{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,5]],"date-time":"2024-09-05T04:52:15Z","timestamp":1725511935293},"publisher-location":"Berlin, Heidelberg","reference-count":15,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540712329"},{"type":"electronic","value":"9783540712336"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"DOI":"10.1007\/978-3-540-71233-6_22","type":"book-chapter","created":{"date-parts":[[2007,5,20]],"date-time":"2007-05-20T20:31:34Z","timestamp":1179693094000},"page":"278-291","source":"Crossref","is-referenced-by-count":0,"title":["Stem Kernels for RNA Sequence Analyses"],"prefix":"10.1007","author":[{"given":"Yasubumi","family":"Sakakibara","sequence":"first","affiliation":[]},{"given":"Kiyoshi","family":"Asai","sequence":"additional","affiliation":[]},{"given":"Kengo","family":"Sato","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"key":"22_CR1","doi-asserted-by":"crossref","DOI":"10.1017\/CBO9780511790492","volume-title":"Biological Sequence Analysis","author":"R. Durbin","year":"1998","unstructured":"Durbin, R., Eddy, S., Krogh, A., Mitchison, G.: Biological Sequence Analysis. Cambridge University Press, Cambridge (1998)"},{"key":"22_CR2","doi-asserted-by":"publisher","first-page":"919","DOI":"10.1038\/35103511","volume":"2","author":"S. Eddy","year":"2001","unstructured":"Eddy, S.: Noncoding RNA genes and the modern RNA world. Nature Reviews Genetics\u00a02, 919\u2013929 (2001)","journal-title":"Nature Reviews Genetics"},{"key":"22_CR3","doi-asserted-by":"publisher","first-page":"439","DOI":"10.1093\/nar\/gkg006","volume":"31","author":"S. Griffiths-Jones","year":"2003","unstructured":"Griffiths-Jones, S., Bateman, A., Marshall, M., Khanna, A., Eddy, S.: Rfam: an RNA family database. Nucleic Acids Research\u00a031, 439\u2013441 (2003), RNA families database of alignments and CMs: \n                    \n                      http:\/\/www.sanger.ac.uk\/Software\/Rfam\/","journal-title":"Nucleic Acids Research"},{"key":"22_CR4","first-page":"112","volume":"13","author":"T. Kin","year":"2002","unstructured":"Kin, T., Tsuda, K., Asai, K.: Marginalized kernels for RNA sequence data analysis. Genome Informatics\u00a013, 112\u2013122 (2002)","journal-title":"Genome Informatics"},{"key":"22_CR5","doi-asserted-by":"publisher","first-page":"419","DOI":"10.1162\/153244302760200687","volume":"2","author":"H. Lodhi","year":"2002","unstructured":"Lodhi, H., Saunders, C., Shawe-Taylor, J., Cristianini, N., Watkins, C.: Text classification using string kernels. Journal of Machine Learning Research\u00a02, 419\u2013444 (2002)","journal-title":"Journal of Machine Learning Research"},{"key":"22_CR6","doi-asserted-by":"publisher","first-page":"1168","DOI":"10.1126\/science.283.5405.1168","volume":"283","author":"T.M. Lowe","year":"1999","unstructured":"Lowe, T.M., Eddy, S.: A computational screen for methylation guide snoRNAs in yeast. Science\u00a0283, 1168\u20131171 (1999), \n                    \n                      http:\/\/lowelab.ucsc.edu\/snoscan\/","journal-title":"Science"},{"key":"22_CR7","doi-asserted-by":"publisher","first-page":"1105","DOI":"10.1002\/bip.360290621","volume":"29","author":"J.S. McCaskill","year":"1990","unstructured":"McCaskill, J.S.: The equilibrium partition function and base pair binding probabilities for RNA secondary structure. Biopolymers\u00a029, 1105\u20131119 (1990)","journal-title":"Biopolymers"},{"key":"22_CR8","doi-asserted-by":"publisher","first-page":"36","DOI":"10.1016\/j.virol.2003.10.023","volume":"321","author":"D. Matsuda","year":"2004","unstructured":"Matsuda, D., Dreher, T.W.: The tRNA-like structure of Turnip yellow mosaic virus RNA is a 3V-translational enhancer. Virology\u00a0321, 36\u201346 (2004)","journal-title":"Virology"},{"key":"22_CR9","doi-asserted-by":"publisher","first-page":"2611","DOI":"10.1093\/bioinformatics\/bti385","volume":"21","author":"H. Matsui","year":"2005","unstructured":"Matsui, H., Sato, K., Sakakibara, Y.: Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures. Bioinformatics\u00a021, 2611\u20132617 (2005)","journal-title":"Bioinformatics"},{"key":"22_CR10","doi-asserted-by":"publisher","first-page":"5112","DOI":"10.1093\/nar\/22.23.5112","volume":"22","author":"Y. Sakakibara","year":"1994","unstructured":"Sakakibara, Y., Brown, M., Hughey, R., Mian, I.S., Sjolander, K., Underwood, R.C., Haussler, D.: Stochastic context-free grammars for tRNA modeling. Nucleic Acids Research\u00a022, 5112\u20135120 (1994)","journal-title":"Nucleic Acids Research"},{"key":"22_CR11","doi-asserted-by":"publisher","first-page":"232","DOI":"10.1093\/bioinformatics\/btg1032","volume":"19","author":"Y. Sakakibara","year":"2003","unstructured":"Sakakibara, Y.: Pair hidden Markov models on tree structures. Bioinformatics\u00a019, i232\u2013i240 (2003)","journal-title":"Bioinformatics"},{"key":"22_CR12","doi-asserted-by":"publisher","first-page":"810","DOI":"10.1137\/0145048","volume":"45","author":"D. Sankoff","year":"1985","unstructured":"Sankoff, D.: Simultaneous solution of the RNA folding, alignment and protosequence problems. SIAM Journal on Applied Mathematics\u00a045, 810\u2013825 (1985)","journal-title":"SIAM Journal on Applied Mathematics"},{"key":"22_CR13","first-page":"237","volume":"21","author":"K. Sato","year":"2005","unstructured":"Sato, K., Sakakibara, Y.: RNA secondary structural alignment with conditional random fields. Bioinformatics\u00a021, ii237\u2013ii242 (2005)","journal-title":"Bioinformatics"},{"key":"22_CR14","doi-asserted-by":"crossref","DOI":"10.1017\/CBO9780511809682","volume-title":"Kernel Methods for Pattern Analysis","author":"J. Shawe-Taylor","year":"2004","unstructured":"Shawe-Taylor, J., Cristianini, N.: Kernel Methods for Pattern Analysis. Cambridge University Press, Cambridge (2004)"},{"key":"22_CR15","doi-asserted-by":"publisher","first-page":"133","DOI":"10.1093\/nar\/9.1.133","volume":"9","author":"M. Zuker","year":"1981","unstructured":"Zuker, M., Stiegler, P.: Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Research\u00a09, 133\u2013148 (1981)","journal-title":"Nucleic Acids Research"}],"container-title":["Lecture Notes in Computer Science","Bioinformatics Research and Development"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-540-71233-6_22.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,11,19]],"date-time":"2020-11-19T00:17:21Z","timestamp":1605745041000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-540-71233-6_22"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[null]]},"ISBN":["9783540712329","9783540712336"],"references-count":15,"URL":"https:\/\/doi.org\/10.1007\/978-3-540-71233-6_22","relation":{},"subject":[]}}