{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,5]],"date-time":"2024-09-05T04:58:22Z","timestamp":1725512302050},"publisher-location":"Berlin, Heidelberg","reference-count":25,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540720300"},{"type":"electronic","value":"9783540720317"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"DOI":"10.1007\/978-3-540-72031-7_36","type":"book-chapter","created":{"date-parts":[[2007,8,5]],"date-time":"2007-08-05T14:16:24Z","timestamp":1186323384000},"page":"394-405","source":"Crossref","is-referenced-by-count":0,"title":["Markov Model Variants for Appraisal of Coding Potential in Plant DNA"],"prefix":"10.1007","author":[{"given":"Michael E.","family":"Sparks","sequence":"first","affiliation":[]},{"given":"Volker","family":"Brendel","sequence":"additional","affiliation":[]},{"given":"Karin S.","family":"Dorman","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"key":"36_CR1","doi-asserted-by":"publisher","first-page":"78","DOI":"10.1006\/jmbi.1997.0951","volume":"268","author":"C. Burge","year":"1997","unstructured":"Burge, C., Karlin, S.: Prediction of complete gene structures in human genomic DNA. Journal of Molecular Biology\u00a0268, 78\u201384 (1997)","journal-title":"Journal of Molecular Biology"},{"key":"36_CR2","doi-asserted-by":"publisher","first-page":"3601","DOI":"10.1093\/nar\/gkg527","volume":"31","author":"W. Majoros","year":"2003","unstructured":"Majoros, W., et al.: GlimmerM, Exonomy and Unveil: three ab initio eukaryotic genefinders. Nucleic Acids Research\u00a031, 3601\u20133604 (2003)","journal-title":"Nucleic Acids Research"},{"key":"36_CR3","doi-asserted-by":"publisher","first-page":"1107","DOI":"10.1093\/nar\/26.4.1107","volume":"26","author":"A. Lukashin","year":"1998","unstructured":"Lukashin, A., Borodovsky, M.: GeneMark.HMM: new solutions for gene finding. Nucleic Acids Research\u00a026, 1107\u20131115 (1998)","journal-title":"Nucleic Acids Research"},{"key":"36_CR4","doi-asserted-by":"publisher","first-page":"993","DOI":"10.1093\/bioinformatics\/bth028","volume":"20","author":"R. Azad","year":"2004","unstructured":"Azad, R., Borodovsky, M.: Effects of choice of DNA sequence model structure on gene identification accuracy. Bioinformatics\u00a020, 993\u20131005 (2004)","journal-title":"Bioinformatics"},{"key":"36_CR5","doi-asserted-by":"publisher","first-page":"544","DOI":"10.1093\/nar\/26.2.544","volume":"26","author":"S. Salzberg","year":"1998","unstructured":"Salzberg, S., et al.: Microbial gene identification using interpolated Markov models. Nucleic Acids Research\u00a026, 544\u2013548 (1998)","journal-title":"Nucleic Acids Research"},{"key":"36_CR6","doi-asserted-by":"publisher","first-page":"4636","DOI":"10.1093\/nar\/27.23.4636","volume":"27","author":"A. Delcher","year":"1999","unstructured":"Delcher, A., et al.: Improved microbial gene identification with GLIMMER. Nucleic Acids Research\u00a027, 4636\u20134641 (1999)","journal-title":"Nucleic Acids Research"},{"key":"36_CR7","doi-asserted-by":"publisher","first-page":"171","DOI":"10.1016\/S0167-6393(98)00018-1","volume":"24","author":"G. Potamianos","year":"1998","unstructured":"Potamianos, G., Jelinek, F.: A study of n-gram and decision tree letter language modeling methods. Speech Communication\u00a024, 171\u2013192 (1998)","journal-title":"Speech Communication"},{"key":"36_CR8","unstructured":"IMMpractical, \n                  \n                    http:\/\/sourceforge.net\/projects\/immpractical\/"},{"key":"36_CR9","unstructured":"TAIR: The Arabidopsis Information Resource, \n                  \n                    http:\/\/www.arabidopsis.org\/"},{"key":"36_CR10","unstructured":"TIGR: The Institute for Genomic Research, \n                  \n                    http:\/\/www.tigr.org\/"},{"key":"36_CR11","doi-asserted-by":"publisher","first-page":"698","DOI":"10.1038\/nrg890","volume":"3","author":"M. Zhang","year":"2000","unstructured":"Zhang, M.: Computational prediction of eukaryotic protein-coding genes. Nature Reviews Genetics\u00a03, 698\u2013709 (2000)","journal-title":"Nature Reviews Genetics"},{"key":"36_CR12","doi-asserted-by":"publisher","first-page":"678","DOI":"10.1101\/gr.4766206","volume":"16","author":"M. Baren van","year":"2006","unstructured":"van Baren, M., Brent, M.: Iterative gene prediction and pseudogene removal improves genome annotation. Genome Research\u00a016, 678\u2013685 (2006)","journal-title":"Genome Research"},{"key":"36_CR13","unstructured":"TIGR XML Specification, \n                  \n                    ftp:\/\/ftp.tigr.org\/pub\/data\/DTDs\/tigrxml.dtd"},{"key":"36_CR14","doi-asserted-by":"publisher","first-page":"55","DOI":"10.1093\/bib\/bbk005","volume":"7","author":"L. Florea","year":"2006","unstructured":"Florea, L.: Bioinformatics of alternative splicing and its regulation. Briefings in Bioinformatics\u00a07, 55\u201369 (2006)","journal-title":"Briefings in Bioinformatics"},{"key":"36_CR15","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","volume":"215","author":"S. Altschul","year":"1990","unstructured":"Altschul, S., et al.: Basic local alignment search tool. Journal of Molecular Biology\u00a0215, 403\u2013410 (1990)","journal-title":"Journal of Molecular Biology"},{"key":"36_CR16","doi-asserted-by":"publisher","first-page":"123","DOI":"10.1016\/0097-8485(93)85004-V","volume":"17","author":"M. Borodovsky","year":"1993","unstructured":"Borodovsky, M., McIninch, J.: GENMARK: Parallel gene recognition for both DNA strands. Computers in Chemistry\u00a017, 123\u2013133 (1993)","journal-title":"Computers in Chemistry"},{"key":"36_CR17","doi-asserted-by":"publisher","first-page":"24","DOI":"10.1006\/geno.1999.5854","volume":"59","author":"S. Salzberg","year":"1999","unstructured":"Salzberg, S., et al.: Interpolated Markov models for eukaryotic gene finding. Genomics\u00a059, 24\u201331 (1999)","journal-title":"Genomics"},{"key":"36_CR18","doi-asserted-by":"crossref","first-page":"iii20","DOI":"10.1093\/bioinformatics\/bti1205","volume":"21","author":"M. Sparks","year":"2005","unstructured":"Sparks, M., Brendel, V.: Incorporation of splice site probability models for non-canonical introns improves gene structure prediction in plants. Bioinformatics 21, iii20\u2013iii30 (2005)","journal-title":"Bioinformatics"},{"key":"36_CR19","doi-asserted-by":"publisher","first-page":"412","DOI":"10.1093\/bioinformatics\/16.5.412","volume":"16","author":"P. Baldi","year":"2000","unstructured":"Baldi, P., et al.: Assessing the accuracy of prediction algorithms for classification: an overview. Bioinformatics\u00a016, 412\u2013424 (2000)","journal-title":"Bioinformatics"},{"key":"36_CR20","doi-asserted-by":"publisher","first-page":"3940","DOI":"10.1093\/bioinformatics\/bti623","volume":"21","author":"T. Sing","year":"2005","unstructured":"Sing, T., et al.: ROCR: visualizing classifier performance in R. Bioinformatics\u00a021, 3940\u20133941 (2005)","journal-title":"Bioinformatics"},{"key":"36_CR21","doi-asserted-by":"publisher","first-page":"264","DOI":"10.1016\/j.sbi.2004.05.007","volume":"14","author":"R. Guig\u00f3","year":"2004","unstructured":"Guig\u00f3, R., Brent, M.: Recent advances in gene structure prediction. Current Opinion in Structural Biology\u00a014, 264\u2013272 (2004)","journal-title":"Current Opinion in Structural Biology"},{"key":"36_CR22","doi-asserted-by":"crossref","unstructured":"Siepel, A., Haussler, D.: Computational identification of evolutionarily conserved exons. In: Proceedings of the 8th Annual International Conference on Research in Computational Biology, pp. 177\u2013186 (2004)","DOI":"10.1145\/974614.974638"},{"key":"36_CR23","doi-asserted-by":"publisher","first-page":"1782","DOI":"10.1093\/bioinformatics\/bti297","volume":"21","author":"W. Majoros","year":"2005","unstructured":"Majoros, W., Pertea, M., Salzberg, S.: Efficient implementation of a generalized pair Hidden Markov model for comparative gene finding. Bioinformatics\u00a021, 1782\u20131788 (2005)","journal-title":"Bioinformatics"},{"key":"36_CR24","doi-asserted-by":"publisher","first-page":"3817","DOI":"10.1073\/pnas.94.8.3817","volume":"94","author":"L. Chen","year":"1997","unstructured":"Chen, L., DeVries, A., Cheng, C.H.: Convergent evolution of antifreeze glycoproteins in Antarctic notothenioid fish and Arctic cod. Proceedings of the National Academy of Sciences USA\u00a094, 3817\u20133822 (1997)","journal-title":"Proceedings of the National Academy of Sciences USA"},{"key":"36_CR25","doi-asserted-by":"publisher","first-page":"13621","DOI":"10.1073\/pnas.152445399","volume":"99","author":"W. Roelofs","year":"2002","unstructured":"Roelofs, W., et al.: Evolution of moth sex pheromones via ancestral genes. Proceedings of the National Academy of Sciences USA\u00a099, 13621\u201313626 (2002)","journal-title":"Proceedings of the National Academy of Sciences USA"}],"container-title":["Lecture Notes in Computer Science","Bioinformatics Research and Applications"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-540-72031-7_36.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,11,19]],"date-time":"2020-11-19T05:28:07Z","timestamp":1605763687000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-540-72031-7_36"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[null]]},"ISBN":["9783540720300","9783540720317"],"references-count":25,"URL":"https:\/\/doi.org\/10.1007\/978-3-540-72031-7_36","relation":{},"subject":[]}}