{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,5]],"date-time":"2024-09-05T05:30:38Z","timestamp":1725514238269},"publisher-location":"Berlin, Heidelberg","reference-count":16,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540695004"},{"type":"electronic","value":"9783540695011"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"DOI":"10.1007\/978-3-540-69501-1_13","type":"book-chapter","created":{"date-parts":[[2008,6,2]],"date-time":"2008-06-02T07:20:45Z","timestamp":1212391245000},"page":"109-120","source":"Crossref","is-referenced-by-count":0,"title":["Examining the Feasibility of Reconfigurable Models for Molecular Dynamics Simulation"],"prefix":"10.1007","author":[{"given":"Eunjung","family":"Cho","sequence":"first","affiliation":[]},{"given":"Anu G.","family":"Bourgeois","sequence":"additional","affiliation":[]},{"given":"Jos\u00e9 Alberto","family":"Fern\u00e1ndez-Zepeda","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"key":"13_CR1","doi-asserted-by":"crossref","unstructured":"Alam, S.R., Vetter, J.S., Agarwal, P.K.: Performance characterization of molecular dynamics techniques for biomolecular simulations. In: Proceedings of the eleventh ACM SIGPLAN symposium on Principles and practice of parallel programming, pp. 59\u201368 (2006)","DOI":"10.1145\/1122971.1122983"},{"key":"13_CR2","doi-asserted-by":"crossref","DOI":"10.1017\/CBO9780511816581","volume-title":"The Art of Molecular Dynamics Simulation","author":"D.C. Rapaport","year":"2004","unstructured":"Rapaport, D.C.: The Art of Molecular Dynamics Simulation. Cambridge University Press, Cambridge (2004)"},{"key":"13_CR3","doi-asserted-by":"publisher","first-page":"6578","DOI":"10.1063\/1.1352646","volume":"114","author":"C. Sagui","year":"2001","unstructured":"Sagui, C., Darden, T.: Multigrid methods for classical molecular dynamics simulations of biomolecules. The Journal of Chemical Physics\u00a0114, 6578 (2001)","journal-title":"The Journal of Chemical Physics"},{"key":"13_CR4","doi-asserted-by":"crossref","unstructured":"Alam, S.R., Agarwal, P.K.: On the Path to Enable Multi-scale Biomolecular Simulations on PetaFLOPS Supercomputer with Multi-core Processors. In: Sixth IEEE International Workshop on High Performance Computational Biology (HiCOMB) (2007)","DOI":"10.1109\/IPDPS.2007.370443"},{"issue":"2-3","key":"13_CR5","doi-asserted-by":"publisher","first-page":"73","DOI":"10.1016\/0010-4655(96)00016-1","volume":"95","author":"A.Y. Toukmaji","year":"1996","unstructured":"Toukmaji, A.Y., Board, J.A.: Ewald summation techniques in perspective: a survey. Computer Physics Communications\u00a095(2-3), 73\u201392 (1996)","journal-title":"Computer Physics Communications"},{"issue":"6","key":"13_CR6","doi-asserted-by":"publisher","first-page":"673","DOI":"10.1002\/jcc.10072","volume":"23","author":"R.D. Skeel","year":"2002","unstructured":"Skeel, R.D., Tezcan, I., Hardy, D.J.: Multiple grid methods for classical molecular dynamics. Journal of Computational Chemistry, 2002\u00a023(6), 673\u2013684 (2002)","journal-title":"Journal of Computational Chemistry, 2002"},{"issue":"1","key":"13_CR7","doi-asserted-by":"publisher","first-page":"327","DOI":"10.1088\/1742-6596\/46\/1\/046","volume":"46","author":"P.K. Agarwal","year":"2006","unstructured":"Agarwal, P.K., Alam, S.R.: Biomolecular simulations on petascale: promises and challenges. Journal of Physics: Conference Series\u00a046(1), 327\u2013333 (2006)","journal-title":"Journal of Physics: Conference Series"},{"issue":"12","key":"13_CR8","doi-asserted-by":"publisher","first-page":"1546","DOI":"10.1002\/(SICI)1096-987X(199709)18:12<1546::AID-JCC11>3.0.CO;2-I","volume":"18","author":"Y. Komeiji","year":"1997","unstructured":"Komeiji, Y., et al.: Fast and accurate molecular dynamics simulation of a protein using a special-purpose computer. Journal of Computational Chemistry, 1997\u00a018(12), 1546\u20131563 (1997)","journal-title":"Journal of Computational Chemistry, 1997"},{"issue":"2","key":"13_CR9","doi-asserted-by":"publisher","first-page":"185","DOI":"10.1002\/(SICI)1096-987X(19990130)20:2<185::AID-JCC1>3.0.CO;2-L","volume":"20","author":"S. Toyoda","year":"1999","unstructured":"Toyoda, S., et al.: Development of MD Engine: High-speed accelerator with parallel processor design for molecular dynamics simulations. Journal of Computational Chemistry\u00a020(2), 185\u2013199 (1999)","journal-title":"Journal of Computational Chemistry"},{"key":"13_CR10","doi-asserted-by":"crossref","unstructured":"Vaidyanathan, R., Trahan, J.L.: Dynamic Reconfiguration: Architectures and Algorithms. Plenum Pub Corp. (2003)","DOI":"10.1007\/b100618"},{"key":"13_CR11","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"256","DOI":"10.1007\/978-3-540-74742-0_25","volume-title":"Parallel and Distributed Processing and Applications","author":"E. Cho","year":"2007","unstructured":"Cho, E., Bourgeois, A.G., Tan, F.: An FPGA Design to Achieve Fast and Accurate Results for Molecular Dynamics Simulations. In: Stojmenovic, I., Thulasiram, R.K., Yang, L.T., Jia, W., Guo, M., de Mello, R.F. (eds.) ISPA 2007. LNCS, vol.\u00a04742, p. 256. Springer, Heidelberg (2007)"},{"key":"13_CR12","doi-asserted-by":"crossref","unstructured":"Azizi, N., et al.: Reconfigurable molecular dynamics simulator. In: Annual IEEE Symposium on Field-Programmable Custom Computing Machines, FCCM 2004, pp. 197\u2013206 (2004)","DOI":"10.1109\/FCCM.2004.48"},{"issue":"3","key":"13_CR13","doi-asserted-by":"publisher","first-page":"189","DOI":"10.1049\/ip-cdt:20050182","volume":"153","author":"Y. Gu","year":"2006","unstructured":"Gu, Y., VanCourt, T., Herbordt, M.C.: Accelerating molecular dynamics simulations with configurable circuits. Computers and Digital Techniques, IEE Proceedings\u00a0153(3), 189\u2013195 (2006)","journal-title":"Computers and Digital Techniques, IEE Proceedings"},{"issue":"1","key":"13_CR14","doi-asserted-by":"publisher","first-page":"111","DOI":"10.1142\/S0129626495000102","volume":"5","author":"K. Nakano","year":"1995","unstructured":"Nakano, K.: A Bibliography of Published Papers on Dynamically Reconfigurable Architectures. Parallel Processing Letters\u00a05(1), 111\u2013124 (1995)","journal-title":"Parallel Processing Letters"},{"key":"13_CR15","doi-asserted-by":"crossref","unstructured":"Rankin, W.T., Board Jr., J.A.: A portable distributed implementation of the parallel multipoletree algorithm. In: Proceedings of the Fourth IEEE International Symposium on High Performance Distributed Computing, 1995, pp. 17\u201322 (1995)","DOI":"10.1109\/HPDC.1995.518690"},{"issue":"3","key":"13_CR16","doi-asserted-by":"publisher","first-page":"255","DOI":"10.1023\/A:1007907925007","volume":"11","author":"M. Crowley","year":"1997","unstructured":"Crowley, M., et al.: Adventures in Improving the Scaling and Accuracy of a Parallel Molecular Dynamics Program. The Journal of Supercomputing\u00a011(3), 255\u2013278 (1997)","journal-title":"The Journal of Supercomputing"}],"container-title":["Lecture Notes in Computer Science","Algorithms and Architectures for Parallel Processing"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-540-69501-1_13.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,5,3]],"date-time":"2021-05-03T04:41:55Z","timestamp":1620016915000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-540-69501-1_13"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[null]]},"ISBN":["9783540695004","9783540695011"],"references-count":16,"URL":"https:\/\/doi.org\/10.1007\/978-3-540-69501-1_13","relation":{},"subject":[]}}