{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,11]],"date-time":"2026-02-11T13:49:10Z","timestamp":1770817750464,"version":"3.50.1"},"publisher-location":"Berlin, Heidelberg","reference-count":27,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"value":"9783540698272","type":"print"},{"value":"9783540698289","type":"electronic"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"DOI":"10.1007\/978-3-540-69828-9_12","type":"book-chapter","created":{"date-parts":[[2008,8,12]],"date-time":"2008-08-12T16:07:43Z","timestamp":1218557263000},"page":"124-131","source":"Crossref","is-referenced-by-count":118,"title":["Bgee: Integrating and Comparing Heterogeneous Transcriptome Data Among Species"],"prefix":"10.1007","author":[{"given":"Frederic","family":"Bastian","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Gilles","family":"Parmentier","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Julien","family":"Roux","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sebastien","family":"Moretti","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Vincent","family":"Laudet","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Marc","family":"Robinson-Rechavi","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"12_CR1","volume-title":"Endless Forms Most Beautiful: The New Science of Evo Devo and The Making of the Animal Kingdom","author":"S. Carroll","year":"2005","unstructured":"Carroll, S.: Endless Forms Most Beautiful: The New Science of Evo Devo and The Making of the Animal Kingdom. W. W. Norton & Company, New York (2005)"},{"key":"12_CR2","doi-asserted-by":"publisher","first-page":"15","DOI":"10.1089\/153623104773547462","volume":"8","author":"I. Yanai","year":"2004","unstructured":"Yanai, I., Graur, D., et al.: Incongruent expression profiles between human and mouse orthologous genes suggest widespread neutral evolution of transcription control. Omics\u00a08, 15\u201324 (2004)","journal-title":"Omics"},{"key":"12_CR3","doi-asserted-by":"publisher","first-page":"119","DOI":"10.1016\/j.gene.2004.11.034","volume":"345","author":"I.K. Jordan","year":"2005","unstructured":"Jordan, I.K., Marino-Ramirez, L., et al.: Evolutionary significance of gene expression divergence. Gene\u00a0345, 119\u2013126 (2005)","journal-title":"Gene"},{"key":"12_CR4","doi-asserted-by":"publisher","first-page":"58","DOI":"10.1186\/1471-2164-5-58","volume":"5","author":"M. Schlicht","year":"2004","unstructured":"Schlicht, M., Matysiak, B., et al.: Cross-species global and subset gene expression profiling identifies genes involved in prostate cancer response to selenium. BMC Genomics\u00a05, 58 (2004)","journal-title":"BMC Genomics"},{"key":"12_CR5","doi-asserted-by":"publisher","first-page":"609","DOI":"10.1016\/S0168-9525(02)02837-8","volume":"18","author":"Z. Gu","year":"2002","unstructured":"Gu, Z., Nicolae, D., et al.: Rapid divergence in expression between duplicate genes inferred from microarray data. Trends Genet\u00a018, 609\u2013613 (2002)","journal-title":"Trends Genet"},{"key":"12_CR6","doi-asserted-by":"publisher","first-page":"707","DOI":"10.1073\/pnas.0409186102","volume":"102","author":"X. Gu","year":"2005","unstructured":"Gu, X., Zhang, Z., et al.: Rapid evolution of expression and regulatory divergences after yeast gene duplication. Proc. Natl. Acad. Sci. USA\u00a0102, 707\u2013712 (2005)","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"12_CR7","doi-asserted-by":"publisher","first-page":"1157","DOI":"10.1534\/genetics.104.037051","volume":"169","author":"X. He","year":"2005","unstructured":"He, X., Zhang, J.: Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution. Genetics\u00a0169, 1157\u20131164 (2005)","journal-title":"Genetics"},{"key":"12_CR8","doi-asserted-by":"publisher","first-page":"241","DOI":"10.1093\/nar\/gkg027","volume":"31","author":"J. Sprague","year":"2003","unstructured":"Sprague, J., Clements, D., et al.: The Zebrafish Information Network (ZFIN): the zebrafish model organism database. Nucleic Acids Res.\u00a031, 241\u2013243 (2003)","journal-title":"Nucleic Acids Res."},{"key":"12_CR9","volume-title":"Ontology Matching","author":"P. Shvaiko","year":"2007","unstructured":"Shvaiko, P., Euzenat, J.: Ontology Matching. Springer, Heidelberg (2007)"},{"key":"12_CR10","doi-asserted-by":"publisher","first-page":"1251","DOI":"10.1038\/nbt1346","volume":"25","author":"B. Smith","year":"2007","unstructured":"Smith, B., Ashburner, M., et al.: The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nat. Biotechnol.\u00a025, 1251\u20131255 (2007)","journal-title":"Nat. Biotechnol."},{"key":"12_CR11","doi-asserted-by":"publisher","first-page":"230","DOI":"10.1080\/10635150590923227","volume":"54","author":"J.E. Jeffery","year":"2005","unstructured":"Jeffery, J.E., Bininda-Emonds, O.R., et al.: A new technique for identifying sequence heterochrony. Syst. Biol.\u00a054, 230\u2013240 (2005)","journal-title":"Syst. Biol."},{"key":"12_CR12","doi-asserted-by":"crossref","unstructured":"Lee, C.K., Sunkin, S.M., et al.: Quantitative methods for genome-scale analysis of in situ hybridization and correlation with microarray data. Genome biology\u00a09, R23 (2008)","DOI":"10.1186\/gb-2008-9-1-r23"},{"key":"12_CR13","doi-asserted-by":"publisher","first-page":"832","DOI":"10.1038\/nbt1217","volume":"24","author":"W.P. Kuo","year":"2006","unstructured":"Kuo, W.P., Liu, F., et al.: A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies. Nat. Biotechnol.\u00a024, 832\u2013840 (2006)","journal-title":"Nat. Biotechnol."},{"key":"12_CR14","doi-asserted-by":"crossref","first-page":"13","DOI":"10.1093\/nar\/gkm1000","volume":"36","author":"D.L. Wheeler","year":"2008","unstructured":"Wheeler, D.L., Barrett, T., et al.: Database resources of the National Center for Biotechnology Information. Nucleic Acids Res.\u00a036, 13\u201321 (2008)","journal-title":"Nucleic Acids Res."},{"key":"12_CR15","doi-asserted-by":"crossref","first-page":"747","DOI":"10.1093\/nar\/gkl995","volume":"35","author":"H. Parkinson","year":"2007","unstructured":"Parkinson, H., Kapushesky, M., et al.: ArrayExpress\u2013a public database of microarray experiments and gene expression profiles. Nucleic Acids Res.\u00a035, 747\u2013750 (2007)","journal-title":"Nucleic Acids Res."},{"key":"12_CR16","doi-asserted-by":"crossref","first-page":"986","DOI":"10.1101\/gr.7.10.986","volume":"7","author":"S. Audic","year":"1997","unstructured":"Audic, S., Claverie, J.M.: The significance of digital gene expression profiles. Genome Res.\u00a07, 986\u2013995 (1997)","journal-title":"Genome Res."},{"key":"12_CR17","doi-asserted-by":"publisher","first-page":"1593","DOI":"10.1093\/bioinformatics\/18.12.1593","volume":"18","author":"W.M. Liu","year":"2002","unstructured":"Liu, W.M., Mei, R., et al.: Analysis of high density expression microarrays with signed-rank call algorithms. Bioinformatics\u00a018, 1593\u20131599 (2002)","journal-title":"Bioinformatics"},{"key":"12_CR18","doi-asserted-by":"crossref","unstructured":"Choe, S.E., Boutros, M., et al.: Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset. Genome biology\u00a06, R16 (2005)","DOI":"10.1186\/gb-2005-6-2-r16"},{"key":"12_CR19","doi-asserted-by":"crossref","unstructured":"Schuster, E.F., Blanc, E., et al.: Correcting for sequence biases in present\/absent calls. Genome biology\u00a08, R125 (2007)","DOI":"10.1186\/gb-2007-8-6-r125"},{"key":"12_CR20","doi-asserted-by":"publisher","first-page":"909","DOI":"10.1198\/016214504000000683","volume":"99","author":"Z. Wu","year":"2004","unstructured":"Wu, Z., Irizarry, R.A., et al.: A Model-Based Background Adjustment for Oligonucleotide Expression Arrays. Journal of the American Statistical Association\u00a099, 909\u2013917 (2004)","journal-title":"Journal of the American Statistical Association"},{"key":"12_CR21","doi-asserted-by":"crossref","unstructured":"Kruger, A., Hofmann, O., et al.: Simplified ontologies allowing comparison of developmental mammalian gene expression. Genome biology\u00a08, R229 (2007)","DOI":"10.1186\/gb-2007-8-10-r229"},{"key":"12_CR22","doi-asserted-by":"publisher","first-page":"2773","DOI":"10.1093\/bioinformatics\/bti409","volume":"21","author":"S. Aitken","year":"2005","unstructured":"Aitken, S.: Formalizing concepts of species, sex and developmental stage in anatomical ontologies. Bioinformatics\u00a021, 2773\u20132779 (2005)","journal-title":"Bioinformatics"},{"key":"12_CR23","doi-asserted-by":"publisher","first-page":"630","DOI":"10.1093\/nar\/gkl940","volume":"35","author":"J.T. Eppig","year":"2007","unstructured":"Eppig, J.T., Blake, J.A., et al.: The mouse genome database (MGD): new features facilitating a model system. Nucleic Acids Res.\u00a035, 630\u2013637 (2007)","journal-title":"Nucleic Acids Res."},{"key":"12_CR24","doi-asserted-by":"publisher","first-page":"761","DOI":"10.1093\/nar\/gkm826","volume":"36","author":"J.B. Bowes","year":"2008","unstructured":"Bowes, J.B., Snyder, K.A., et al.: Xenbase: a Xenopus biology and genomics resource. Nucleic Acids Res.\u00a036, 761\u2013767 (2008)","journal-title":"Nucleic Acids Res."},{"key":"12_CR25","doi-asserted-by":"crossref","unstructured":"Magdaleno, S., Jensen, P., et al.: BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol.\u00a04, e86 (2006)","DOI":"10.1371\/journal.pbio.0040086"},{"key":"12_CR26","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1038\/75556","volume":"25","author":"M. Ashburner","year":"2000","unstructured":"Ashburner, M., Ball, C.A., et al.: Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nature genetics\u00a025, 25\u201329 (2000)","journal-title":"Nature genetics"},{"key":"12_CR27","doi-asserted-by":"publisher","first-page":"610","DOI":"10.1093\/nar\/gkl996","volume":"35","author":"T.J. Hubbard","year":"2007","unstructured":"Hubbard, T.J., Aken, B.L., et al.: Ensembl 2007. Nucleic Acids Res.\u00a035, 610\u2013617 (2007)","journal-title":"Nucleic Acids Res."}],"container-title":["Lecture Notes in Computer Science","Data Integration in the Life Sciences"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-540-69828-9_12.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,5,3]],"date-time":"2021-05-03T04:09:08Z","timestamp":1620014948000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-540-69828-9_12"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[null]]},"ISBN":["9783540698272","9783540698289"],"references-count":27,"URL":"https:\/\/doi.org\/10.1007\/978-3-540-69828-9_12","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"value":"0302-9743","type":"print"},{"value":"1611-3349","type":"electronic"}],"subject":[]}}