{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,5]],"date-time":"2024-09-05T04:57:00Z","timestamp":1725512220176},"publisher-location":"Berlin, Heidelberg","reference-count":28,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540716808"},{"type":"electronic","value":"9783540716815"}],"license":[{"start":{"date-parts":[[2007,1,1]],"date-time":"2007-01-01T00:00:00Z","timestamp":1167609600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2007]]},"DOI":"10.1007\/978-3-540-71681-5_10","type":"book-chapter","created":{"date-parts":[[2007,5,17]],"date-time":"2007-05-17T12:07:05Z","timestamp":1179403625000},"page":"137-150","source":"Crossref","is-referenced-by-count":1,"title":["Estimating Genome-Wide Copy Number Using Allele Specific Mixture Models"],"prefix":"10.1007","author":[{"given":"Wenyi","family":"Wang","sequence":"first","affiliation":[]},{"given":"Benilton","family":"Carvalho","sequence":"additional","affiliation":[]},{"given":"Nate","family":"Miller","sequence":"additional","affiliation":[]},{"given":"Jonathan","family":"Pevsner","sequence":"additional","affiliation":[]},{"given":"Aravinda","family":"Chakravarti","sequence":"additional","affiliation":[]},{"given":"Rafael A.","family":"Irizarry","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"issue":"2","key":"10_CR1","doi-asserted-by":"publisher","first-page":"287","DOI":"10.1101\/gr.2012304","volume":"14","author":"G.R. Bignell","year":"2004","unstructured":"Bignell, G.R., Huang, J., Greshock, J., Watt, S., Butler, A., West, S., Grigorova, M., Jones, K.W., Wei, W., Stratton, M.R., Futreal, P.A., Weber, B., Shapero, M.H., Wooster, R.: High-resolution analysis of DNA copy number using oligonucleotide microarrays. Genome Res.\u00a014(2), 287\u2013295 (2004)","journal-title":"Genome Res."},{"key":"10_CR2","doi-asserted-by":"crossref","unstructured":"Carvalho, B., Speed, T.P., Irizarry, R.A.: Exploration, normalization, and genotype calls of high density oligonucleotide snp array data. Johns Hopkins University, Dept. of Biostatistics Working Papers (111) (2006)","DOI":"10.1093\/biostatistics\/kxl042"},{"issue":"12","key":"10_CR3","doi-asserted-by":"crossref","first-page":"1229","DOI":"10.1101\/gr.8.12.1229","volume":"8","author":"F.S. Collins","year":"1998","unstructured":"Collins, F.S., Brooks, L.D., Chakravarti, A.: A DNA polymorphism discovery resource for research on human genetic variation. Genome Res.\u00a08(12), 1229\u20131231 (1998)","journal-title":"Genome Res."},{"issue":"1","key":"10_CR4","doi-asserted-by":"publisher","first-page":"75","DOI":"10.1038\/ng1697","volume":"38","author":"D.F. Conrad","year":"2006","unstructured":"Conrad, D.F., Andrews, T.D., Carter, N.P., Hurles, M.E., Pritchard, J.K.: A high-resolution survey of deletion polymorphism in the human genome. Nat. Genet.\u00a038(1), 75\u201381 (2006)","journal-title":"Nat. Genet."},{"issue":"2","key":"10_CR5","doi-asserted-by":"publisher","first-page":"85","DOI":"10.1038\/nrg1767","volume":"7","author":"L. Feuk","year":"2006","unstructured":"Feuk, L., Carson, A.R., Scherer, S.W.: Structural variation in the human genome. Nat. Rev. Genet.\u00a07(2), 85\u201397 (2006)","journal-title":"Nat. Rev. Genet."},{"key":"10_CR6","doi-asserted-by":"crossref","unstructured":"Gribble, S.M., Kalaitzopoulos, D., Burford, D.C., Prigmore, E., Selzer, R.R., Ng, B.L., Matthews, N.S.W., Porter, K.M., Curley, R., Lindasy, S.J., Baptista, J., Richmond, T.A., Carter, N.P.: Ultra-high resolution array painting facilitates breakpoint sequencing. J. Med. Genet. (Sept. 2006)","DOI":"10.1136\/jmg.2006.044909"},{"issue":"1","key":"10_CR7","doi-asserted-by":"publisher","first-page":"82","DOI":"10.1038\/ng1695","volume":"38","author":"D.A. Hinds","year":"2006","unstructured":"Hinds, D.A., Kloek, A.P., Jen, M., Chen, X., Frazer, K.A.: Common deletions and SNPs are in linkage disequilibrium in the human genome. Nat. Genet.\u00a038(1), 82\u201385 (2006)","journal-title":"Nat. Genet."},{"key":"10_CR8","doi-asserted-by":"publisher","first-page":"83","DOI":"10.1186\/1471-2105-7-83","volume":"7","author":"J. Huang","year":"2006","unstructured":"Huang, J., Wei, W., Chen, J., Zhang, J., Liu, G., Di, X., Mei, R., Ishikawa, S., Aburatani, H., Jones, K.W., Shapero, M.H.: CARAT: a novel method for allelic detection of DNA copy number changes using high density oligonucleotide arrays. BMC Bioinformatics\u00a07, 83 (2006)","journal-title":"BMC Bioinformatics"},{"issue":"4","key":"10_CR9","doi-asserted-by":"crossref","first-page":"287","DOI":"10.1186\/1479-7364-1-4-287","volume":"1","author":"J. Huang","year":"2004","unstructured":"Huang, J., Wei, W., Zhang, J., Liu, G., Bignell, G.R., Stratton, M.R., Futreal, P.A., Wooster, R., Jones, K.W., Shapero, M.H.: Whole genome DNA copy number changes identified by high density oligonucleotide arrays. Hum. Genomics.\u00a01(4), 287\u2013299 (2004)","journal-title":"Hum. Genomics."},{"key":"10_CR10","doi-asserted-by":"crossref","unstructured":"Huber, W., von Heydebreck, A., Sueltmann, H., Poutska, A., Vingron, M.: Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics\u00a01 (2002)","DOI":"10.1093\/bioinformatics\/18.suppl_1.S96"},{"issue":"9","key":"10_CR11","doi-asserted-by":"publisher","first-page":"949","DOI":"10.1038\/ng1416","volume":"36","author":"A. Iafrate","year":"2004","unstructured":"Iafrate, A., Feuk, L., Rivera, M., Listewnik, M., Donahoe, P., Qi, Y., Scherer, S., Lee, C.: Detection of large-scale variation in the human genome. Nature Genetics\u00a036(9), 949\u2013951 (2004)","journal-title":"Nature Genetics"},{"key":"10_CR12","doi-asserted-by":"publisher","first-page":"249","DOI":"10.1093\/biostatistics\/4.2.249","volume":"4","author":"R. Irizarry","year":"2003","unstructured":"Irizarry, R., Hobbs, F.C.B., Beaxer-Barclay, Y., Antonellis, K., Scherf, U., Speed, T.: Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics\u00a04, 249\u2013264 (2003)","journal-title":"Biostatistics"},{"issue":"4","key":"10_CR13","doi-asserted-by":"publisher","first-page":"1309","DOI":"10.1016\/j.bbrc.2005.06.040","volume":"333","author":"S. Ishikawa","year":"2005","unstructured":"Ishikawa, S., Komura, D., Tsuji, S., Nishimura, K., Yamamoto, S., Panda, B., Huang, J., Fukayama, M., Jones, K.W., Aburatani, H.: Allelic dosage analysis with genotyping microarrays. Biochem. Biophys. Res. Commun.\u00a0333(4), 1309\u20131314 (2005)","journal-title":"Biochem. Biophys. Res. Commun."},{"key":"10_CR14","doi-asserted-by":"publisher","first-page":"1233","DOI":"10.1038\/nbt869","volume":"21","author":"G.C. Kennedy","year":"2003","unstructured":"Kennedy, G.C., Matsuzaki, H., Dong, S., Min Liu, W., Huang, J., Liu, G., Su, X., Cao, M., Chen, W., Zhang, J., Liu, W., Yang, G., Di, X., Ryder, T., He, Z., Surti, U., Phillips, M.S., Boyce-Jacino, M.T., Fodor, S.P., Jones, K.W.: Large-scale genotyping of complex DNA. Nature Biotechnology\u00a021, 1233\u20131237 (2003)","journal-title":"Nature Biotechnology"},{"issue":"1-2","key":"10_CR15","first-page":"0009","volume":"6","author":"D. Komura","year":"2006","unstructured":"Komura, D., Nishimura, K., Ishikawa, S., Panda, B., Huang, J., Nakamura, H., Ihara, S., Hirose, M., Jones, K.W., Aburatani, H.: Noise Reduction from genotyping microarrays using probe level information. Silico. Biol. 6(1-2):0009 (Feb. 2006)","journal-title":"Silico. Biol."},{"key":"10_CR16","doi-asserted-by":"crossref","unstructured":"Laframboise, T., Harrington, D., Weir, B.A.: PLASQ: A Generalized Linear Model-Based Procedure to Determine Allelic Dosage in Cancer Cells from SNP Array Data. Biostatistics (June 2006)","DOI":"10.1093\/biostatistics\/kxl012"},{"key":"10_CR17","doi-asserted-by":"publisher","first-page":"31","DOI":"10.1073\/pnas.011404098","volume":"98","author":"C. Li","year":"2001","unstructured":"Li, C., Wong, W.: Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection. Proceedings of the National Academy of Science U S A\u00a098, 31\u201336 (2001)","journal-title":"Proceedings of the National Academy of Science U S A"},{"issue":"1","key":"10_CR18","doi-asserted-by":"publisher","first-page":"86","DOI":"10.1038\/ng1696","volume":"38","author":"S.A. McCarroll","year":"2006","unstructured":"McCarroll, S.A., Hadnott, T.N., Perry, G.H., Sabeti, P.C., Zody, M.C., Barrett, J.C., Dallaire, S., Gabriel, S.B., Lee, C., Daly, M.J., Altshuler, D.M., Consortium, I.H.: Common deletion polymorphisms in the human genome. Nat. Genet.\u00a038(1), 86\u201392 (2006)","journal-title":"Nat. Genet."},{"issue":"14","key":"10_CR19","doi-asserted-by":"publisher","first-page":"6071","DOI":"10.1158\/0008-5472.CAN-05-0465","volume":"65","author":"Y. Nannya","year":"2005","unstructured":"Nannya, Y., Sanada, M., Nakazaki, K., Hosoya, N., Wang, L., Hangaishi, A., Kurokawa, M., Chiba, S., Bailey, D.K., Kennedy, G.C., Ogawa, S.: A robust algorithm for copy number detection using high-density oligonucleotide single nucleotide polymorphism genotyping arrays. Cancer Res.\u00a065(14), 6071\u20136079 (2005)","journal-title":"Cancer Res."},{"issue":"9","key":"10_CR20","doi-asserted-by":"publisher","first-page":"1136","DOI":"10.1101\/gr.5402306","volume":"16","author":"D.A. Peiffer","year":"2006","unstructured":"Peiffer, D.A., Le, J.M., Steemers, F.J., Chang, W., Jenniges, T., Garcia, F., Haden, K., Li, J., Shaw, C.A., Belmont, J., Cheung, S.W., Shen, R.M., Barker, D.L., Gunderson, K.L.: High-resolution genomic profiling of chromosomal aberrations using Infinium whole-genome genotyping. Genome Res.\u00a016(9), 1136\u20131148 (2006)","journal-title":"Genome Res."},{"issue":"1","key":"10_CR21","doi-asserted-by":"publisher","first-page":"7","DOI":"10.1093\/bioinformatics\/bti741","volume":"22","author":"N. Rabbee","year":"2006","unstructured":"Rabbee, N., Speed, T.P.: A genotype calling algorithm for affymetrix SNP arrays. Bioinformatics\u00a022(1), 7\u201312 (2006)","journal-title":"Bioinformatics"},{"issue":"6","key":"10_CR22","doi-asserted-by":"publisher","first-page":"557","DOI":"10.1089\/106652701753307485","volume":"8","author":"D.M. Rocke","year":"2001","unstructured":"Rocke, D.M., Durbin, B.: A model for measurement error for gene expression arrays. J. Comput. Biol.\u00a08(6), 557\u2013569 (2001)","journal-title":"J. Comput. Biol."},{"key":"10_CR23","doi-asserted-by":"publisher","first-page":"525","DOI":"10.1126\/science.1098918","volume":"305","author":"J. Sebat","year":"2004","unstructured":"Sebat, J., Lakshmi, B., Troge, J., Alexander, J., Young, J., Lundin, P., Maner, S., Massa, H., Walker, M., Chi, M., Navin, N., Lucito, R., Healy, J., Hicks, J., Ye, K., Reiner, A., Gilliam, T., Trask, B., Patterson, N., Zetterberg, A., Wigler, M.: Large-scale copy number polymorphism in the human genome. Science\u00a0305, 525\u2013528 (2004)","journal-title":"Science"},{"issue":"9","key":"10_CR24","doi-asserted-by":"publisher","first-page":"1038","DOI":"10.1038\/ng1862","volume":"38","author":"A.J. Sharp","year":"2006","unstructured":"Sharp, A.J., Hansen, S., Selzer, R.R., Cheng, Z., Regan, R., Hurst, J.A., Stewart, H., Price, S.M., Blair, E., Hennekam, R.C., Fitzpatrick, C.A., Segraves, R., Richmond, T.A., Guiver, C., Albertson, D.G., Pinkel, D., Eis, P.S., Schwartz, S., Knight, S.J.L., Eichler, E.E.: Discovery of previously unidentified genomic disorders from the duplication architecture of the human genome. Nat. Genet.\u00a038(9), 1038\u20131042 (2006)","journal-title":"Nat. Genet."},{"issue":"1","key":"10_CR25","doi-asserted-by":"publisher","first-page":"78","DOI":"10.1086\/431652","volume":"77","author":"A.J. Sharp","year":"2005","unstructured":"Sharp, A.J., Locke, D.P., McGrath, S.D., Cheng, Z., Bailey, J.A., Vallente, R.U., Pertz, L.M., Clark, R.A., Schwartz, S., Segraves, R., Oseroff, V.V., Albertson, D.G., Pinkel, D., Eichler, E.E.: Segmental duplications and copy-number variation in the human genome. Am. J. Hum. Genet.\u00a077(1), 78\u201388 (2005)","journal-title":"Am. J. Hum. Genet."},{"issue":"7","key":"10_CR26","doi-asserted-by":"publisher","first-page":"727","DOI":"10.1038\/ng1562","volume":"37","author":"E. Tuzun","year":"2005","unstructured":"Tuzun, E., Sharp, A.J., Bailey, J.A., Kaul, R., Morrison, V.A., Pertz, L.M., Haugen, E., Hayden, H., Albertson, D., Pinkel, D., Olson, M.V., Eichler, E.E.: Fine-scale structural variation of the human genome. Nat. Genet.\u00a037(7), 727\u2013732 (2005)","journal-title":"Nat. Genet."},{"key":"10_CR27","doi-asserted-by":"crossref","unstructured":"Wu, Z., Irizarry, R., Gentleman, R., Martinez-Murillo, F., Spencer, F.: A model based background adjustement for oligonucleotide expression arrays. Journal of the America Statistical Association (2004)","DOI":"10.1198\/016214504000000683"},{"issue":"9","key":"10_CR28","doi-asserted-by":"publisher","first-page":"3060","DOI":"10.1158\/0008-5472.CAN-03-3308","volume":"64","author":"X. Zhao","year":"2004","unstructured":"Zhao, X., Li, C., Paez, J.G., Chin, K., Jeanne, P.A., Chen, T.-H., Girard, L., Minna, J., Christiani, D., Leo, C., Gray, J.W., Sellers, W.R., Meyerson, M.: An integrated view of copy number and allelic alterations in the cancer genome using single nucleotide polymorphism arrays. Cancer Res.\u00a064(9), 3060\u20133071 (2004)","journal-title":"Cancer Res."}],"container-title":["Lecture Notes in Computer Science","Research in Computational Molecular Biology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-540-71681-5_10","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,19]],"date-time":"2019-05-19T09:24:53Z","timestamp":1558257893000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-540-71681-5_10"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2007]]},"ISBN":["9783540716808","9783540716815"],"references-count":28,"URL":"https:\/\/doi.org\/10.1007\/978-3-540-71681-5_10","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2007]]}}}