j.molstruc.2004.01.030","volume":"694","author":"P. Kolandaivel","year":"2004","unstructured":"Kolandaivel, P., Nirmala, V.: Study of proper and improper hydrogen bonding using Bader\u2019s atoms in molecules (AIM) theory and NBO analysis. J. Mol. Struct.\u00a0694, 33\u201338 (2004)","journal-title":"J. Mol. Struct."},{"key":"42_CR19","doi-asserted-by":"crossref","unstructured":"Roy, A., Bhattacharyya, M., Bhattacharyya, D.: Structures, Stability and Dynamics of Canonical and Noncanonical base pairs: Quantum Chemical Studies. J. Phys. Chem. B (accepted)","DOI":"10.1021\/jp076921e"},{"key":"42_CR20","doi-asserted-by":"publisher","first-page":"5108","DOI":"10.1093\/nar\/gkg680","volume":"31","author":"X.J. Lu","year":"2003","unstructured":"Lu, X.J., Olson, W.K.: 3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures. Nucleic Acids. Res.\u00a031, 5108\u20135121 (2003)","journal-title":"Nucleic Acids. Res."}],"container-title":["Lecture Notes in Computer Science","Computational Science \u2013 ICCS 2008"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-540-69387-1_42","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,2,28]],"date-time":"2024-02-28T21:41:48Z","timestamp":1709156508000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-540-69387-1_42"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2008]]},"ISBN":["9783540693864","9783540693871"],"references-count":20,"URL":"https:\/\/doi.org\/10.1007\/978-3-540-69387-1_42","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2008]]}}}