{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,19]],"date-time":"2025-03-19T11:51:34Z","timestamp":1742385094290,"version":"3.33.0"},"publisher-location":"Berlin, Heidelberg","reference-count":23,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540720300"},{"type":"electronic","value":"9783540720317"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"DOI":"10.1007\/978-3-540-72031-7_42","type":"book-chapter","created":{"date-parts":[[2007,8,5]],"date-time":"2007-08-05T14:16:24Z","timestamp":1186323384000},"page":"465-476","source":"Crossref","is-referenced-by-count":3,"title":["Multiple Sequence Local Alignment Using Monte Carlo EM Algorithm"],"prefix":"10.1007","author":[{"given":"Chengpeng","family":"Bi","sequence":"first","affiliation":[]}],"member":"297","reference":[{"key":"42_CR1","doi-asserted-by":"crossref","unstructured":"MacIsaac, K.D., Fraenkel, E.: Practical Strategies for Discovering Regulatory DNA Sequence Motifs. PLoS Comput. Biol. 2, e36 (2006)","DOI":"10.1371\/journal.pcbi.0020036"},{"key":"42_CR2","doi-asserted-by":"publisher","first-page":"137","DOI":"10.1038\/nbt1053","volume":"23","author":"M. Tompa","year":"2005","unstructured":"Tompa, M., et al.: Assessing Computational Tools for the Discovery of Transcription Factor Binding Sites. Nature Biotechnology\u00a023, 137\u2013144 (2005)","journal-title":"Nature Biotechnology"},{"key":"42_CR3","doi-asserted-by":"publisher","first-page":"41","DOI":"10.1002\/prot.340070105","volume":"7","author":"C.E. Lawrence","year":"1990","unstructured":"Lawrence, C.E., Reilly, A.A.: An Expectation Maximization Algorithm for the Identification and Characterization of Common Sites in Unaligned Biopolymer Sequences. Proteins: Structure, Function and Genetics\u00a07, 41\u201351 (1990)","journal-title":"Proteins: Structure, Function and Genetics"},{"key":"42_CR4","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1111\/j.2517-6161.1977.tb01600.x","volume":"39","author":"A.P. Dempster","year":"1977","unstructured":"Dempster, A.P., et al.: Maximum Likelihood from Incomplete Data via the EM Algorithm (with Discussion). J. the Royal Statist. Soc. B\u00a039, 1\u201338 (1977)","journal-title":"J. the Royal Statist. Soc. B"},{"key":"42_CR5","first-page":"51","volume":"21","author":"T.L. Bailey","year":"1995","unstructured":"Bailey, T.L., Elkan, C.: Unsupervised Learning of Multiple Motifs in Biopolymers Using Expectation Maximization. Machine Learning\u00a021, 51\u201380 (1995)","journal-title":"Machine Learning"},{"key":"42_CR6","doi-asserted-by":"publisher","first-page":"287","DOI":"10.1080\/00949659608811772","volume":"55","author":"G. Celeux","year":"1996","unstructured":"Celeux, G., et al.: Stochastic Versions of the EM Algorithm: An Experimental Study in the Mixture Case. J. Statist. Comput. Simul.\u00a055, 287\u2013314 (1996)","journal-title":"J. Statist. Comput. Simul."},{"key":"42_CR7","doi-asserted-by":"publisher","first-page":"699","DOI":"10.2307\/2290005","volume":"85","author":"G.C.G. Wei","year":"1990","unstructured":"Wei, G.C.G., Tanner, M.A.: A Monte Carlo Implementation of the EM Algorithm and the Poor Man\u2019s Data Augmentation Algorithms. Journal of the American Statistical Association\u00a085, 699\u2013704 (1990)","journal-title":"Journal of the American Statistical Association"},{"key":"42_CR8","doi-asserted-by":"publisher","first-page":"94","DOI":"10.1214\/aos\/1018031103","volume":"27","author":"B. Delyon","year":"1999","unstructured":"Delyon, B., et al.: Convergence of a Stochastic Approximation Version of the EM Algorithm. Ann. Statist.\u00a027, 94\u2013128 (1999)","journal-title":"Ann. Statist."},{"key":"42_CR9","doi-asserted-by":"publisher","first-page":"723","DOI":"10.1016\/0022-2836(87)90354-8","volume":"193","author":"O.G. Berg","year":"1987","unstructured":"Berg, O.G., von Hippel, P.H.: Selection of DNA Binding Sites by Regulatory Proteins: Statistical-mechanical Theory and Application to Operators and Promoters. Journal of Molecular Biology\u00a0193, 723\u2013750 (1987)","journal-title":"Journal of Molecular Biology"},{"key":"42_CR10","doi-asserted-by":"publisher","first-page":"63","DOI":"10.1016\/S0304-3975(99)00324-2","volume":"259","author":"P. Bonizzoni","year":"2001","unstructured":"Bonizzoni, P., Vedova, G.D.: The Complexity of Multiple Sequence Alignment with SP-score That Is a Metric. Theoretical Computer Science\u00a0259, 63\u201379 (2001)","journal-title":"Theoretical Computer Science"},{"key":"42_CR11","doi-asserted-by":"crossref","unstructured":"Bi, C.-P.: SEAM: A Stochastic EM-type Algorithm for Motif-Finding in Biopolymer Sequences. J. Bioinformatics and Comput. Biol., in press (2007)","DOI":"10.1142\/S0219720007002527"},{"key":"42_CR12","doi-asserted-by":"publisher","first-page":"95","DOI":"10.1214\/aos\/1176346060","volume":"11","author":"C.F.J. Wu","year":"1983","unstructured":"Wu, C.F.J.: On the Convergence Properties of the EM Algorithm. The Annals of Statistics\u00a011, 95\u2013103 (1983)","journal-title":"The Annals of Statistics"},{"key":"42_CR13","doi-asserted-by":"publisher","first-page":"208","DOI":"10.1126\/science.8211139","volume":"262","author":"C.E. Lawrence","year":"1993","unstructured":"Lawrence, C.E., et al.: Detecting Subtle Sequence Signals: A Gibbs Sampling Strategy for Multiple Alignment. Science\u00a0262, 208\u2013214 (1993)","journal-title":"Science"},{"key":"42_CR14","doi-asserted-by":"crossref","unstructured":"Liu, X., et al.: BioProspector: Discovering Conserved DNA Motifs in Upstream Regulatory Regions of Co-expressed Genes. In: Pacific Symposium on Biocomputing, vol.\u00a06, pp. 127\u2013138 (2001)","DOI":"10.1142\/9789814447362_0014"},{"key":"42_CR15","doi-asserted-by":"publisher","first-page":"6097","DOI":"10.1093\/nar\/18.20.6097","volume":"18","author":"T.D. Schneider","year":"1990","unstructured":"Schneider, T.D., Stephens, R.M.: Sequence Logos: A New Way to Display Consensus Sequences. Nucleic Acids Research\u00a018, 6097\u20136100 (1990)","journal-title":"Nucleic Acids Research"},{"key":"42_CR16","doi-asserted-by":"publisher","first-page":"1188","DOI":"10.1101\/gr.849004","volume":"14","author":"G.E. Crooks","year":"2004","unstructured":"Crooks, G.E., et al.: WebLogo: A Sequence Logo Generator. Genome Research\u00a014, 1188\u20131190 (2004)","journal-title":"Genome Research"},{"key":"42_CR17","doi-asserted-by":"crossref","first-page":"D394","DOI":"10.1093\/nar\/gkj156","volume":"34","author":"H. Salgado","year":"2006","unstructured":"Salgado, H., et al.: RegulonDB (version 5.0): Escherichia coli K-12 Transcriptional Regulatory Network, Operon Organization, and Growth Conditions. Nucleic Acids Res. 34, D394\u2013397 (2006)","journal-title":"Nucleic Acids Res"},{"key":"42_CR18","doi-asserted-by":"publisher","first-page":"99","DOI":"10.1006\/jmbi.2001.4650","volume":"309","author":"A.E. Kel","year":"2001","unstructured":"Kel, A.E., et al.: Computer-assisted Identification of Cell Cycle-related Genes: New Targets for E2F Transcription Factors. J. Mol. Biol.\u00a0309, 99\u2013120 (2001)","journal-title":"J. Mol. Biol."},{"key":"42_CR19","doi-asserted-by":"publisher","first-page":"2905","DOI":"10.1093\/nar\/29.14.2905","volume":"29","author":"C.M. Klinge","year":"2001","unstructured":"Klinge, C.M.: Estrogen Receptor Interaction with Estrogen Response Elements. Nucleic Acids Res.\u00a029, 2905\u20132919 (2001)","journal-title":"Nucleic Acids Res."},{"key":"42_CR20","doi-asserted-by":"publisher","first-page":"1577","DOI":"10.1093\/bioinformatics\/btl147","volume":"22","author":"Z. Wei","year":"2006","unstructured":"Wei, Z., Jensen, S.T.: GAME: Detecting cis-Regulatory Elements Using a Genetic Algorithm. Bioinformatics\u00a022, 1577\u20131584 (2006)","journal-title":"Bioinformatics"},{"key":"42_CR21","doi-asserted-by":"publisher","first-page":"2787","DOI":"10.1093\/bioinformatics\/bth330","volume":"20","author":"M. Martinez-Bueno","year":"2004","unstructured":"Martinez-Bueno, M., et al.: BacTregulators: A Database of Transcriptional Regulators in Bacteria and Archaea. Bioinformatics\u00a020, 2787\u20132791 (2004)","journal-title":"Bioinformatics"},{"key":"42_CR22","doi-asserted-by":"publisher","first-page":"1207","DOI":"10.1110\/ps.051857206","volume":"15","author":"T. Krell","year":"2006","unstructured":"Krell, T., et al.: The IclR Family of Transcriptional Activators and Repressors Can Be Defined by a Single Profile. Protein Science\u00a015, 1207\u20131213 (2006)","journal-title":"Protein Science"},{"key":"42_CR23","unstructured":"Bi, C.-P.: A Genetic-Based EM Motif-Finding Algorithm for Biological Sequence Analysis. In: Proceeding of IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, in press (2007)"}],"container-title":["Lecture Notes in Computer Science","Bioinformatics Research and Applications"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-540-72031-7_42.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,1,20]],"date-time":"2025-01-20T04:17:23Z","timestamp":1737346643000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-540-72031-7_42"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[null]]},"ISBN":["9783540720300","9783540720317"],"references-count":23,"URL":"https:\/\/doi.org\/10.1007\/978-3-540-72031-7_42","relation":{},"subject":[]}}