{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,27]],"date-time":"2025-10-27T04:53:22Z","timestamp":1761540802985},"publisher-location":"Berlin, Heidelberg","reference-count":27,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540730590"},{"type":"electronic","value":"9783540730606"}],"license":[{"start":{"date-parts":[[2007,1,1]],"date-time":"2007-01-01T00:00:00Z","timestamp":1167609600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2007]]},"DOI":"10.1007\/978-3-540-73060-6_7","type":"book-chapter","created":{"date-parts":[[2007,9,18]],"date-time":"2007-09-18T11:35:17Z","timestamp":1190115317000},"page":"96-107","source":"Crossref","is-referenced-by-count":2,"title":["A Computational Approach for the Identification of Site-Specific Protein Glycosylations Through Ion-Trap Mass Spectrometry"],"prefix":"10.1007","author":[{"given":"Yin","family":"Wu","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yehia","family":"Mechref","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Iveta","family":"Klouckova","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Milos V.","family":"Novotny","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Haixu","family":"Tang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"7_CR1","first-page":"151","volume":"33","author":"P. Steen van den","year":"1998","unstructured":"van den Steen, P., et al.: Crit. Rev. Biochem. Mol. Biol.\u00a033, 151\u2013208 (1998)","journal-title":"Mol. Biol."},{"key":"7_CR2","doi-asserted-by":"publisher","first-page":"412","DOI":"10.1002\/(SICI)1521-1878(199905)21:5<412::AID-BIES8>3.0.CO;2-5","volume":"21","author":"J.W. Dennis","year":"1999","unstructured":"Dennis, J.W., Granovsky, M., Warren, C.E.: Protein glycosylation in development and disease. Bioassays\u00a021, 412\u2013421 (1999)","journal-title":"Bioassays"},{"key":"7_CR3","doi-asserted-by":"publisher","first-page":"643","DOI":"10.1146\/annurev.biochem.72.121801.161809","volume":"72","author":"J.B. Lowe","year":"2003","unstructured":"Lowe, J.B., Marth, J.D.: A genetic approach to mammalian glycan function. Ann. Rev. Biochem.\u00a072, 643\u2013691 (2003)","journal-title":"Ann. Rev. Biochem."},{"issue":"18","key":"7_CR4","doi-asserted-by":"publisher","first-page":"4895","DOI":"10.1021\/ac0341968","volume":"75","author":"Y. Mechref","year":"2003","unstructured":"Mechref, Y., Novotny, N.V., Krishnan, C.: Structural characterization of oligosaccharides using MALDI-TOF\/TOF tandem mass spectrometry. Anal Chem.\u00a075(18), 4895\u20134903 (2003)","journal-title":"Anal Chem."},{"issue":"3","key":"7_CR5","doi-asserted-by":"publisher","first-page":"161","DOI":"10.1002\/mas.10073","volume":"23","author":"J. Zaia","year":"2004","unstructured":"Zaia, J.: Mass spectrometry of oligosaccharides. Mass Spectrom Rev.\u00a023(3), 161\u2013227 (2004)","journal-title":"Mass Spectrom Rev."},{"issue":"15","key":"7_CR6","doi-asserted-by":"publisher","first-page":"1956","DOI":"10.1002\/jssc.200500258","volume":"28","author":"M.V. Novotny","year":"2005","unstructured":"Novotny, M.V., Mechref, Y.: New hyphenated methodologies in high-sensitivity glycoprotein analysis. J. Sep. Sci.\u00a028(15), 1956\u20131968 (2005)","journal-title":"J Sep Sci."},{"issue":"2","key":"7_CR7","doi-asserted-by":"publisher","first-page":"124","DOI":"10.1016\/j.jchromb.2005.01.030","volume":"825","author":"W. Wuhrer","year":"2005","unstructured":"Wuhrer, W., Deelder, A.M., Hokke, C.H.: Protein glycosylation analysis by liquid chromatography-mass spectrometry. J. Chromatogr. B Analyt. Technol. Biomed. Life Sci.\u00a0825(2), 124\u2013133 (2005)","journal-title":"J. Chromatogr. B Analyt. Technol. Biomed. Life Sci."},{"key":"7_CR8","unstructured":"Mechref, Y., Klouckova, I., Novotny, M.V.: Ion-trap-based strategy for the mass-spectrometric assignment of glycosylation sites in proteins. Rapid Commun. Mass Spectrom (submitted) (2006)"},{"key":"7_CR9","unstructured":"Hjorth, R., Vretblad.: Group fractionation of human serum glycoproteins using Sepharose bound lectins. In: Lect. Chem. Soc. Int. Symp. Uppsala, Sweden, Ellis Horwood Ltd (1976)"},{"issue":"5","key":"7_CR10","doi-asserted-by":"crossref","first-page":"593","DOI":"10.1093\/clinchem\/45.5.593","volume":"45","author":"D.S. Hage","year":"1999","unstructured":"Hage, D.S.: Affinity Chromatography: A Review of Clinical Applications. Clin. Chem.\u00a045(5), 593\u2013615 (1999)","journal-title":"Clin. Chem."},{"issue":"3","key":"7_CR11","doi-asserted-by":"publisher","first-page":"383","DOI":"10.1021\/pr034052+","volume":"3","author":"J. Nawarak","year":"2004","unstructured":"Nawarak, J., Phutrakul, S., Chen, S.-T.: Analysis of Lectin-Bound Glycoproteins in Snake Venom from the Elapidae and Viperidae Families. J. Proteome Res.\u00a03(3), 383\u2013392 (2004)","journal-title":"J. Proteome Res."},{"issue":"6","key":"7_CR12","doi-asserted-by":"publisher","first-page":"618","DOI":"10.1021\/pr0340274","volume":"2","author":"L. Xiong","year":"2003","unstructured":"Xiong, L., Andrews, D., Regnier, F.: Comparative Proteomics of Glycoproteins Based on Lectin Selection and Isotope Coding. J. Proteome Res.\u00a02(6), 618\u2013625 (2003)","journal-title":"J. Proteome Res."},{"key":"7_CR13","doi-asserted-by":"publisher","first-page":"3353","DOI":"10.1002\/pmic.200401190","volume":"5","author":"Z. Yang","year":"2005","unstructured":"Yang, Z., et al.: A study of glycoproteins in human serum and plasma reference standards (HUPO) using multilectin affinity chromatography coupled with RPLC-MS\/MS. Proteomics\u00a05, 3353\u20133366 (2005)","journal-title":"Proteomics"},{"issue":"13","key":"7_CR14","doi-asserted-by":"publisher","first-page":"4081","DOI":"10.1021\/ac050222l","volume":"77","author":"M. Madera","year":"2005","unstructured":"Madera, M., Mechref, Y., Novotny, M.V.: Combining Lectin Microcolumns with High-Resolution Separation Techniques for Enrichment of Glycoproteins and Glycopeptides. Anal. Chem.\u00a077(13), 4081\u20134090 (2005)","journal-title":"Anal. Chem."},{"issue":"12","key":"7_CR15","doi-asserted-by":"publisher","first-page":"3686","DOI":"10.1002\/pmic.200400869","volume":"4","author":"J. Reinders","year":"2004","unstructured":"Reinders, J., et al.: Challenges in mass spectrometry-based proteomics. Proteomics\u00a04(12), 3686\u20133703 (2004)","journal-title":"Proteomics"},{"key":"7_CR16","unstructured":"Lieth, C.W.v.d., Lutteke, T., Frank, M.: The role of informatics in glycobiology research with special emphasis on automatic interpretation of MS spectra. Biochim. Biophys. Acta. Epub in advance (2005)"},{"issue":"Suppl 1","key":"7_CR17","doi-asserted-by":"publisher","first-page":"431","DOI":"10.1093\/bioinformatics\/bti1038","volume":"21","author":"H. Tang","year":"2005","unstructured":"Tang, H., Mechref, Y., Novotny, M.V.: Automated interpretation of MS\/MS spectra of oligosaccharides. Bioinformatics\u00a021(Suppl 1), i431\u2013i439 (2005)","journal-title":"Bioinformatics"},{"issue":"2","key":"7_CR18","doi-asserted-by":"publisher","first-page":"321","DOI":"10.1021\/cr0103017","volume":"102","author":"Y. Mechref","year":"2002","unstructured":"Mechref, Y., Novotny, M.V.: Structural investigations of glycoconjugates at high sensitivity. Chem. Rev.\u00a0102(2), 321\u2013369 (2002)","journal-title":"Chem. Rev."},{"issue":"24","key":"7_CR19","doi-asserted-by":"publisher","first-page":"4390","DOI":"10.1021\/ac00096a002","volume":"66","author":"M. Mann","year":"1994","unstructured":"Mann, M., Wilm, M.: Error-tolerant identification of peptides in sequence databases by peptide sequence tags. Anal. Chem.\u00a066(24), 4390\u20134399 (1994)","journal-title":"Anal. Chem."},{"issue":"6","key":"7_CR20","doi-asserted-by":"publisher","first-page":"1307","DOI":"10.1021\/ac026199a","volume":"75","author":"S. Sunyaev","year":"2003","unstructured":"Sunyaev, S., et al.: MultiTag: multiple error-tolerant sequence tag search for the sequence-similarity identification of proteins by mass spectrometry. Anal. Chem.\u00a075(6), 1307\u20131315 (2003)","journal-title":"Anal. Chem."},{"issue":"4","key":"7_CR21","doi-asserted-by":"publisher","first-page":"1287","DOI":"10.1021\/pr050011x","volume":"4","author":"A. Frank","year":"2005","unstructured":"Frank, A., et al.: Peptide sequence tags for fast database search in mass-spectrometry. J. Proteome Res.\u00a04(4), 1287\u20131295 (2005)","journal-title":"J Proteome Res."},{"key":"7_CR22","doi-asserted-by":"crossref","unstructured":"Dancik, V., et al.: De novo peptide sequencing via tandem mass spectrometry. J. Comput. Biol. (1999)","DOI":"10.1145\/299432.299471"},{"key":"7_CR23","unstructured":"Skiena, S.: The Algorithm Design Manual (1998)"},{"key":"7_CR24","doi-asserted-by":"publisher","first-page":"6063","DOI":"10.1021\/ac015534c","volume":"73","author":"Y. Huang","year":"2001","unstructured":"Huang, Y., Mechref, Y., Novotny, M.V.: Microscale Nonreductive Release of O-linked Glycans for Subsequent Analysis Through MALDI Mass Spectrometry and Capillary Electrophoresis. Anal. Chem.\u00a073, 6063\u20136069 (2001)","journal-title":"Anal. Chem."},{"key":"7_CR25","doi-asserted-by":"publisher","first-page":"139","DOI":"10.1016\/S0076-6879(05)05007-X","volume":"405","author":"J. Peter-Katalinic","year":"2005","unstructured":"Peter-Katalinic, J.: O-glycosylation of proteins. Methods Enzymol.\u00a0405, 139\u2013171 (2005)","journal-title":"Methods Enzymol."},{"key":"7_CR26","doi-asserted-by":"crossref","unstructured":"Pevzner, P., et al.: Efficiency of database search for identification of mutated and modified proteins via mass spectrometry. Genome Res. (February 2001)","DOI":"10.1101\/gr.154101"},{"key":"7_CR27","doi-asserted-by":"crossref","unstructured":"Leptos, K.C., et al.: MapQuant: Open-source software for large-scale protein quantification. Proteomics, Epub in advance (2006)","DOI":"10.1002\/pmic.200500201"}],"container-title":["Lecture Notes in Computer Science","Systems Biology and Computational Proteomics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-540-73060-6_7","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,4,26]],"date-time":"2020-04-26T11:19:26Z","timestamp":1587899966000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-540-73060-6_7"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2007]]},"ISBN":["9783540730590","9783540730606"],"references-count":27,"URL":"https:\/\/doi.org\/10.1007\/978-3-540-73060-6_7","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2007]]}}}