{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,4]],"date-time":"2024-09-04T23:21:07Z","timestamp":1725492067158},"publisher-location":"Berlin, Heidelberg","reference-count":28,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540730590"},{"type":"electronic","value":"9783540730606"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"DOI":"10.1007\/978-3-540-73060-6_1","type":"book-chapter","created":{"date-parts":[[2007,9,18]],"date-time":"2007-09-18T15:35:17Z","timestamp":1190129717000},"page":"1-13","source":"Crossref","is-referenced-by-count":0,"title":["Not All Scale Free Networks Are Born Equal: The Role of the Seed Graph in PPI Network Emulation"],"prefix":"10.1007","author":[{"given":"Fereydoun","family":"Hormozdiari","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Petra","family":"Berenbrink","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Nata\u0161a","family":"Pr\u017eulj","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Cenk","family":"Sahinalp","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"issue":"Database Issue","key":"1_CR1","doi-asserted-by":"publisher","first-page":"418","DOI":"10.1093\/nar\/gki051","volume":"33","author":"C. Alfarano","year":"2005","unstructured":"Alfarano, C., et al.: The biomolecular interaction network database and related tools. Nucl Acids Res.\u00a033(Database Issue), 418\u2013424 (2005)","journal-title":"Nucl Acids Res."},{"key":"1_CR2","doi-asserted-by":"crossref","unstructured":"Aiello, W., Chung, F., Lu, L.: Random graph model for power law graphs. In: Proc ACM STOC, pp. 171\u2013180 (2000)","DOI":"10.1145\/335305.335326"},{"key":"1_CR3","doi-asserted-by":"publisher","first-page":"509","DOI":"10.1126\/science.286.5439.509","volume":"286","author":"A.-L. Barab\u00e1si","year":"1999","unstructured":"Barab\u00e1si, A.-L., Albert, R.A.: Emergence of scaling in random networks. Science\u00a0286, 509\u2013512 (1999)","journal-title":"Science"},{"key":"1_CR4","unstructured":"Bebek, G., Berenbrink, P., Cooper, C., Friedetzky, T., Nadeau, J., Sahinalp, S.C.: The degree distribution of the general duplication models, Theor Comp Sci. (to appear)"},{"key":"1_CR5","unstructured":"Bebek, G., Berenbrink, P., Cooper, C., Friedetzky, T., Nadeau, J., Sahinalp, S.C.: Topological Properties of proteome networks. In: Proc RECOMB Sat. Mtg. on Sys. Bio. (LNBI) (2005)"},{"key":"1_CR6","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"725","DOI":"10.1007\/3-540-45061-0_57","volume-title":"Automata, Languages and Programming","author":"N. Berger","year":"2003","unstructured":"Berger, N., Bollob\u00e1s, B., Borgs, C., Chayes, J., Riordan, O.: Degree distribution of the FKP network model. In: Baeten, J.C.M., Lenstra, J.K., Parrow, J., Woeginger, G.J. (eds.) ICALP 2003. LNCS, vol.\u00a02719, pp. 725\u2013738. Springer, Heidelberg (2003)"},{"key":"1_CR7","doi-asserted-by":"publisher","first-page":"1486","DOI":"10.1093\/bioinformatics\/18.11.1486","volume":"18","author":"A. Bhan","year":"2002","unstructured":"Bhan, A., Galas, D.J., Dewey, T.G.: A duplication growth model of gene expression networks. Bioinformatics\u00a018, 1486\u20131493 (2002)","journal-title":"Bioinformatics"},{"key":"1_CR8","doi-asserted-by":"publisher","first-page":"279","DOI":"10.1002\/rsa.1009","volume":"18","author":"B. Bollob\u00e1s","year":"2001","unstructured":"Bollob\u00e1s, B., Riordan, O., Spencer, J., Tusan\u00e1dy, G.: The degree sequence of a scale-free random graph process. Random Str. & Alg.\u00a018, 279\u2013290 (2001)","journal-title":"Random Str & Alg"},{"key":"1_CR9","doi-asserted-by":"publisher","first-page":"677","DOI":"10.1089\/106652703322539024","volume":"10","author":"F. Chung","year":"2003","unstructured":"Chung, F., Lu, L., Dewey, G.T., Galas, J.D.: Duplication models for biological networks. J. Comp Bio.\u00a010, 677\u2013687 (2003)","journal-title":"J Comp Bio"},{"issue":"3","key":"1_CR10","doi-asserted-by":"publisher","first-page":"311","DOI":"10.1002\/rsa.10084","volume":"22","author":"C. Cooper","year":"2003","unstructured":"Cooper, C., Frieze, A.: A general model of webgraphs. Random Str. & Alg.\u00a022(3), 311\u2013335 (2003)","journal-title":"Random Str & Alg"},{"key":"1_CR11","doi-asserted-by":"publisher","first-page":"349","DOI":"10.1074\/mcp.M100037-MCP200","volume":"1","author":"C.M. Deane","year":"2002","unstructured":"Deane, C.M., Salwinski, L., Xenarios, I., Eisenberg, D.: Protein interactions: Two methods for assessment of the reliability of high-troughput observations. Mol. Cell Port\u00a01, 349\u2013356 (2002)","journal-title":"Mol Cell Port"},{"key":"1_CR12","doi-asserted-by":"publisher","first-page":"419","DOI":"10.1098\/rsif.2005.0067","volume":"2","author":"E. Silva De","year":"2005","unstructured":"De Silva, E., Stumpf, M.P.H.: Complex networks and simple models in biology. J. of the Royal Society Interface\u00a02, 419\u2013430 (2005)","journal-title":"J of the Royal Society Interface"},{"key":"1_CR13","doi-asserted-by":"crossref","first-page":"290","DOI":"10.5486\/PMD.1959.6.3-4.12","volume":"6","author":"P. Erd\u00f6s","year":"1959","unstructured":"Erd\u00f6s, P., R\u00e9nyi, A.: On random graphs I. Publicationes Mathematicae Debrecen\u00a06, 290\u2013297 (1959)","journal-title":"Publicationes Mathematicae Debrecen"},{"key":"1_CR14","doi-asserted-by":"publisher","first-page":"41","DOI":"10.1038\/35075138","volume":"411","author":"H. Jeong","year":"2001","unstructured":"Jeong, H., Mason, S., Barabasi, A.-L., Oltvai, Z.N.: Lethality and centrality in protein networks. Nature\u00a0411, 41 (2001)","journal-title":"Nature"},{"key":"1_CR15","doi-asserted-by":"publisher","first-page":"452","DOI":"10.1093\/nar\/gkh052","volume":"32","author":"H. Hermjakob","year":"2004","unstructured":"Hermjakob, H., et al.: IntAct - an open source molecular interaction database. Nucl Acids Res.\u00a032, 452\u2013455 (2004)","journal-title":"Nucl Acids Res"},{"issue":"1-3","key":"1_CR16","first-page":"216","volume":"150","author":"N. Przulj","year":"2005","unstructured":"Przulj, N., Corneil, D.G., Jurisica, I.: Modeling Interactome: Scale-Free or Geometric? Bioinformatics\u00a0150(1-3), 216\u2013231 (2005)","journal-title":"Bioinformatics"},{"key":"1_CR17","doi-asserted-by":"crossref","DOI":"10.1007\/978-3-642-86659-3","volume-title":"Evolution by gene duplication","author":"S. Ohno","year":"1970","unstructured":"Ohno, S.: Evolution by gene duplication. Springer, Heidelberg (1970)"},{"key":"1_CR18","doi-asserted-by":"publisher","first-page":"199","DOI":"10.1016\/S0022-5193(03)00028-6","volume":"222","author":"R. Pastor-Satorras","year":"2003","unstructured":"Pastor-Satorras, R., Smith, E., Sole, R.V.: Evolving protein interaction networks through gene duplication. J. Theor Biol.\u00a0222, 199\u2013210 (2003)","journal-title":"J Theor Biol."},{"key":"1_CR19","doi-asserted-by":"publisher","first-page":"257","DOI":"10.1016\/j.compbiolchem.2004.07.001","volume":"28","author":"T. Przytycka","year":"2004","unstructured":"Przytycka, T., Yu, Y.K.: Scale-free networks versus evolutionary drift. Comp Bio. & Chem.\u00a028, 257\u2013264 (2004)","journal-title":"Comp Bio & Chem."},{"issue":"Database issue:","key":"1_CR20","doi-asserted-by":"publisher","first-page":"449","DOI":"10.1093\/nar\/gkh086","volume":"32","author":"L. Salwinski","year":"2004","unstructured":"Salwinski, L., et al.: The Database of interacting Proteins:2004 update. Nucl Acids Res.\u00a032(Database issue:D), 449\u2013451 (2004)","journal-title":"Nucl Acids Res"},{"key":"1_CR21","doi-asserted-by":"publisher","first-page":"5140","DOI":"10.1016\/j.febslet.2005.08.024","volume":"579","author":"R. Tanaka","year":"2005","unstructured":"Tanaka, R., et al.: Some protein interaction data do not exhibit power law statistics. FEBS Letters\u00a0579, 5140\u20135144 (2005)","journal-title":"FEBS Letters"},{"key":"1_CR22","doi-asserted-by":"publisher","first-page":"38","DOI":"10.1159\/000067642","volume":"1","author":"A. V\u00e1zquez","year":"2003","unstructured":"V\u00e1zquez, A., Flammini, A., Maritan, A., Vespignani, A.: Modelling of protein interaction networks. Complexus\u00a01, 38\u201344 (2003)","journal-title":"Complexus"},{"key":"1_CR23","doi-asserted-by":"publisher","first-page":"839","DOI":"10.1038\/nbt1116","volume":"23","author":"J. Han","year":"2005","unstructured":"Han, J., Dupuy, D., Bertin, N., Cusick, M., Vidal, M.: Effect of sampling on topology predictions of protein-protein interaction networks. Nature Biotech.\u00a023, 839\u2013844 (2005)","journal-title":"Nature Biotech."},{"key":"1_CR24","doi-asserted-by":"crossref","first-page":"1283","DOI":"10.1093\/oxfordjournals.molbev.a003913","volume":"18","author":"A. Wagner","year":"2001","unstructured":"Wagner, A.: The Yeast protein interaction network evolves rapidly and contains few redundant duplicate genes. Mol. Biol. Evol.\u00a018, 1283\u20131292 (2001)","journal-title":"Mol. Biol. Evol."},{"key":"1_CR25","doi-asserted-by":"crossref","DOI":"10.1515\/9780691188331","volume-title":"Small Worlds: The Dynamics of Networks between Order and Randomness","author":"D.J. Watts","year":"1999","unstructured":"Watts, D.J.: Small Worlds: The Dynamics of Networks between Order and Randomness. Princeton Univ Press, Princeton (1999)"},{"key":"1_CR26","doi-asserted-by":"crossref","DOI":"10.1017\/CBO9780511815478","volume-title":"Social network analysis: methods and applications","author":"S. Wasserman","year":"1994","unstructured":"Wasserman, S., Faust, K.: Social network analysis: methods and applications. Cambridge Univ. Press, New York (1994)"},{"key":"1_CR27","doi-asserted-by":"publisher","first-page":"303","DOI":"10.1093\/nar\/30.1.303","volume":"30","author":"I. Xenarios","year":"2002","unstructured":"Xenarios, I., et al.: DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions. Nucl. Acids Res.\u00a030, 303\u2013305 (2002)","journal-title":"Nucl. Acids Res."},{"issue":"1","key":"1_CR28","doi-asserted-by":"publisher","first-page":"135","DOI":"10.1016\/S0014-5793(01)03293-8","volume":"513","author":"A. Zanzoni","year":"2002","unstructured":"Zanzoni, A. et al.: MINT: a Molecular INteraction database. FEBS Letters\u00a0513(1), 135\u2013140 (2002)","journal-title":"FEBS Letters"}],"container-title":["Lecture Notes in Computer Science","Systems Biology and Computational Proteomics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-540-73060-6_1.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,5,14]],"date-time":"2023-05-14T05:21:11Z","timestamp":1684041671000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-540-73060-6_1"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[null]]},"ISBN":["9783540730590","9783540730606"],"references-count":28,"URL":"https:\/\/doi.org\/10.1007\/978-3-540-73060-6_1","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[]}}